Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007758

Physical Location & Seq

Genomic Coordinates Reverse (-)

30321892 .. 30322665

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGGCTGCTCGGAAGCTGGTGTTGGTCGTGGCAGCGGTGCTGGTGGTGGTTGCTTGCATTAATGTAGAGGTCTCCGATGCGCAGACCATTTGCAATGTGTCTGTGAATAACTTGATGTCCTGCAAGCCGGCCGTAACAAAACCTAACCCTTCCAGGCCGACCAAGACCTGCTGCTCGGTGCTGTCGCACGCCGACTTGAAGTGCCTCTGCTCCTACAGGAACTCGAACCTGTTGCCTTCTCTGGGGATTGACCCTAACCTTGCCATGCAGCTCCCTGCCAAGTGCAAGCTTCCTCACCCTGCCAATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

104

Amino Acids

11.03

Weight (kDa)

8.81

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	15 - 102	5.8e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	32 - 104	1.3e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18570
fragaria_vesca	FvH4_4g17620 FvH4_4g17620 FvH4_4g17620
malus_domestica	MD16G1172900.v1.1
prunus_persica	Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1
pyrus_communis	pycom16g14500
rosa_chinensis	RchiOBHm_Chr4g0421541
rosa_laevigata	RLG00000007669
rosa_multiflora	Rmu_sc0022469.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363790
rosa_rugosa	Rorug04G0172500 Rorug04G0172600
rosa_samantha	Rh4AG232900 Rh4BG235600 Rh4CG247300
rosa_wichuraiana	Rw4G020110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	179
AciI	CCGC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	19, 274, 292
AluI	AGCT	3 cut(s)	19, 274, 292
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	2 cut(s)	132, 158
ApeKI	GCWGC	4 cut(s)	8, 35, 174, 271
AseI	ATTAAT	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	47, 161, 283
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	9, 36, 175, 272
BlsI	GCNGC	4 cut(s)	10, 37, 176, 273
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	103
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	47, 161, 283
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	134, 160
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	134, 160
Bso31I	GGTCTC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	134, 160
BspMI	ACCTGC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	157
BstC8I	GCNNGC	5 cut(s)	58, 128, 132, 192, 290
BstHHI	GCGC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	79
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	47, 161, 283
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	134, 160
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	5 cut(s)	58, 128, 132, 192, 290
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	130
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	7 cut(s)	8, 19, 130, 134, 160, 274, 292
CviKI_1	RGCY	7 cut(s)	8, 19, 130, 134, 160, 274, 292
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	271
FaiI	YATR	1 cut(s)	269
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	9, 36, 175, 272
Fsp4HI	GCNGC	4 cut(s)	9, 36, 175, 272
FspBI	CTAG	1 cut(s)	313
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	4 cut(s)	9, 36, 175, 272
HaeIII	GGCC	2 cut(s)	134, 160
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	290
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	15, 79
HpyAV	CCTTC	2 cut(s)	162, 249
HpyCH4V	TGCA	5 cut(s)	60, 96, 126, 271, 288
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	218, 279
Lsp1109I	GCAGC	3 cut(s)	47, 161, 283
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	307
MluCI	AATT	1 cut(s)	307
MnlI	CCTC	3 cut(s)	64, 218, 306
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	157
NaeI	GCCGGC	1 cut(s)	132
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	10, 37, 176, 273
PshBI	ATTAAT	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	4 cut(s)	9, 36, 175, 272
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	8 cut(s)	21, 75, 148, 173, 234, 264, 276, 294
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	4 cut(s)	8, 35, 174, 271
VspI	ATTAAT	1 cut(s)	63
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.