Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016521

Physical Location & Seq

Genomic Coordinates Reverse (-)

60223336 .. 60226902

Gene Structure 3567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGAGGCTTCACTGCATTTCCGCGGCGTTAGATTTCCAAGACTCGCCGCACACTCGCCGCGCGTGCGACGGCTGTCCTCCGCCGTGGCCTCGCCGTCGCGGTCGTTGTATGCGGCGGTGGAGAATGCATGTAAAGGCGGAGGCTTGAGAGCTGGGAGACGGGCCAAGAGAATCGAAGCTGTGGTTGTGGTTGGGGAAGAAGAGAAAGGCGATGAAACGGCGTCGTTTAGTTGCGTGATGAAATTCGGAGGGTCGTCGGTGGCGACGGCGGAGAGGATAAGAGAGATTGCTGAGCTGCTTGTGAGTTTTCCGGAGGAGAAGCCTGTGGTTGTGCTCTCTGCAATGGGGAAGACCACTAATAACCTCTTACTTGCTGGGGAGAAAGCTGTCAGTTGCGGGGTTTCGAATGCTTCTGAAATCGAAGAATTGAGCTATGTAAAACAACTGCATCTCAAGACTGTTGATGAACTTGGAGTTGATCCTTCTGTTGTTTTGGGACACTTGCAAGAATTGGAGCAACTTCTGAAGGGGATAGCAATGATGAAAGAGTTGACTCTGCGCACAAGAGACTATCTAGTTTCATTTGGAGAGTGCATGTCCACACGAATCGTTGCAGCTTATCTGAATAAGATTGGTGTTAAGGCGCGCCAGTATGATGCATTTGACATTGGTTTCATAACAACAGATGACTTCACCAATGCTGAAATTTTAGAGGGAACTTACCCATCTGTTGCTAAAAGATTAAATGATGATTGGATTAGTGATCCTGCGATTCCCATTGTTACTGGCTTTCTCGGAAAGGCCTCAAAATCTCGTGCAGTTACTACCCTAGGTAGGGGTGGTAGTGATTTGACAGCCACAACCATTGGTAAAGCCCTAGGCTTGCGAGAAGTCCAGGTGTGGAAGGATGTTGATGGTGTTTTGACCTGCGATCCTAGTATATGTTCTAATGCACAACCTGTTCCTTATTTGACTTTCGATGAGGCGGCTGAGCTTGCATATTTTGGTGCTCAGGTTCTACATCCGCAATCTATGAGACCAGCTAGAGATGGTGATATTCCTGTTAGGGTCAAGAACTCTTATAACCCTAAAGCTCCTGGTACAATCATCACTAAAACAAGAGATATGAGCAAGGCTGTTCTAACCAGCATAGTCCTGAAGCAAAATATCACTCTGTTGGATATTGTTAGCACACGCATGCTTGGTCAAGTTGGTTTTCTTGCAAAGGTGTTTTCAACCTTTGAAGATTTGGGCATATCTGTCGATGTTGTTGCAACAAGTGAAGTTAGTTTATCTTTGACGTTGGATCCATCAAAATTCTGGAGTAGAGAACTAATTCAGCAGGAACTTGACAAAATGGAGGAAGAACTTGAAAAAATTGCATACGTAAATCTTCTGCAGAAGAGATCAATCATCTCGCTCATAGGGAATGTTCAGTATTCTTCATTGATTCTAGAGAAGGCATTTCAAGTTCTTCGAACGAATCAAGTTAATGTGCAGATGATCTCACAAGGGGCATCTAAGGTAAACATCTCATTGATAGTAAATGACAGTGAAGCTGAAATCTGCGTGAATGCCCTTCACCATGCCTTCTTTGAAAGCGGTGACCTGTCTGAATTAGTACTAGAAGGCGGATTCGGGAATGGCGCAGCTTCACCATTGCCGGTGGAAACATCCATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

561

Amino Acids

60.88

Weight (kDa)

5.63

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	78 - 359	2.3e-48	Amino acid kinase family
ACT_9	PF22468	395 - 437	6e-06	ACT domain
ACT_9	PF22468	472 - 531	2.2e-14	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13280
fragaria_vesca	FvH4_4g22800
malus_domestica	MD16G1129600.v1.1
prunus_persica	Prupe.1G216900_v2.0.a1
pyrus_communis	pycom16g10980
rosa_chinensis	RchiOBHm_Chr4g0429031
rosa_laevigata	RLG00000007102
rosa_multiflora	Rmu_sc0008629.1_g000018
rosa_roxburghii	Rroxscaffold_5G00370680
rosa_rugosa	Rorug04G0232200
rosa_samantha	Rh4AG288200 Rh4BG294400 Rh4DG291300
rosa_wichuraiana	Rw4G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1083
Acc16I	TGCGCA	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	935
AccII	CGCG	5 cut(s)	24, 61, 63, 100, 646
AccIII	TCCGGA	1 cut(s)	310
AclWI	GGATC	5 cut(s)	473, 758, 926, 1301, 1314
AcsI	RAATTY	3 cut(s)	242, 705, 1316
AcuI	CTGAAG	2 cut(s)	545, 1178
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	1102, 1623
AfiI	CCNNNNNNNGG	2 cut(s)	834, 835
AgsI	TTSAA	5 cut(s)	1236, 1244, 1373, 1469, 1598
AjnI	CCWGG	2 cut(s)	894, 1096
Alw21I	GWGCWC	2 cut(s)	336, 1012
Alw26I	GTCTC	3 cut(s)	151, 561, 1030
AlwI	GGATC	5 cut(s)	473, 758, 926, 1301, 1314
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	87, 162, 801
ApeKI	GCWGC	3 cut(s)	295, 614, 1649
ApoI	RAATTY	3 cut(s)	242, 705, 1316
AscI	GGCGCGCC	1 cut(s)	644
Asp700I	GAANNNNTTC	1 cut(s)	1335
AspA2I	CCTAGG	2 cut(s)	829, 877
AspLEI	GCGC	5 cut(s)	63, 561, 646, 648, 1649
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	5 cut(s)	685, 1064, 1574, 1616, 1647
AsuII	TTCGAA	2 cut(s)	404, 1477
AvrII	CCTAGG	2 cut(s)	829, 877
BamHI	GGATCC	1 cut(s)	1306
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	336, 1012
BbvI	GCAGC	3 cut(s)	282, 626, 1661
BccI	CCATC	4 cut(s)	733, 908, 1043, 1318
BceAI	ACGGC	5 cut(s)	68, 79, 86, 234, 282
BcgI	CGANNNNNNTGC	4 cut(s)	1243, 1253, 1277, 1287
BciT130I	CCWGG	2 cut(s)	896, 1098
BcoDI	GTCTC	3 cut(s)	151, 561, 1030
BfaI	CTAG	7 cut(s)	575, 830, 878, 936, 1044, 1454, 1625
BfmI	CTRYAG	1 cut(s)	1397
BfuAI	ACCTGC	1 cut(s)	935
BisI	GCNGC	8 cut(s)	25, 48, 59, 114, 296, 615, 987, 1650
BlnI	CCTAGG	2 cut(s)	829, 877
BlpI	GCTNAGC	2 cut(s)	291, 990
BlsI	GCNGC	8 cut(s)	26, 49, 60, 115, 297, 616, 988, 1651
BmcAI	AGTACT	1 cut(s)	1623
Bme1390I	CCNGG	2 cut(s)	896, 1098
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	1308
BmrFI	CCNGG	2 cut(s)	896, 1098
BmsI	GCATC	3 cut(s)	457, 646, 1526
BoxI	GACNNNNGTC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	1342
Bpu10I	CCTNAGC	1 cut(s)	1011
Bpu1102I	GCTNAGC	2 cut(s)	291, 990
Bpu14I	TTCGAA	2 cut(s)	404, 1477
BpuEI	CTTGAG	2 cut(s)	166, 437
BsaAI	YACGTR	1 cut(s)	1387
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	1030
BsaJI	CCNNGG	4 cut(s)	22, 84, 829, 877
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	834, 835
Bse118I	RCCGGY	1 cut(s)	1663
Bse1I	ACTGG	2 cut(s)	649, 790
Bse3DI	GCAATG	3 cut(s)	348, 543, 1658
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	896, 1098
BseDI	CCNNGG	4 cut(s)	22, 84, 829, 877
BseGI	GGATG	3 cut(s)	913, 1021, 1673
BseLI	CCNNNNNNNGG	2 cut(s)	834, 835
BseMI	GCAATG	3 cut(s)	348, 543, 1658
BseMII	CTCAG	3 cut(s)	282, 981, 1025
BseNI	ACTGG	2 cut(s)	649, 790
BsePI	GCGCGC	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	282, 626, 1661
BseYI	CCCAGC	2 cut(s)	152, 374
BsgI	GTGCAG	2 cut(s)	837, 1517
Bsh1236I	CGCG	5 cut(s)	24, 61, 63, 100, 646
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	89, 164, 803
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	336, 1012
BsiSI	CCGG	2 cut(s)	311, 1664
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	834, 835
BsmAI	GTCTC	3 cut(s)	151, 561, 1030
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	3 cut(s)	130, 412, 1579
BsnI	GGCC	3 cut(s)	89, 164, 803
Bso31I	GGTCTC	1 cut(s)	1030
Bsp119I	TTCGAA	2 cut(s)	404, 1477
Bsp1286I	GDGCHC	2 cut(s)	336, 1012
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
Bsp1720I	GCTNAGC	2 cut(s)	291, 990
BspANI	GGCC	3 cut(s)	89, 164, 803
BspCNI	CTCAG	3 cut(s)	283, 982, 1024
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	5 cut(s)	24, 61, 63, 100, 646
BspLI	GGNNCC	1 cut(s)	1308
BspMAI	CTGCAG	1 cut(s)	1401
BspMI	ACCTGC	1 cut(s)	935
BspPI	GGATC	5 cut(s)	473, 758, 926, 1301, 1314
BspT104I	TTCGAA	2 cut(s)	404, 1477
BspTNI	GGTCTC	1 cut(s)	1030
BsrDI	GCAATG	3 cut(s)	348, 543, 1658
BsrFI	RCCGGY	1 cut(s)	1663
BsrI	ACTGG	2 cut(s)	649, 790
BssAI	RCCGGY	1 cut(s)	1663
BssECI	CCNNGG	4 cut(s)	22, 84, 829, 877
BssHII	GCGCGC	1 cut(s)	644
BssMI	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
BssNI	GRCGYC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	2 cut(s)	829, 877
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	896, 1098
Bst4CI	ACNGT	2 cut(s)	460, 1553
Bst6I	CTCTTC	2 cut(s)	195, 1397
BstACI	GRCGYC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	1387
BstBI	TTCGAA	2 cut(s)	404, 1477
BstC8I	GCNNGC	5 cut(s)	65, 646, 884, 996, 1199
BstDEI	CTNAG	4 cut(s)	291, 990, 1011, 1521
BstDSI	CCRYGG	2 cut(s)	22, 84
BstEII	GGTNACC	1 cut(s)	1604
BstF5I	GGATG	3 cut(s)	913, 1021, 1673
BstFNI	CGCG	5 cut(s)	24, 61, 63, 100, 646
BstHHI	GCGC	5 cut(s)	63, 561, 646, 648, 1649
BstKTI	GATC	6 cut(s)	481, 766, 934, 1309, 1409, 1506
BstMAI	GTCTC	3 cut(s)	151, 561, 1030
BstMBI	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 995
BstNI	CCWGG	2 cut(s)	896, 1098
BstNSI	RCATGY	3 cut(s)	132, 598, 1201
BstPAI	GACNNNNGTC	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	1604
BstSCI	CCNGG	2 cut(s)	894, 1096
BstSFI	CTRYAG	1 cut(s)	1397
BstSNI	TACGTA	1 cut(s)	1387
BstUI	CGCG	5 cut(s)	24, 61, 63, 100, 646
BstV1I	GCAGC	3 cut(s)	282, 626, 1661
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	1306
BstYI	RGATCY	1 cut(s)	1306
BsuRI	GGCC	3 cut(s)	89, 164, 803
BtgI	CCRYGG	2 cut(s)	22, 84
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	913, 1021, 1673
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 1558
BveI	ACCTGC	1 cut(s)	935
Cac8I	GCNNGC	5 cut(s)	65, 646, 884, 996, 1199
CfoI	GCGC	5 cut(s)	63, 561, 646, 648, 1649
Cfr10I	RCCGGY	1 cut(s)	1663
Cfr13I	GGNCC	1 cut(s)	162
Cfr42I	CCGCGG	1 cut(s)	25
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	1101, 1622
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	5 cut(s)	129, 595, 1198, 1586, 1678
CviQI	GTAC	2 cut(s)	1101, 1622
DdeI	CTNAG	4 cut(s)	291, 990, 1011, 1521
DpnI	GATC	6 cut(s)	480, 765, 933, 1308, 1408, 1505
DpnII	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
Eam1104I	CTCTTC	2 cut(s)	195, 1397
EarI	CTCTTC	2 cut(s)	195, 1397
EciI	GGCGGA	4 cut(s)	70, 153, 284, 1647
Eco105I	TACGTA	1 cut(s)	1387
Eco130I	CCWWGG	2 cut(s)	829, 877
Eco147I	AGGCCT	1 cut(s)	803
Eco31I	GGTCTC	1 cut(s)	1030
Eco57I	CTGAAG	2 cut(s)	545, 1178
Eco91I	GGTNACC	1 cut(s)	1604
EcoO65I	GGTNACC	1 cut(s)	1604
EcoRII	CCWGG	2 cut(s)	894, 1096
EcoT14I	CCWWGG	2 cut(s)	829, 877
EcoT22I	ATGCAT	2 cut(s)	130, 661
ErhI	CCWWGG	2 cut(s)	829, 877
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	5 cut(s)	132, 598, 1201, 1589, 1681
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	5 cut(s)	128, 594, 1197, 1585, 1677
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	8 cut(s)	25, 48, 59, 114, 296, 615, 987, 1650
FokI	GGATG	3 cut(s)	920, 1008, 1660
Fsp4HI	GCNGC	8 cut(s)	25, 48, 59, 114, 296, 615, 987, 1650
FspBI	CTAG	7 cut(s)	575, 830, 878, 936, 1044, 1454, 1625
FspI	TGCGCA	1 cut(s)	560
GlaI	GCGC	5 cut(s)	62, 560, 645, 647, 1648
GluI	GCNGC	8 cut(s)	25, 48, 59, 114, 296, 615, 987, 1650
GsaI	CCCAGC	2 cut(s)	156, 378
GsuI	CTGGAG	1 cut(s)	1342
HaeIII	GGCC	3 cut(s)	89, 164, 803
HapII	CCGG	2 cut(s)	311, 1664
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	5 cut(s)	63, 561, 646, 648, 1649
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	5 cut(s)	132, 598, 1201, 1589, 1681
Hin6I	GCGC	5 cut(s)	61, 559, 644, 646, 1647
HinP1I	GCGC	5 cut(s)	61, 559, 644, 646, 1647
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	8 cut(s)	42, 171, 553, 606, 772, 1450, 1483, 1635
HpaII	CCGG	2 cut(s)	311, 1664
HphI	GGTGA	5 cut(s)	685, 1064, 1574, 1616, 1647
Hpy166II	GTNNAC	3 cut(s)	552, 600, 1528
Hpy188I	TCNGA	6 cut(s)	248, 415, 525, 624, 797, 1615
Hpy188III	TCNNGA	7 cut(s)	311, 454, 1072, 1156, 1321, 1454, 1639
Hpy8I	GTNNAC	3 cut(s)	552, 600, 1528
Hpy99I	CGWCG	5 cut(s)	72, 100, 226, 259, 268
HpyAV	CCTTC	7 cut(s)	492, 520, 898, 1453, 1589, 1600, 1622
HpyCH4III	ACNGT	2 cut(s)	460, 1553
HpyCH4IV	ACGT	2 cut(s)	1301, 1386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 995
HpyF3I	CTNAG	4 cut(s)	291, 990, 1011, 1521
HpySE526I	ACGT	2 cut(s)	1301, 1386
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	5 cut(s)	132, 598, 1201, 1589, 1681
HspAI	GCGC	5 cut(s)	61, 559, 644, 646, 1647
Kpn2I	TCCGGA	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	25
Kzo9I	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
LmnI	GCTCC	2 cut(s)	514, 1099
Lsp1109I	GCAGC	3 cut(s)	282, 626, 1661
LweI	GCATC	3 cut(s)	457, 646, 1526
MaeI	CTAG	7 cut(s)	575, 830, 878, 936, 1044, 1454, 1625
MaeII	ACGT	2 cut(s)	1301, 1386
MaeIII	GTNAC	3 cut(s)	781, 820, 1604
MalI	GATC	6 cut(s)	480, 765, 933, 1308, 1408, 1505
MboI	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
MflI	RGATCY	1 cut(s)	1306
MhlI	GDGCHC	2 cut(s)	336, 1012
MluCI	AATT	8 cut(s)	242, 425, 509, 705, 1316, 1335, 1377, 1616
MlyI	GAGTC	2 cut(s)	36, 547
MmeI	TCCRAC	2 cut(s)	1158, 1284
Mph1103I	ATGCAT	2 cut(s)	130, 661
MroI	TCCGGA	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	1335
MseI	TTAA	3 cut(s)	639, 743, 1491
MslI	CAYNNNNRTG	1 cut(s)	1196
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	311, 1664
MspR9I	CCNGG	2 cut(s)	896, 1098
Mva1269I	GAATGC	3 cut(s)	130, 412, 1579
MvaI	CCWGG	2 cut(s)	896, 1098
MvnI	CGCG	5 cut(s)	24, 61, 63, 100, 646
MwoI	GCNNNNNNNGC	2 cut(s)	64, 995
NdeII	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
NlaIII	CATG	5 cut(s)	132, 598, 1201, 1589, 1681
NlaIV	GGNNCC	1 cut(s)	1308
NmuCI	GTSAC	1 cut(s)	1604
NsbI	TGCGCA	1 cut(s)	560
NsiI	ATGCAT	2 cut(s)	130, 661
NspI	RCATGY	3 cut(s)	132, 598, 1201
NspV	TTCGAA	2 cut(s)	404, 1477
PaeI	GCATGC	1 cut(s)	1201
PalAI	GGCGCGCC	1 cut(s)	644
PauI	GCGCGC	1 cut(s)	644
PceI	AGGCCT	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	3 cut(s)	130, 412, 1579
PdmI	GAANNNNTTC	1 cut(s)	1335
PfeI	GAWTC	6 cut(s)	171, 606, 772, 1450, 1483, 1635
PkrI	GCNGC	8 cut(s)	26, 49, 60, 115, 297, 616, 988, 1651
PleI	GAGTC	2 cut(s)	36, 547
PpsI	GAGTC	2 cut(s)	36, 547
Ppu21I	YACGTR	1 cut(s)	1387
PshAI	GACNNNNGTC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	1083
Psp6I	CCWGG	2 cut(s)	894, 1096
PspEI	GGTNACC	1 cut(s)	1604
PspFI	CCCAGC	2 cut(s)	152, 374
PspGI	CCWGG	2 cut(s)	894, 1096
PspN4I	GGNNCC	1 cut(s)	1308
PspPI	GGNCC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	1401
PsuI	RGATCY	1 cut(s)	1306
PteI	GCGCGC	1 cut(s)	644
RsaI	GTAC	2 cut(s)	1102, 1623
RsaNI	GTAC	2 cut(s)	1101, 1622
RseI	CAYNNNNRTG	1 cut(s)	1196
SacII	CCGCGG	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	639, 743, 1491
SatI	GCNGC	8 cut(s)	25, 48, 59, 114, 296, 615, 987, 1650
Sau3AI	GATC	6 cut(s)	478, 763, 931, 1306, 1406, 1503
Sau96I	GGNCC	1 cut(s)	162
ScaI	AGTACT	1 cut(s)	1623
SchI	GAGTC	2 cut(s)	36, 547
ScrFI	CCNGG	2 cut(s)	896, 1098
SduI	GDGCHC	2 cut(s)	336, 1012
SfaNI	GCATC	3 cut(s)	457, 646, 1526
SfcI	CTRYAG	1 cut(s)	1397
Sfr303I	CCGCGG	1 cut(s)	25
SfuI	TTCGAA	2 cut(s)	404, 1477
SgrBI	CCGCGG	1 cut(s)	25
SgsI	GGCGCGCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	1196
SmlI	CTYRAG	2 cut(s)	145, 452
SmoI	CTYRAG	2 cut(s)	145, 452
SnaBI	TACGTA	1 cut(s)	1387
SphI	GCATGC	1 cut(s)	1201
Sse9I	AATT	8 cut(s)	242, 425, 509, 705, 1316, 1335, 1377, 1616
SseBI	AGGCCT	1 cut(s)	803
SspMI	CTAG	7 cut(s)	575, 830, 878, 936, 1044, 1454, 1625
StuI	AGGCCT	1 cut(s)	803
StyD4I	CCNGG	2 cut(s)	894, 1096
StyI	CCWWGG	2 cut(s)	829, 877
TaaI	ACNGT	2 cut(s)	460, 1553
TaiI	ACGT	2 cut(s)	1304, 1389
TaqI	TCGA	6 cut(s)	174, 404, 420, 978, 1263, 1477
TasI	AATT	8 cut(s)	242, 425, 509, 705, 1316, 1335, 1377, 1616
TatI	WGTACW	1 cut(s)	1621
TauI	GCSGC	5 cut(s)	27, 50, 61, 116, 989
TfiI	GAWTC	6 cut(s)	171, 606, 772, 1450, 1483, 1635
Tru1I	TTAA	3 cut(s)	639, 743, 1491
Tru9I	TTAA	3 cut(s)	639, 743, 1491
TscAI	CASTG	2 cut(s)	18, 1558
TseFI	GTSAC	1 cut(s)	1604
TseI	GCWGC	3 cut(s)	295, 614, 1649
Tsp45I	GTSAC	1 cut(s)	1604
TspDTI	ATGAA	7 cut(s)	228, 254, 480, 557, 570, 664, 1434
TspRI	CASTG	2 cut(s)	18, 1558
XapI	RAATTY	3 cut(s)	242, 705, 1316
XbaI	TCTAGA	1 cut(s)	1453
XceI	RCATGY	3 cut(s)	132, 598, 1201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1317
XmaJI	CCTAGG	2 cut(s)	829, 877
XmnI	GAANNNNTTC	1 cut(s)	1335
XspI	CTAG	7 cut(s)	575, 830, 878, 936, 1044, 1454, 1625
ZrmI	AGTACT	1 cut(s)	1623
Zsp2I	ATGCAT	2 cut(s)	130, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.