Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007758

Physical Location & Seq

Genomic Coordinates Forward (+)

30331083 .. 30332990

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCTGAGTGGGGAACTGGAAAACTAATTCATATTGAGTTTGATGCTAACTGGATGCCTATTAGTGAAAATGGGAAGGGATTTAGTTCACAACTTGGAATTTTGGCGCGAGATGGAGAGAAGGTTCCTCTAACATATACTTCATGGAATGCCATGCCAGACGATATTTTGGATGTCATTTGGAAAGATGTCAAGGATAATACGGATGTTCCGGATGAGTATAAACAACATTGCTTAAAGGTTGTTGGTAGTAGATGGAGGGACTGGAAGTGCCGAGTCAAGACACAATGGTATGATAAATATGAAACGGATGAGCAGCGATTAACATTCATTCCTAGTCAGGAAATGTGTGAGACAAATAAATCTAGCCGTGCACAAGGAGGAGGCGTCCCTCATAGGACCGGTCGAAAATCTTTTGCTAGACTACGAAAAGAGATGATGGAGAATGGAGAGAAAACAGATCGTGTCAGCATGTTTGTCAAAACAAGAGCAATGAAAACAAAGGATGATGATGGTCAACCAATTGAAATTCATGATGAGGAGGCTACTGCTGTTATTAGTCAATTCAATGAATATTTGGAGGAGAGGCCAGAAGATGAACAAGATAATACTTTTCGTGAAGAGGTATTCACTAAAGTGATGGGAGAAGATGCACATGGACGTGTTCGCATGTATGGAACAGGTGTAACTCCATCTCAAGTGTTTGGTAATTCCAAAGCTTATGAGACTAATGAGAAAAGGACAATTGAGGAAATGGATAGAAAATACGAGGAAATGGAAAAGAACTATCAGACAAAGCTAGATGATCTTAAATTGAGCCATGAATCTCAATTGGGAGACATGAAATTAAAGTACGATGATGTATCGAATCGTCTCAATCTTTTGATGGCTCATGTTGGTATCCAAGTAAACCCAAGTGGAAGTACAAGTGAACAGGTTGGAGAAATATCTAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

319

Amino Acids

36.92

Weight (kDa)

5.18

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	113 - 231	2.1e-19	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18570
fragaria_vesca	FvH4_4g17620 FvH4_4g17620 FvH4_4g17620
malus_domestica	MD16G1172900.v1.1
prunus_persica	Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1 Prupe.1G139700_v2.0.a1
pyrus_communis	pycom16g14500
rosa_chinensis	RchiOBHm_Chr4g0421541
rosa_laevigata	RLG00000007669
rosa_multiflora	Rmu_sc0022469.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363790
rosa_rugosa	Rorug04G0172500 Rorug04G0172600
rosa_samantha	Rh4AG232900 Rh4BG235600 Rh4CG247300
rosa_wichuraiana	Rw4G020110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	99, 528
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	854, 925
AfiI	CCNNNNNNNGG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	661
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	527, 568
AjiI	CACGTC	1 cut(s)	662
AleI	CACNNNNGTG	1 cut(s)	635
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	2 cut(s)	719, 799
AluI	AGCT	2 cut(s)	719, 799
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	4 cut(s)	347, 719, 831, 878
Alw44I	GTGCAC	1 cut(s)	372
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	1 cut(s)	587
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	99, 528
AsiGI	ACCGGT	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	7 cut(s)	107, 249, 433, 506, 634, 700, 880
BceAI	ACGGC	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	911
BcoDI	GTCTC	4 cut(s)	347, 719, 831, 878
BfaI	CTAG	5 cut(s)	336, 366, 420, 800, 951
BfuI	GTATCC	1 cut(s)	911
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	3 cut(s)	34, 45, 640
BpuEI	CTTGAG	1 cut(s)	681
BsaHI	GRCGYC	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	211, 401
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	3 cut(s)	22, 56, 269
Bse3DI	GCAATG	2 cut(s)	229, 498
BseAI	TCCGGA	1 cut(s)	211
BseGI	GGATG	6 cut(s)	60, 178, 211, 220, 316, 511
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	2 cut(s)	229, 498
BseNI	ACTGG	3 cut(s)	22, 56, 269
BseRI	GAGGAG	3 cut(s)	396, 554, 596
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	109
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	589
BshTI	ACCGGT	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	212, 402
BslFI	GGGAC	2 cut(s)	275, 374
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	4 cut(s)	347, 719, 831, 878
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	2 cut(s)	275, 374
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	460, 805
BspANI	GGCC	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	126
BsrDI	GCAATG	2 cut(s)	229, 498
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	22, 56, 269
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	2 cut(s)	460, 805
BssNI	GRCGYC	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	615
BstACI	GRCGYC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	6 cut(s)	60, 178, 211, 220, 316, 511
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	463, 808
BstMAI	GTCTC	4 cut(s)	347, 719, 831, 878
BstMBI	GATC	2 cut(s)	460, 805
BstMCI	CGRYCG	1 cut(s)	406
BstNSI	RCATGY	2 cut(s)	475, 673
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	911
BsuRI	GGCC	1 cut(s)	589
BtrI	CACGTC	1 cut(s)	662
BtsCI	GGATG	6 cut(s)	60, 178, 211, 220, 316, 511
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	853, 924
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	9 cut(s)	144, 154, 472, 533, 656, 670, 821, 841, 893
CviJI	RGCY	7 cut(s)	369, 545, 589, 719, 799, 819, 890
CviKI_1	RGCY	7 cut(s)	369, 545, 589, 719, 799, 819, 890
CviQI	GTAC	2 cut(s)	853, 924
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	462, 807
DpnII	GATC	2 cut(s)	460, 805
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	9 cut(s)	147, 157, 475, 536, 659, 673, 824, 844, 896
FaqI	GGGAC	2 cut(s)	275, 374
FatI	CATG	9 cut(s)	143, 153, 471, 532, 655, 669, 820, 840, 892
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	6 cut(s)	67, 185, 218, 227, 323, 518
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	5 cut(s)	336, 366, 420, 800, 951
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	2 cut(s)	212, 402
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	9 cut(s)	147, 157, 475, 536, 659, 673, 824, 844, 896
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	518
HindII	GTYRAC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	3 cut(s)	276, 824, 868
HpaII	CCGG	2 cut(s)	212, 402
Hpy166II	GTNNAC	5 cut(s)	89, 374, 518, 910, 932
Hpy188I	TCNGA	1 cut(s)	792
Hpy188III	TCNNGA	5 cut(s)	212, 280, 341, 533, 617
Hpy8I	GTNNAC	5 cut(s)	89, 374, 518, 910, 932
HpyAV	CCTTC	2 cut(s)	70, 115
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	2 cut(s)	374, 653
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	661
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	9 cut(s)	147, 157, 475, 536, 659, 673, 824, 844, 896
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	460, 805
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	3 cut(s)	34, 45, 640
MaeI	CTAG	5 cut(s)	336, 366, 420, 800, 951
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	2 cut(s)	462, 807
MboI	GATC	2 cut(s)	460, 805
MboII	GAAGA	3 cut(s)	605, 632, 659
MfeI	CAATTG	3 cut(s)	522, 744, 830
MhlI	GDGCHC	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	919
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	4 cut(s)	236, 323, 810, 848
MslI	CAYNNNNRTG	2 cut(s)	635, 660
MspI	CCGG	2 cut(s)	212, 402
MunI	CAATTG	3 cut(s)	522, 744, 830
Mva1269I	GAATGC	1 cut(s)	154
MvnI	CGCG	1 cut(s)	109
NdeII	GATC	2 cut(s)	460, 805
NlaIII	CATG	9 cut(s)	147, 157, 475, 536, 659, 673, 824, 844, 896
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	299
NspI	RCATGY	2 cut(s)	475, 673
OliI	CACNNNNGTG	1 cut(s)	635
PagI	TCATGA	1 cut(s)	532
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	824, 868
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	399
RsaI	GTAC	2 cut(s)	854, 925
RsaNI	GTAC	2 cut(s)	853, 924
RseI	CAYNNNNRTG	2 cut(s)	635, 660
SaqAI	TTAA	4 cut(s)	236, 323, 810, 848
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	2 cut(s)	460, 805
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	8 cut(s)	126, 243, 627, 664, 685, 721, 801, 939
SfaNI	GCATC	3 cut(s)	34, 45, 640
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	635, 660
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	5 cut(s)	336, 366, 420, 800, 951
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	2 cut(s)	406, 866
TatI	WGTACW	1 cut(s)	923
TfiI	GAWTC	2 cut(s)	824, 868
Tru1I	TTAA	4 cut(s)	236, 323, 810, 848
Tru9I	TTAA	4 cut(s)	236, 323, 810, 848
TseI	GCWGC	1 cut(s)	316
TspGWI	ACGGA	2 cut(s)	218, 323
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	2 cut(s)	99, 528
XceI	RCATGY	2 cut(s)	475, 673
XspI	CTAG	5 cut(s)	336, 366, 420, 800, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.