Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009556

Physical Location & Seq

Genomic Coordinates Forward (+)

61950129 .. 61954174

Gene Structure 4046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGCTATTAGAAGCCCAGATCTTATTTCGCTTGGGAAAGTTTGATGCTTGTATCGACATATATCAGAAGCTTCAAAAGTCCAAAGTTGACTTATTAGATACAAATTATGTAGCTAGCTTGGTTGCTGCTGGGAGGGCTTCTGAAGTACAAGTTGAAGCACTCAGGGGTAAAGCAAAGAGTAGCTTTGAGCTAGCATTCAACACTGCCTGTTCTTTGATTGAAAGCAATAAGTACACTGATGCAGAGCAGTTCCTGTTGCTAGCCAGAACAACCGGCCATGAAGCATTGCTGGAAGATGGTGCACCCGAGGATGAGATAGAAACTGAATTGGCGCCAATAGCTGTCCAGTTGGCCTATGTTCAGCAGCTCCTTGGGCACAGACAAGAGGCCCTTGAGGCCTACACGCACATCATTAAATCAGATGTGGGAGATGAGTTATCACTTGCAGTGGCAGTCAACAACCTAATAGCTTTGAGAAGTCCAAAAGATGTTTCTGATGGCCTAAAGAAACTTGATCGATTAAAACAGAAGGACGACAAGCAAAGCTTCCACCTTACTGGTAAACTGGACTCGAAGCTTTCACCAAAACAAAAAGAATCAATATATGTGACTCGGGTCCTCTTACTTCTCCATGCAAATAAGATGGATCAGGCTCGAGAACTTGTTGCTGCACTTCCAGACATGTTTTCCGAGAGTGTGATGCCTGTTCTACTTCAGGCCGCACTTTTTGTAAGAGAAAACAAGGCTGGAAAAGCTGAAGAAGTTTTAGCCCAGTTTTCCGAGAAGTTCCCTGAAAAGTCCAAGGTTTTTCTCTTAGCAAGGGCACAGGTTGCTGCTGCTGCCAGCCACCCTCATATTGCCGCGGAGTCCCTTTCTAAGATACCTGATATCCAGCACATGCCTGCTACTGTTGCTACTCTTGTGTCTCTTAAAGAGCGTGCTGGTGACATTGATGGCGCTGCTGCTGTGCTTGACGCTGCAATAAACTGGTGGTCAAATTCCATGACCGAGGACAACAAGCTCAATGTTTTGATGCAAGAGGCTGCTTCCTTCAAGCTGAGGCATGGACGAGAAGAGGAAGCTTCTCGTCTATATGAGGAGCTTGTGAAAAGCCATGGAAGTGTGGAAGCATTGGTTGGGCTTGTAACTACAGTTGCTCGAGTGGATGTTAAGAAGGCAGAAGCTTATGAGCAGAAGCTGAAACCATTACCAGGTTTGAAGGGGATCAATGTGGATAATCTAGAGAAGACTTCTGGTGCCAAACATGAAGAGGGTATTTCTCAAGTTAAGGTTGCCGAGACATATGAGGGGAAGAGCAAGTCAAAGGCAAAGAAAAAGAGAAAGAGAAAGCCAAGATATCCTAAAGGGTTTGACCCTGCGAACCCCGGGCCGCCACCGGATCCAGAAAGGTGGCTTCCCAAGAGAGAAAGATCAAGTTATAGGCCTAAGAGAAAGGATAAGAGAGCAGCTGCTCAAGTACGAGGCTCTCAGGGTTCTGTAGCTAGAGACAAACATGAAGCTGGTGCCACTTCCAGCAATGCAAAATCAAACCAAGCAGCCACTTCAAAAGGAGCCTCACAGAATTCAGTTGCAGAGCCATCGAAGACTTCATCCAAGTCAAGAAAAAAGTCCAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005047 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005786 GO:0005829 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0012505 GO:0015031 GO:0015833 GO:0019904 GO:0030911 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042493 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP72 SRP_TPR_like

Protein Analysis

546

Amino Acids

59.91

Weight (kDa)

9.31

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP72	PF08492	435 - 482	1.9e-16	SRP72 RNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67650 AT1G67680
fragaria_vesca	FvH4_4g24580 FvH4_4g24580 FvH4_4g24580
malus_domestica	MD13G1110100.v1.1 MD16G1110000.v1.1
prunus_persica	Prupe.1G234800_v2.0.a1 Prupe.1G234800_v2.0.a1
pyrus_communis	pycom13g09580 pycom16g09350
rosa_chinensis	RchiOBHm_Chr4g0431561 RchiOBHm_Chr4g0431581
rosa_laevigata	RLG00000006906
rosa_multiflora	Rmu_sc0008423.1_g000002
rosa_roxburghii	Rroxscaffold_5G00373040
rosa_rugosa	Rorug04G0251000
rosa_samantha	Rh4AG307700 Rh4BG315300 Rh4CG330800 Rh4DG310200
rosa_wichuraiana	Rw4G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	331, 1256, 1523
AccII	CGCG	1 cut(s)	863
AciI	CCGC	4 cut(s)	720, 861, 863, 1391
AclWI	GGATC	4 cut(s)	654, 1232, 1394, 1407
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	997, 1582
AcuI	CTGAAG	3 cut(s)	162, 698, 777
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	147, 233, 1479
AfiI	CCNNNNNNNGG	1 cut(s)	1211
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	7 cut(s)	74, 155, 199, 221, 1054, 1219, 1566
AjnI	CCWGG	2 cut(s)	1210, 1631
AjuI	GAANNNNNNNTTGG	4 cut(s)	475, 507, 1119, 1151
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	930, 1292, 1500
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	4 cut(s)	654, 1232, 1394, 1407
AlwNI	CAGNNNCTG	2 cut(s)	253, 1198
Ama87I	CYCGRG	5 cut(s)	305, 612, 654, 1158, 1385
AoxI	GGCC	8 cut(s)	274, 351, 387, 396, 499, 717, 1388, 1442
ApaLI	GTGCAC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	997, 1582
AspLEI	GCGC	2 cut(s)	334, 959
AspS9I	GGNCC	3 cut(s)	388, 616, 1388
AsuC2I	CCSGG	2 cut(s)	1386, 1387
AsuHPI	GGTGA	2 cut(s)	573, 956
AsuNHI	GCTAGC	3 cut(s)	113, 190, 259
AvaI	CYCGRG	5 cut(s)	305, 612, 654, 1158, 1385
AvaII	GGWCC	1 cut(s)	616
BaeGI	GKGCMC	3 cut(s)	304, 378, 826
BamHI	GGATCC	1 cut(s)	1399
BanI	GGYRCC	3 cut(s)	331, 1256, 1523
BbsI	GAAGAC	2 cut(s)	1253, 1610
Bbv12I	GWGCWC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	1058
BccI	CCATC	5 cut(s)	290, 491, 637, 947, 1606
BcgI	CGANNNNNNTGC	2 cut(s)	1581, 1615
BciT130I	CCWGG	2 cut(s)	1212, 1633
BcnI	CCSGG	2 cut(s)	1386, 1387
BcoDI	GTCTC	3 cut(s)	930, 1292, 1500
BfaI	CTAG	6 cut(s)	114, 191, 260, 1241, 1503, 1639
BfmI	CTRYAG	2 cut(s)	1149, 1497
BfoI	RGCGCY	2 cut(s)	335, 960
BglI	GCCNNNNNGGC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	18
Bme1390I	CCNGG	4 cut(s)	1212, 1386, 1387, 1633
Bme18I	GGWCC	1 cut(s)	616
BmeT110I	CYCGRG	5 cut(s)	305, 612, 654, 1158, 1385
BmgT120I	GGNCC	3 cut(s)	388, 616, 1388
BmiI	GGNNCC	6 cut(s)	333, 617, 1258, 1401, 1525, 1573
BmrFI	CCNGG	4 cut(s)	1212, 1386, 1387, 1633
BmrI	ACTGGG	1 cut(s)	766
BmsI	GCATC	4 cut(s)	34, 229, 690, 1023
BmtI	GCTAGC	3 cut(s)	117, 194, 263
BmuI	ACTGGG	1 cut(s)	766
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	1253, 1610
Bpu10I	CCTNAGC	1 cut(s)	1058
BpuEI	CTTGAG	3 cut(s)	413, 1266, 1458
BpuMI	CCSGG	2 cut(s)	1386, 1387
Bsa29I	ATCGAT	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	8 cut(s)	306, 370, 801, 861, 1008, 1114, 1384, 1385
BsaWI	WCCGGW	1 cut(s)	1396
Bsc4I	CCNNNNNNNGG	1 cut(s)	1211
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	5 cut(s)	346, 562, 570, 772, 992
Bse3DI	GCAATG	2 cut(s)	284, 1543
BseBI	CCWGG	2 cut(s)	1212, 1633
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	8 cut(s)	306, 370, 801, 861, 1008, 1114, 1384, 1385
BseGI	GGATG	3 cut(s)	316, 1171, 1610
BseLI	CCNNNNNNNGG	1 cut(s)	1211
BseMI	GCAATG	2 cut(s)	284, 1543
BseMII	CTCAG	3 cut(s)	175, 1049, 1502
BseNI	ACTGG	5 cut(s)	346, 562, 570, 772, 992
BseRI	GAGGAG	1 cut(s)	1112
BseSI	GKGCMC	3 cut(s)	304, 378, 826
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	863
BshFI	GGCC	8 cut(s)	276, 353, 389, 398, 501, 719, 1390, 1444
BshNI	GGYRCC	3 cut(s)	331, 1256, 1523
BshVI	ATCGAT	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	5 cut(s)	305, 612, 654, 1158, 1385
BsiSI	CCGG	3 cut(s)	273, 1386, 1397
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	1 cut(s)	1211
BsmAI	GTCTC	3 cut(s)	930, 1292, 1500
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	8 cut(s)	276, 353, 389, 398, 501, 719, 1390, 1444
BsoBI	CYCGRG	5 cut(s)	305, 612, 654, 1158, 1385
Bsp1286I	GDGCHC	3 cut(s)	304, 378, 826
Bsp143I	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
Bsp19I	CCATGG	1 cut(s)	1114
BspACI	CCGC	4 cut(s)	720, 861, 863, 1391
BspANI	GGCC	8 cut(s)	276, 353, 389, 398, 501, 719, 1390, 1444
BspCNI	CTCAG	3 cut(s)	174, 1050, 1501
BspDI	ATCGAT	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	863
BspLI	GGNNCC	6 cut(s)	333, 617, 1258, 1401, 1525, 1573
BspOI	GCTAGC	3 cut(s)	117, 194, 263
BspPI	GGATC	4 cut(s)	654, 1232, 1394, 1407
BspQI	GCTCTTC	1 cut(s)	1307
BspT107I	GGYRCC	3 cut(s)	331, 1256, 1523
BsrDI	GCAATG	2 cut(s)	284, 1543
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	5 cut(s)	346, 562, 570, 772, 992
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	8 cut(s)	306, 370, 801, 861, 1008, 1114, 1384, 1385
BssMI	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	3 cut(s)	370, 801, 1114
Bst2UI	CCWGG	2 cut(s)	1212, 1633
Bst4CI	ACNGT	2 cut(s)	910, 1153
Bst6I	CTCTTC	3 cut(s)	1068, 1263, 1307
BstACI	GRCGYC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstC8I	GCNNGC	6 cut(s)	115, 192, 261, 844, 903, 939
BstDEI	CTNAG	6 cut(s)	161, 814, 876, 1058, 1446, 1488
BstDSI	CCRYGG	2 cut(s)	861, 1114
BstF5I	GGATG	3 cut(s)	316, 1171, 1610
BstFNI	CGCG	1 cut(s)	863
BstH2I	RGCGCY	2 cut(s)	335, 960
BstHHI	GCGC	2 cut(s)	334, 959
BstKTI	GATC	6 cut(s)	21, 517, 649, 1227, 1402, 1433
BstMAI	GTCTC	3 cut(s)	930, 1292, 1500
BstMBI	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 338, 373, 395, 752, 830, 839, 911
BstNI	CCWGG	2 cut(s)	1212, 1633
BstNSI	RCATGY	2 cut(s)	685, 901
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	4 cut(s)	1210, 1384, 1385, 1631
BstSFI	CTRYAG	2 cut(s)	1149, 1497
BstSLI	GKGCMC	3 cut(s)	304, 378, 826
BstUI	CGCG	1 cut(s)	863
BstV2I	GAAGAC	2 cut(s)	1253, 1610
BstX2I	RGATCY	2 cut(s)	18, 1399
BstXI	CCANNNNNNTGG	2 cut(s)	557, 1410
BstYI	RGATCY	2 cut(s)	18, 1399
Bsu15I	ATCGAT	1 cut(s)	517
BsuRI	GGCC	8 cut(s)	276, 353, 389, 398, 501, 719, 1390, 1444
BsuTUI	ATCGAT	1 cut(s)	517
BtgI	CCRYGG	2 cut(s)	861, 1114
BtsCI	GGATG	3 cut(s)	316, 1171, 1610
BtsI	GCAGTG	2 cut(s)	201, 453
BtsIMutI	CAGTG	3 cut(s)	201, 234, 453
Cac8I	GCNNGC	6 cut(s)	115, 192, 261, 844, 903, 939
CaiI	CAGNNNCTG	2 cut(s)	253, 1198
CfoI	GCGC	2 cut(s)	334, 959
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	388, 616, 1388
Cfr42I	CCGCGG	1 cut(s)	864
Cfr9I	CCCGGG	1 cut(s)	1385
ClaI	ATCGAT	1 cut(s)	517
CseI	GACGC	1 cut(s)	983
CsiI	ACCWGGT	1 cut(s)	1210
Csp6I	GTAC	3 cut(s)	146, 232, 1478
CviAII	CATG	9 cut(s)	278, 632, 682, 898, 1003, 1064, 1115, 1265, 1514
CviQI	GTAC	3 cut(s)	146, 232, 1478
DdeI	CTNAG	6 cut(s)	161, 814, 876, 1058, 1446, 1488
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	6 cut(s)	20, 516, 648, 1226, 1401, 1432
DpnII	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	3 cut(s)	1068, 1263, 1307
EarI	CTCTTC	3 cut(s)	1068, 1263, 1307
Eco130I	CCWWGG	3 cut(s)	370, 801, 1114
Eco147I	AGGCCT	2 cut(s)	398, 1444
Eco32I	GATATC	2 cut(s)	889, 1358
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	3 cut(s)	162, 698, 777
Eco88I	CYCGRG	5 cut(s)	305, 612, 654, 1158, 1385
EcoO109I	RGGNCCY	2 cut(s)	388, 616
EcoRI	GAATTC	1 cut(s)	1582
EcoRII	CCWGG	2 cut(s)	1210, 1631
EcoRV	GATATC	2 cut(s)	889, 1358
EcoT14I	CCWWGG	3 cut(s)	370, 801, 1114
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
ErhI	CCWWGG	3 cut(s)	370, 801, 1114
FaeI	CATG	9 cut(s)	281, 635, 685, 901, 1006, 1067, 1118, 1268, 1517
FalI	AAGNNNNNCTT	6 cut(s)	167, 199, 375, 407, 530, 562
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	9 cut(s)	277, 631, 681, 897, 1002, 1063, 1114, 1264, 1513
FauNDI	CATATG	1 cut(s)	1303
FokI	GGATG	3 cut(s)	323, 1178, 1597
FspBI	CTAG	6 cut(s)	114, 191, 260, 1241, 1503, 1639
GlaI	GCGC	2 cut(s)	333, 958
GsaI	CCCAGC	1 cut(s)	132
HaeII	RGCGCY	2 cut(s)	335, 960
HaeIII	GGCC	8 cut(s)	276, 353, 389, 398, 501, 719, 1390, 1444
HapII	CCGG	3 cut(s)	273, 1386, 1397
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	2 cut(s)	334, 959
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	9 cut(s)	281, 635, 685, 901, 1006, 1067, 1118, 1268, 1517
Hin6I	GCGC	2 cut(s)	332, 957
HinP1I	GCGC	2 cut(s)	332, 957
HincII	GTYRAC	2 cut(s)	88, 457
HindII	GTYRAC	2 cut(s)	88, 457
HindIII	AAGCTT	5 cut(s)	68, 544, 575, 1080, 1182
HinfI	GANTC	4 cut(s)	569, 596, 610, 866
HpaII	CCGG	3 cut(s)	273, 1386, 1397
HphI	GGTGA	2 cut(s)	573, 956
Hpy166II	GTNNAC	5 cut(s)	88, 234, 302, 457, 563
Hpy188I	TCNGA	6 cut(s)	66, 142, 421, 496, 691, 781
Hpy188III	TCNNGA	5 cut(s)	656, 677, 1241, 1403, 1620
Hpy8I	GTNNAC	5 cut(s)	88, 234, 302, 457, 563
HpyAV	CCTTC	4 cut(s)	523, 1060, 1168, 1213
HpyCH4III	ACNGT	2 cut(s)	910, 1153
HpyCH4V	TGCA	9 cut(s)	242, 302, 446, 635, 671, 980, 1036, 1541, 1592
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 338, 373, 395, 752, 830, 839, 911
HpyF3I	CTNAG	6 cut(s)	161, 814, 876, 1058, 1446, 1488
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	9 cut(s)	281, 635, 685, 901, 1006, 1067, 1118, 1268, 1517
HspAI	GCGC	2 cut(s)	332, 957
KasI	GGCGCC	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	3 cut(s)	372, 1099, 1571
LweI	GCATC	4 cut(s)	34, 229, 690, 1023
MabI	ACCWGGT	1 cut(s)	1210
MaeI	CTAG	6 cut(s)	114, 191, 260, 1241, 1503, 1639
MaeIII	GTNAC	3 cut(s)	607, 944, 1144
MalI	GATC	6 cut(s)	20, 516, 648, 1226, 1401, 1432
MboI	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
MboII	GAAGA	7 cut(s)	305, 770, 1085, 1258, 1280, 1324, 1615
MflI	RGATCY	2 cut(s)	18, 1399
MhlI	GDGCHC	3 cut(s)	304, 378, 826
MluCI	AATT	4 cut(s)	103, 326, 997, 1582
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	3 cut(s)	563, 604, 875
MseI	TTAA	5 cut(s)	414, 521, 930, 1170, 1287
MslI	CAYNNNNRTG	1 cut(s)	1119
MspA1I	CMGCKG	2 cut(s)	863, 1469
MspI	CCGG	3 cut(s)	273, 1386, 1397
MspR9I	CCNGG	4 cut(s)	1212, 1386, 1387, 1633
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	1212, 1633
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	8 cut(s)	134, 338, 373, 395, 752, 830, 839, 911
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	2 cut(s)	1386, 1387
NcoI	CCATGG	1 cut(s)	1114
NdeI	CATATG	1 cut(s)	1303
NdeII	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
NheI	GCTAGC	3 cut(s)	113, 190, 259
NlaIII	CATG	9 cut(s)	281, 635, 685, 901, 1006, 1067, 1118, 1268, 1517
NlaIV	GGNNCC	6 cut(s)	333, 617, 1258, 1401, 1525, 1573
NmeAIII	GCCGAG	1 cut(s)	1321
NmuCI	GTSAC	2 cut(s)	607, 944
NspI	RCATGY	2 cut(s)	685, 901
PaeR7I	CTCGAG	2 cut(s)	654, 1158
PceI	AGGCCT	2 cut(s)	398, 1444
PciI	ACATGT	1 cut(s)	681
PciSI	GCTCTTC	1 cut(s)	1307
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	1631
PleI	GAGTC	3 cut(s)	563, 604, 874
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	3 cut(s)	563, 604, 874
PpuMI	RGGWCCY	1 cut(s)	616
PscI	ACATGT	1 cut(s)	681
PshAI	GACNNNNGTC	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	1210, 1631
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	1210, 1631
PspN4I	GGNNCC	6 cut(s)	333, 617, 1258, 1401, 1525, 1573
PspPI	GGNCC	3 cut(s)	388, 616, 1388
PspPPI	RGGWCCY	1 cut(s)	616
PspXI	VCTCGAGB	1 cut(s)	1158
PstNI	CAGNNNCTG	2 cut(s)	253, 1198
PsuI	RGATCY	2 cut(s)	18, 1399
PvuII	CAGCTG	1 cut(s)	1469
RsaI	GTAC	3 cut(s)	147, 233, 1479
RsaNI	GTAC	3 cut(s)	146, 232, 1478
RseI	CAYNNNNRTG	1 cut(s)	1119
SacII	CCGCGG	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	1307
SaqAI	TTAA	5 cut(s)	414, 521, 930, 1170, 1287
Sau3AI	GATC	6 cut(s)	18, 514, 646, 1224, 1399, 1430
Sau96I	GGNCC	3 cut(s)	388, 616, 1388
SchI	GAGTC	3 cut(s)	563, 604, 875
ScrFI	CCNGG	4 cut(s)	1212, 1386, 1387, 1633
SduI	GDGCHC	3 cut(s)	304, 378, 826
SexAI	ACCWGGT	1 cut(s)	1210
SfaNI	GCATC	4 cut(s)	34, 229, 690, 1023
SfcI	CTRYAG	2 cut(s)	1149, 1497
SfiI	GGCCNNNNNGGCC	1 cut(s)	395
SfoI	GGCGCC	1 cut(s)	333
Sfr274I	CTCGAG	2 cut(s)	654, 1158
Sfr303I	CCGCGG	1 cut(s)	864
SgrBI	CCGCGG	1 cut(s)	864
SinI	GGWCC	1 cut(s)	616
SlaI	CTCGAG	2 cut(s)	654, 1158
SmaI	CCCGGG	1 cut(s)	1387
SmiMI	CAYNNNNRTG	1 cut(s)	1119
SmlI	CTYRAG	5 cut(s)	392, 654, 1158, 1281, 1473
SmoI	CTYRAG	5 cut(s)	392, 654, 1158, 1281, 1473
Sse9I	AATT	4 cut(s)	103, 326, 997, 1582
SseBI	AGGCCT	2 cut(s)	398, 1444
SsiI	CCGC	4 cut(s)	720, 861, 863, 1391
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	6 cut(s)	114, 191, 260, 1241, 1503, 1639
StuI	AGGCCT	2 cut(s)	398, 1444
StyD4I	CCNGG	4 cut(s)	1210, 1384, 1385, 1631
StyI	CCWWGG	3 cut(s)	370, 801, 1114
TaaI	ACNGT	2 cut(s)	910, 1153
TaqI	TCGA	6 cut(s)	54, 517, 572, 655, 1159, 1601
TaqII	GACCGA	1 cut(s)	1022
TasI	AATT	4 cut(s)	103, 326, 997, 1582
TatI	WGTACW	2 cut(s)	145, 231
TauI	GCSGC	3 cut(s)	722, 863, 1393
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	5 cut(s)	414, 521, 930, 1170, 1287
Tru9I	TTAA	5 cut(s)	414, 521, 930, 1170, 1287
TscAI	CASTG	3 cut(s)	208, 241, 453
TseFI	GTSAC	2 cut(s)	607, 944
Tsp45I	GTSAC	2 cut(s)	607, 944
TspDTI	ATGAA	4 cut(s)	294, 1281, 1530, 1599
TspMI	CCCGGG	1 cut(s)	1385
TspRI	CASTG	3 cut(s)	208, 241, 453
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	2 cut(s)	997, 1582
XbaI	TCTAGA	1 cut(s)	1240
XceI	RCATGY	2 cut(s)	685, 901
XhoI	CTCGAG	2 cut(s)	654, 1158
XmaI	CCCGGG	1 cut(s)	1385
XspI	CTAG	6 cut(s)	114, 191, 260, 1241, 1503, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.