Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009556

Physical Location & Seq

Genomic Coordinates Forward (+)

42382365 .. 42385097

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0251000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTCGATTGGAAACTCCAAGTGTTATGTTCGATTGGAAACTCCAAGTGTTACCTGTCATTAACTGAATTAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACACTCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTAAAAGAAACGTGGCAGGAGAAGAGTGAGCGGAATGCAATTAATCGTGACAAATCAACTATGGTGCATACAACGGGTTCAGTTCCAATGGCGAAGTACATAAAAGAGGAGATTGATAAGACTGGAGTTGAACCGAGTCCAATAGAGATGTTTAGAAGGTTTCATATTTCTAAGCCTAAAGATGGAAAACCGGAACATTGGCAAAGTGAGAAGGCAAAGGATCTTTATGAATGTATGGAATTGCAAAAACGTATAGAGGAGACTTTGGGTGGTGATGGCGAAGACGAATTGGATGATTGGGACATATACAAGGAGGTGGTTGGTGGGTCTAAACATGGCAAAATTCGTGGCTTAGGTGACAGAATGGAACCATCGGAAGATGTGTGCGGTTCGAGTAGCAGCCAAACTTGCAATAAGCGCGTGTGTTTGGAACGTGACAAAGAGTTTGGACAATTGGAACAACAAGTTCATACTCTTACGGATATGGTGGCTGATTTGAAACAAGTCCTTCAAGCTTTCATGGCAAATAGTTCAAGTCATTCTCAATTTGCGAGAGAATCACCGTTTTCAGATAAAACTTCAGGCTTCCCAGGGGCTTCATCTGCTGAGCCTGCTTCTACTAATGGAGATTCTGAAACACATACACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005047 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005786 GO:0005829 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0012505 GO:0015031 GO:0015833 GO:0019904 GO:0030911 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042493 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP72 SRP_TPR_like

Protein Analysis

275

Amino Acids

31.16

Weight (kDa)

5.59

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	49 - 183	3.1e-19	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67650 AT1G67680
fragaria_vesca	FvH4_4g24580 FvH4_4g24580 FvH4_4g24580
malus_domestica	MD13G1110100.v1.1 MD16G1110000.v1.1
prunus_persica	Prupe.1G234800_v2.0.a1 Prupe.1G234800_v2.0.a1
pyrus_communis	pycom13g09580 pycom16g09350
rosa_chinensis	RchiOBHm_Chr4g0431561 RchiOBHm_Chr4g0431581
rosa_laevigata	RLG00000006906
rosa_multiflora	Rmu_sc0008423.1_g000002
rosa_roxburghii	Rroxscaffold_5G00373040
rosa_rugosa	Rorug04G0251000
rosa_samantha	Rh4AG307700 Rh4BG315300 Rh4CG330800 Rh4DG310200
rosa_wichuraiana	Rw4G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	1 cut(s)	597
AciI	CCGC	3 cut(s)	91, 208, 564
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	142, 308, 676, 689, 711
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	2 cut(s)	113, 692
AluI	AGCT	2 cut(s)	113, 692
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	107, 110, 576
ApoI	RAATTY	1 cut(s)	519
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AseI	ATTAAT	2 cut(s)	71, 219
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	461, 545, 729
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	94, 122, 588
BccI	CCATC	3 cut(s)	353, 446, 556
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	3 cut(s)	108, 111, 577
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	3 cut(s)	109, 112, 578
Bme1390I	CCNGG	1 cut(s)	768
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	529
Bpu1102I	GCTNAGC	1 cut(s)	783
BsaJI	CCNNGG	2 cut(s)	766, 767
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	766, 767
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	299, 449
BseXI	GCAGC	3 cut(s)	94, 122, 588
Bsh1236I	CGCG	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	397
Bsp1720I	GCTNAGC	1 cut(s)	783
BspACI	CCGC	3 cut(s)	91, 208, 564
BspCNI	CTCAG	1 cut(s)	775
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	766, 767
BssMI	GATC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	1 cut(s)	741
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	3 cut(s)	348, 529, 783
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 585, 594, 698, 779, 788
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	94, 122, 588
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	789
CfoI	GCGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	2 cut(s)	512, 697
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	3 cut(s)	348, 529, 783
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	766
FaeI	CATG	2 cut(s)	515, 700
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	2 cut(s)	511, 696
Fnu4HI	GCNGC	3 cut(s)	108, 111, 577
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	108, 111, 577
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	3 cut(s)	108, 111, 577
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	2 cut(s)	515, 700
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	3 cut(s)	313, 734, 806
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	461, 545, 729
Hpy188I	TCNGA	4 cut(s)	78, 553, 748, 811
Hpy188III	TCNNGA	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	327, 382, 695
HpyCH4III	ACNGT	1 cut(s)	741
HpyCH4IV	ACGT	3 cut(s)	188, 427, 610
HpyCH4V	TGCA	5 cut(s)	110, 215, 244, 421, 588
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 585, 594, 698, 779, 788
HpyF3I	CTNAG	3 cut(s)	348, 529, 783
HpySE526I	ACGT	3 cut(s)	188, 427, 610
Hsp92II	CATG	2 cut(s)	515, 700
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	397
LpnPI	CCDG	9 cut(s)	68, 159, 179, 285, 381, 744, 753, 780, 801
Lsp1109I	GCAGC	3 cut(s)	94, 122, 588
MaeII	ACGT	3 cut(s)	188, 427, 610
MaeIII	GTNAC	4 cut(s)	50, 224, 533, 611
MalI	GATC	1 cut(s)	399
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	211, 470, 566
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	8 cut(s)	68, 72, 216, 416, 464, 519, 629, 722
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	3 cut(s)	277, 427, 484
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	62, 71, 219
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	6 cut(s)	119, 585, 594, 698, 779, 788
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	515, 700
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	3 cut(s)	224, 533, 611
PasI	CCCWGGG	1 cut(s)	767
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	734, 806
PkrI	GCNGC	3 cut(s)	109, 112, 578
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PshBI	ATTAAT	2 cut(s)	71, 219
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	546
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	62, 71, 219
SatI	GCNGC	3 cut(s)	108, 111, 577
Sau3AI	GATC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	768
SfcI	CTRYAG	1 cut(s)	108
Sse9I	AATT	8 cut(s)	68, 72, 216, 416, 464, 519, 629, 722
SsiI	CCGC	3 cut(s)	91, 208, 564
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	1 cut(s)	741
TaiI	ACGT	3 cut(s)	191, 430, 613
TaqI	TCGA	4 cut(s)	6, 32, 115, 569
TasI	AATT	8 cut(s)	68, 72, 216, 416, 464, 519, 629, 722
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	734, 806
Tru1I	TTAA	3 cut(s)	62, 71, 219
Tru9I	TTAA	3 cut(s)	62, 71, 219
TseFI	GTSAC	3 cut(s)	224, 533, 611
TseI	GCWGC	3 cut(s)	107, 110, 576
Tsp45I	GTSAC	3 cut(s)	224, 533, 611
TspDTI	ATGAA	6 cut(s)	186, 329, 420, 635, 685, 765
TspGWI	ACGGA	2 cut(s)	120, 671
VspI	ATTAAT	2 cut(s)	71, 219
XapI	RAATTY	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.