Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016521

Physical Location & Seq

Genomic Coordinates Forward (+)

39746213 .. 39748677

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0232200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTCAGGTAGATGATTACCTTAGGAAACAAGCTGCTGAATTGTTGCAAGCTATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGTAGTTTCTGACGGACCAAGTACAAACACAAAACAGCACTTTGATGAGTGTTTCGATTACATTGAGGAAGCTAAAAGATCTGGTGGCAGTGTGCTGGTTCATTGCTTTGTGGGAAGATCCAGAAGTGTGGCTGTTGTTGTTCCTTATCTTCTGAAAAAGCACGGTATGACCCTCTTCGAAGCTCTTGATCATGTGAAGAGTGGACGAGCACGGGCAGCTCCTAATGCTGGTTTCAGTACACAGCTGTATGAATATGAAATGTTTCTTTCTGGGACTTCCATATACTTTACTATGAAGCCTGCAGAATTCTTGCAACTTCGCAAAGTGATGAGCTTAAACCAAGCCTGGAAGCAGCCAAATCAATCTGCAGGAGATTGTCCTCCAATTGGTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

167

Amino Acids

18.62

Weight (kDa)

6.08

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	37 - 121	7.6e-24	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13280
fragaria_vesca	FvH4_4g22800
malus_domestica	MD16G1129600.v1.1
prunus_persica	Prupe.1G216900_v2.0.a1
pyrus_communis	pycom16g10980
rosa_chinensis	RchiOBHm_Chr4g0429031
rosa_laevigata	RLG00000007102
rosa_multiflora	Rmu_sc0008629.1_g000018
rosa_roxburghii	Rroxscaffold_5G00370680
rosa_rugosa	Rorug04G0232200
rosa_samantha	Rh4AG288200 Rh4BG294400 Rh4DG291300
rosa_wichuraiana	Rw4G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	410
AfaI	GTAC	2 cut(s)	127, 343
AfiI	CCNNNNNNNGG	3 cut(s)	332, 491, 494
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	7 cut(s)	35, 53, 176, 287, 323, 349, 438
AluI	AGCT	7 cut(s)	35, 53, 176, 287, 323, 349, 438
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	3 cut(s)	35, 320, 457
ApoI	RAATTY	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	22, 332, 469
BciT130I	CCWGG	1 cut(s)	451
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	292
BfmI	CTRYAG	2 cut(s)	405, 471
BfuI	GTATCC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	3 cut(s)	36, 321, 458
BlsI	GCNGC	3 cut(s)	37, 322, 459
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	451
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 491, 494
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	332, 491, 494
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	22, 332, 469
BshFI	GGCC	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	332, 491, 494
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	182, 221, 292
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	1 cut(s)	19
BspMAI	CTGCAG	2 cut(s)	409, 475
BspPI	GGATC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	205
BssMI	GATC	3 cut(s)	182, 221, 292
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	3 cut(s)	96, 284, 296
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	51, 405
BstDEI	CTNAG	2 cut(s)	6, 23
BstKTI	GATC	3 cut(s)	185, 224, 295
BstMBI	GATC	3 cut(s)	182, 221, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 329
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	2 cut(s)	405, 471
BstV1I	GCAGC	3 cut(s)	22, 332, 469
BstX2I	RGATCY	2 cut(s)	182, 221
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	2 cut(s)	182, 221
Bsu36I	CCTNAGG	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	51, 405
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	126, 342
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	2 cut(s)	126, 342
DdeI	CTNAG	2 cut(s)	6, 23
DpnI	GATC	3 cut(s)	184, 223, 294
DpnII	GATC	3 cut(s)	182, 221, 292
Eam1104I	CTCTTC	3 cut(s)	96, 284, 296
EarI	CTCTTC	3 cut(s)	96, 284, 296
Eco47I	GGWCC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	449
FaeI	CATG	1 cut(s)	299
FaiI	YATR	9 cut(s)	56, 72, 272, 297, 354, 360, 386, 388, 398
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	36, 321, 458
Fsp4HI	GCNGC	3 cut(s)	36, 321, 458
GluI	GCNGC	3 cut(s)	36, 321, 458
HaeIII	GGCC	1 cut(s)	498
Hin1II	CATG	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	308, 344
Hpy188I	TCNGA	2 cut(s)	115, 258
Hpy188III	TCNNGA	2 cut(s)	225, 290
Hpy8I	GTNNAC	2 cut(s)	308, 344
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	4 cut(s)	49, 407, 418, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 329
HpyF3I	CTNAG	2 cut(s)	6, 23
Hsp92II	CATG	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	182, 221, 292
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	22, 332, 469
MalI	GATC	3 cut(s)	184, 223, 294
MboI	GATC	3 cut(s)	182, 221, 292
MboII	GAAGA	5 cut(s)	113, 231, 245, 271, 313
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	182, 221
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	41, 410, 489
MnlI	CCTC	5 cut(s)	70, 97, 163, 287, 495
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	320, 329
NdeII	GATC	3 cut(s)	182, 221, 292
NlaIII	CATG	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	37, 322, 459
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	2 cut(s)	409, 475
PsuI	RGATCY	2 cut(s)	182, 221
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	127, 343
RsaNI	GTAC	2 cut(s)	126, 342
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	3 cut(s)	36, 321, 458
Sau3AI	GATC	3 cut(s)	182, 221, 292
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	316
SfcI	CTRYAG	2 cut(s)	405, 471
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	41, 410, 489
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	159, 282
TasI	AATT	3 cut(s)	41, 410, 489
TatI	WGTACW	2 cut(s)	125, 341
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	3 cut(s)	35, 320, 457
TspDTI	ATGAA	5 cut(s)	71, 194, 369, 375, 413
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.