Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009556

Physical Location & Seq

Genomic Coordinates Forward (+)

48276017 .. 48280062

Gene Structure 4046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGGCTCCCAAGCTCAAAGACAAGCAGCAGAAGCCTCCTCCGCCGCCCATGGAGGATCTCTTCGCCACTCTCAACGGCCACATCGAGCAACTGGAGTTCGAGAAAGCGGTCAAAGTCGCAGATCAAGTTCTGTCGATTGCTCCTGGAGACGAGGACGCGATTAAGTGCAAGGTCGTTGGTTTGATCAAGGACGATAAGACCAAAGAGGCGCTTTCCGTGATTCGATCTTGCAAGAATCCTTCTCTGGATTTCAGCTTCTTCAAGGCATACTGCTTATACAGAGAAAACGAGTTAGATGAAGCTCTTAAATCCCTGAAAAGCCAAGAGACAACTCCTGCAGCAATGCTATTAGAAGCCCAGATCTTATTTCGCTTGGGAAAGTTTGATGCTTGTATCGACATATATCAGAAGCTTCAAAAGTCCAAAGTTGACTTATTAGATACAAATTATGTAGCTAGCTTGGTTGCTGCTGGGAGGGCTTCTGAAGTACAAGTTGAAGCACTCAGGGGTAAAGCAAAGAGTAGCTTTGAGCTAGCATTCAACACTGCCTGTTCTTTGATTGAAAGCAATAAGTACACTGATGCAGAGCAGTTCCTGTTGCTAGCCAGAACAACCGGCCATGAAGCATTGCTGGAAGATGGTGCACCCGAGGATGAGATAGAAACTGAATTGGCGCCAATAGCTGTCCAGTTGGCCTATGTTCAGCAGCTCCTTGGGCACAGACAAGAGGCCCTTGAGGCCTACACGCACATCATTAAATCAGATGTGGGAGATGAGTTATCACTTGCAGTGGCAGTCAACAACCTAATAGCTTTGAGAAGTCCAAAAGATGTTTCTGATGGCCTAAAGAAACTTGATCGATTAAAACAGAAGGACGACAAGCAAAGCTTCCACCTTACTGGTAAACTGGACTCGAAGCTTTCACCAAAACAAAAAGAATCAATATATGTGACTCGGGTCCTCTTACTTCTCCATGCAAATAAGATGGATCAGGCTCGAGAACTTGTTGCTGCACTTCCAGACATGTTTTCCGAGAGTGTGATGCCTGTTCTACTTCAGGCCGCACTTTTTGTAAGAGAAAACAAGGCTGGAAAAGCTGAAGAAGTTTTAGCCCAGTTTTCCGAGAAGTTCCCTGAAAAGTCCAAGGTTTTTCTCTTAGCAAGGGCACAGGTTGCTGCTGCTGCCAGCCACCCTCATATTGCCGCGGAGTCCCTTTCTAAGATACCTGATATCCAGCACATGCCTGCTACTGTTGCTACTCTTGTGTCTCTTAAAGAGCGTGCTGGTGACATTGATGGCGCTGCTGCTGTGCTTGACGCTGCAATAAACTGGTGGTCAAATTCCATGACCGAGGACAACAAGCTCAATGTTTTGATGCAAGAGGCTGCTTCCTTCAAGCTGAGGCATGGACGAGAAGAGGAAGCTTCTCGTCTATATGAGGAGCTTGTGAAAAGCCATGGAAGTGTGGAAGCATTGGTTGGGCTTGTAACTACAGTTGCTCGAGTGGATGTTAAGAAGGCAGAAGCTTATGAGCAGAAGCTGAAACCATTACCAGGTTTGAAGGGGATCAATGTGGATAATCTAGAGAAGACTTCTGGTGCCAAACATGAAGAGGGTATTTCTCAAGTTAAGGTTGCCGAGACATATGAGGGGAAGAGCAAGTCAAAGGCAAAGAAAAAGAGAAAGAGAAAGCCAAGATATCCTAAAGGGTTTGACCCTGCGAACCCCGGGCCGCCACCGGATCCAGAAAGGTGGCTTCCCAAGAGAGAAAGATCAAGTTATAGGCCTAAGAGAAAGGATAAGAGAGCAGCTGCTCAAGTACGAGGCTCTCAGGGTTCTGTAGCTAGAGACAAACATGAAGCTGGTGCCACTTCCAGCAATGCAAAATCAAACCAAGCAGCCACTTCAAAAGGAGCCTCACAGAATTCAGTTGCAGAGCCATCGAAGACTTCATCCAAGTCAAGAAAAAAGTCCAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005047 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005786 GO:0005829 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0012505 GO:0015031 GO:0015833 GO:0019904 GO:0030911 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042493 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP72 SRP_TPR_like

Protein Analysis

660

Amino Acids

72.59

Weight (kDa)

9.04

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP_TPR_like	PF17004	55 - 142	7.3e-09	Putative TPR-like repeat
SRP72	PF08492	549 - 596	2.5e-16	SRP72 RNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67650 AT1G67680
fragaria_vesca	FvH4_4g24580 FvH4_4g24580 FvH4_4g24580
malus_domestica	MD13G1110100.v1.1 MD16G1110000.v1.1
prunus_persica	Prupe.1G234800_v2.0.a1 Prupe.1G234800_v2.0.a1
pyrus_communis	pycom13g09580 pycom16g09350
rosa_chinensis	RchiOBHm_Chr4g0431561 RchiOBHm_Chr4g0431581
rosa_laevigata	RLG00000006906
rosa_multiflora	Rmu_sc0008423.1_g000002
rosa_roxburghii	Rroxscaffold_5G00373040
rosa_rugosa	Rorug04G0251000
rosa_samantha	Rh4AG307700 Rh4BG315300 Rh4CG330800 Rh4DG310200
rosa_wichuraiana	Rw4G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	673, 1598, 1865
AccII	CGCG	2 cut(s)	158, 1205
AciI	CCGC	7 cut(s)	41, 44, 107, 1062, 1203, 1205, 1733
AclWI	GGATC	5 cut(s)	63, 996, 1574, 1736, 1749
AcoI	YGGCCR	2 cut(s)	76, 616
AcsI	RAATTY	2 cut(s)	1339, 1924
AcuI	CTGAAG	3 cut(s)	504, 1040, 1119
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	3 cut(s)	489, 575, 1821
AfiI	CCNNNNNNNGG	1 cut(s)	1553
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	8 cut(s)	262, 416, 497, 541, 563, 1396, 1561, 1908
AjnI	CCWGG	3 cut(s)	142, 1552, 1973
AjuI	GAANNNNNNNTTGG	4 cut(s)	817, 849, 1461, 1493
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	5 cut(s)	141, 320, 1272, 1634, 1842
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	5 cut(s)	63, 996, 1574, 1736, 1749
AlwNI	CAGNNNCTG	2 cut(s)	595, 1540
Ama87I	CYCGRG	5 cut(s)	647, 954, 996, 1500, 1727
AoxI	GGCC	9 cut(s)	76, 616, 693, 729, 738, 841, 1059, 1730, 1784
ApaLI	GTGCAC	1 cut(s)	642
ApoI	RAATTY	2 cut(s)	1339, 1924
AspLEI	GCGC	3 cut(s)	211, 676, 1301
AspS9I	GGNCC	3 cut(s)	730, 958, 1730
AsuC2I	CCSGG	2 cut(s)	1728, 1729
AsuHPI	GGTGA	2 cut(s)	915, 1298
AsuNHI	GCTAGC	3 cut(s)	455, 532, 601
AvaI	CYCGRG	5 cut(s)	647, 954, 996, 1500, 1727
AvaII	GGWCC	1 cut(s)	958
BaeGI	GKGCMC	3 cut(s)	646, 720, 1168
BamHI	GGATCC	1 cut(s)	1741
BanI	GGYRCC	3 cut(s)	673, 1598, 1865
BbsI	GAAGAC	2 cut(s)	1595, 1952
Bbv12I	GWGCWC	1 cut(s)	646
BbvCI	CCTCAGC	1 cut(s)	1400
BccI	CCATC	5 cut(s)	632, 833, 979, 1289, 1948
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	1923, 1957
BciT130I	CCWGG	3 cut(s)	144, 1554, 1975
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	1728, 1729
BcoDI	GTCTC	5 cut(s)	141, 320, 1272, 1634, 1842
BfaI	CTAG	6 cut(s)	456, 533, 602, 1583, 1845, 1981
BfmI	CTRYAG	3 cut(s)	336, 1491, 1839
BfoI	RGCGCY	3 cut(s)	212, 677, 1302
BglI	GCCNNNNNGGC	1 cut(s)	737
BglII	AGATCT	1 cut(s)	360
Bme1390I	CCNGG	5 cut(s)	144, 1554, 1728, 1729, 1975
Bme18I	GGWCC	1 cut(s)	958
BmeT110I	CYCGRG	5 cut(s)	647, 954, 996, 1500, 1727
BmgT120I	GGNCC	3 cut(s)	730, 958, 1730
BmiI	GGNNCC	7 cut(s)	6, 675, 959, 1600, 1743, 1867, 1915
BmrFI	CCNGG	5 cut(s)	144, 1554, 1728, 1729, 1975
BmrI	ACTGGG	1 cut(s)	1108
BmsI	GCATC	4 cut(s)	376, 571, 1032, 1365
BmtI	GCTAGC	3 cut(s)	459, 536, 605
BmuI	ACTGGG	1 cut(s)	1108
BoxI	GACNNNNGTC	1 cut(s)	956
BpiI	GAAGAC	2 cut(s)	1595, 1952
BpmI	CTGGAG	2 cut(s)	113, 165
Bpu10I	CCTNAGC	1 cut(s)	1400
BpuEI	CTTGAG	3 cut(s)	755, 1608, 1800
BpuMI	CCSGG	2 cut(s)	1728, 1729
Bsa29I	ATCGAT	1 cut(s)	859
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	9 cut(s)	48, 648, 712, 1143, 1203, 1350, 1456, 1726, 1727
BsaWI	WCCGGW	1 cut(s)	1738
Bsc4I	CCNNNNNNNGG	1 cut(s)	1553
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	6 cut(s)	96, 688, 904, 912, 1114, 1334
Bse3DI	GCAATG	3 cut(s)	348, 626, 1885
BseBI	CCWGG	3 cut(s)	144, 1554, 1975
BseCI	ATCGAT	1 cut(s)	859
BseDI	CCNNGG	9 cut(s)	48, 648, 712, 1143, 1203, 1350, 1456, 1726, 1727
BseGI	GGATG	3 cut(s)	658, 1513, 1952
BseLI	CCNNNNNNNGG	1 cut(s)	1553
BseMI	GCAATG	3 cut(s)	348, 626, 1885
BseMII	CTCAG	3 cut(s)	517, 1391, 1844
BseNI	ACTGG	6 cut(s)	96, 688, 904, 912, 1114, 1334
BseRI	GAGGAG	2 cut(s)	27, 1454
BseSI	GKGCMC	3 cut(s)	646, 720, 1168
BseYI	CCCAGC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	2 cut(s)	158, 1205
BshFI	GGCC	9 cut(s)	78, 618, 695, 731, 740, 843, 1061, 1732, 1786
BshNI	GGYRCC	3 cut(s)	673, 1598, 1865
BshVI	ATCGAT	1 cut(s)	859
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	5 cut(s)	647, 954, 996, 1500, 1727
BsiSI	CCGG	3 cut(s)	615, 1728, 1739
BslFI	GGGAC	1 cut(s)	1195
BslI	CCNNNNNNNGG	1 cut(s)	1553
BsmAI	GTCTC	5 cut(s)	141, 320, 1272, 1634, 1842
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	1195
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	9 cut(s)	78, 618, 695, 731, 740, 843, 1061, 1732, 1786
BsoBI	CYCGRG	5 cut(s)	647, 954, 996, 1500, 1727
Bsp1286I	GDGCHC	3 cut(s)	646, 720, 1168
Bsp19I	CCATGG	2 cut(s)	48, 1456
BspACI	CCGC	7 cut(s)	41, 44, 107, 1062, 1203, 1205, 1733
BspANI	GGCC	9 cut(s)	78, 618, 695, 731, 740, 843, 1061, 1732, 1786
BspCNI	CTCAG	3 cut(s)	516, 1392, 1843
BspDI	ATCGAT	1 cut(s)	859
BspFNI	CGCG	2 cut(s)	158, 1205
BspLI	GGNNCC	7 cut(s)	6, 675, 959, 1600, 1743, 1867, 1915
BspMAI	CTGCAG	1 cut(s)	340
BspOI	GCTAGC	3 cut(s)	459, 536, 605
BspPI	GGATC	5 cut(s)	63, 996, 1574, 1736, 1749
BspQI	GCTCTTC	1 cut(s)	1649
BspT107I	GGYRCC	3 cut(s)	673, 1598, 1865
BsrDI	GCAATG	3 cut(s)	348, 626, 1885
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	6 cut(s)	96, 688, 904, 912, 1114, 1334
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	9 cut(s)	48, 648, 712, 1143, 1203, 1350, 1456, 1726, 1727
BssNI	GRCGYC	1 cut(s)	674
BssT1I	CCWWGG	4 cut(s)	48, 712, 1143, 1456
Bst2UI	CCWGG	3 cut(s)	144, 1554, 1975
Bst4CI	ACNGT	2 cut(s)	1252, 1495
Bst6I	CTCTTC	4 cut(s)	65, 1410, 1605, 1649
BstACI	GRCGYC	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstC8I	GCNNGC	6 cut(s)	457, 534, 603, 1186, 1245, 1281
BstDEI	CTNAG	6 cut(s)	503, 1156, 1218, 1400, 1788, 1830
BstDSI	CCRYGG	3 cut(s)	48, 1203, 1456
BstF5I	GGATG	3 cut(s)	658, 1513, 1952
BstFNI	CGCG	2 cut(s)	158, 1205
BstH2I	RGCGCY	3 cut(s)	212, 677, 1302
BstHHI	GCGC	3 cut(s)	211, 676, 1301
BstMAI	GTCTC	5 cut(s)	141, 320, 1272, 1634, 1842
BstNI	CCWGG	3 cut(s)	144, 1554, 1975
BstNSI	RCATGY	2 cut(s)	1027, 1243
BstPAI	GACNNNNGTC	1 cut(s)	956
BstSCI	CCNGG	5 cut(s)	142, 1552, 1726, 1727, 1973
BstSFI	CTRYAG	3 cut(s)	336, 1491, 1839
BstSLI	GKGCMC	3 cut(s)	646, 720, 1168
BstUI	CGCG	2 cut(s)	158, 1205
BstV2I	GAAGAC	2 cut(s)	1595, 1952
BstX2I	RGATCY	3 cut(s)	55, 360, 1741
BstXI	CCANNNNNNTGG	2 cut(s)	899, 1752
BstYI	RGATCY	3 cut(s)	55, 360, 1741
Bsu15I	ATCGAT	1 cut(s)	859
BsuRI	GGCC	9 cut(s)	78, 618, 695, 731, 740, 843, 1061, 1732, 1786
BsuTUI	ATCGAT	1 cut(s)	859
BtgI	CCRYGG	3 cut(s)	48, 1203, 1456
BtsCI	GGATG	3 cut(s)	658, 1513, 1952
BtsI	GCAGTG	2 cut(s)	543, 795
BtsIMutI	CAGTG	3 cut(s)	543, 576, 795
Cac8I	GCNNGC	6 cut(s)	457, 534, 603, 1186, 1245, 1281
CaiI	CAGNNNCTG	2 cut(s)	595, 1540
CfoI	GCGC	3 cut(s)	211, 676, 1301
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	3 cut(s)	730, 958, 1730
Cfr42I	CCGCGG	1 cut(s)	1206
Cfr9I	CCCGGG	1 cut(s)	1727
ClaI	ATCGAT	1 cut(s)	859
CseI	GACGC	2 cut(s)	164, 1325
CsiI	ACCWGGT	1 cut(s)	1552
Csp6I	GTAC	3 cut(s)	488, 574, 1820
CviQI	GTAC	3 cut(s)	488, 574, 1820
DdeI	CTNAG	6 cut(s)	503, 1156, 1218, 1400, 1788, 1830
DinI	GGCGCC	1 cut(s)	675
EaeI	YGGCCR	2 cut(s)	76, 616
Eam1104I	CTCTTC	4 cut(s)	65, 1410, 1605, 1649
EarI	CTCTTC	4 cut(s)	65, 1410, 1605, 1649
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	4 cut(s)	48, 712, 1143, 1456
Eco147I	AGGCCT	2 cut(s)	740, 1786
Eco32I	GATATC	2 cut(s)	1231, 1700
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	3 cut(s)	504, 1040, 1119
Eco88I	CYCGRG	5 cut(s)	647, 954, 996, 1500, 1727
EcoO109I	RGGNCCY	2 cut(s)	730, 958
EcoRI	GAATTC	1 cut(s)	1924
EcoRII	CCWGG	3 cut(s)	142, 1552, 1973
EcoRV	GATATC	2 cut(s)	1231, 1700
EcoT14I	CCWWGG	4 cut(s)	48, 712, 1143, 1456
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
ErhI	CCWWGG	4 cut(s)	48, 712, 1143, 1456
Esp3I	CGTCTC	1 cut(s)	141
FalI	AAGNNNNNCTT	8 cut(s)	195, 227, 509, 541, 717, 749, 872, 904
FaqI	GGGAC	1 cut(s)	1195
FauNDI	CATATG	1 cut(s)	1645
FbaI	TGATCA	1 cut(s)	183
FokI	GGATG	3 cut(s)	665, 1520, 1939
FspBI	CTAG	6 cut(s)	456, 533, 602, 1583, 1845, 1981
GlaI	GCGC	3 cut(s)	210, 675, 1300
GsaI	CCCAGC	1 cut(s)	474
GsuI	CTGGAG	2 cut(s)	113, 165
HaeII	RGCGCY	3 cut(s)	212, 677, 1302
HaeIII	GGCC	9 cut(s)	78, 618, 695, 731, 740, 843, 1061, 1732, 1786
HapII	CCGG	3 cut(s)	615, 1728, 1739
HgaI	GACGC	2 cut(s)	164, 1325
HhaI	GCGC	3 cut(s)	211, 676, 1301
Hin1I	GRCGYC	1 cut(s)	674
Hin6I	GCGC	3 cut(s)	209, 674, 1299
HinP1I	GCGC	3 cut(s)	209, 674, 1299
HincII	GTYRAC	2 cut(s)	430, 799
HindII	GTYRAC	2 cut(s)	430, 799
HindIII	AAGCTT	5 cut(s)	410, 886, 917, 1422, 1524
HinfI	GANTC	6 cut(s)	220, 235, 911, 938, 952, 1208
HpaII	CCGG	3 cut(s)	615, 1728, 1739
HphI	GGTGA	2 cut(s)	915, 1298
Hpy166II	GTNNAC	5 cut(s)	430, 576, 644, 799, 905
Hpy188I	TCNGA	6 cut(s)	408, 484, 763, 838, 1033, 1123
Hpy188III	TCNNGA	7 cut(s)	100, 245, 998, 1019, 1583, 1745, 1962
Hpy8I	GTNNAC	5 cut(s)	430, 576, 644, 799, 905
HpyAV	CCTTC	5 cut(s)	249, 865, 1402, 1510, 1555
HpyCH4III	ACNGT	2 cut(s)	1252, 1495
HpyF3I	CTNAG	6 cut(s)	503, 1156, 1218, 1400, 1788, 1830
Hsp92I	GRCGYC	1 cut(s)	674
HspAI	GCGC	3 cut(s)	209, 674, 1299
KasI	GGCGCC	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	1206
LguI	GCTCTTC	1 cut(s)	1649
LmnI	GCTCC	5 cut(s)	10, 145, 714, 1441, 1913
LweI	GCATC	4 cut(s)	376, 571, 1032, 1365
MabI	ACCWGGT	1 cut(s)	1552
MaeI	CTAG	6 cut(s)	456, 533, 602, 1583, 1845, 1981
MaeIII	GTNAC	3 cut(s)	949, 1286, 1486
MboII	GAAGA	9 cut(s)	52, 250, 647, 1112, 1427, 1600, 1622, 1666, 1957
MflI	RGATCY	3 cut(s)	55, 360, 1741
MhlI	GDGCHC	3 cut(s)	646, 720, 1168
MluCI	AATT	4 cut(s)	445, 668, 1339, 1924
Mly113I	GGCGCC	1 cut(s)	674
MlyI	GAGTC	3 cut(s)	905, 946, 1217
MseI	TTAA	7 cut(s)	162, 306, 756, 863, 1272, 1512, 1629
MslI	CAYNNNNRTG	1 cut(s)	1461
MspA1I	CMGCKG	2 cut(s)	1205, 1811
MspI	CCGG	3 cut(s)	615, 1728, 1739
MspR9I	CCNGG	5 cut(s)	144, 1554, 1728, 1729, 1975
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	3 cut(s)	144, 1554, 1975
MvnI	CGCG	2 cut(s)	158, 1205
NarI	GGCGCC	1 cut(s)	674
NciI	CCSGG	2 cut(s)	1728, 1729
NcoI	CCATGG	2 cut(s)	48, 1456
NdeI	CATATG	1 cut(s)	1645
NheI	GCTAGC	3 cut(s)	455, 532, 601
NlaIV	GGNNCC	7 cut(s)	6, 675, 959, 1600, 1743, 1867, 1915
NmeAIII	GCCGAG	1 cut(s)	1663
NmuCI	GTSAC	2 cut(s)	949, 1286
NspI	RCATGY	2 cut(s)	1027, 1243
PaeR7I	CTCGAG	2 cut(s)	996, 1500
PceI	AGGCCT	2 cut(s)	740, 1786
PciI	ACATGT	1 cut(s)	1023
PciSI	GCTCTTC	1 cut(s)	1649
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	220, 235, 938
PfoI	TCCNGGA	2 cut(s)	142, 1973
PleI	GAGTC	3 cut(s)	905, 946, 1216
PluTI	GGCGCC	1 cut(s)	677
PpsI	GAGTC	3 cut(s)	905, 946, 1216
PpuMI	RGGWCCY	1 cut(s)	958
PscI	ACATGT	1 cut(s)	1023
PshAI	GACNNNNGTC	1 cut(s)	956
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	3 cut(s)	142, 1552, 1973
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	3 cut(s)	142, 1552, 1973
PspN4I	GGNNCC	7 cut(s)	6, 675, 959, 1600, 1743, 1867, 1915
PspPI	GGNCC	3 cut(s)	730, 958, 1730
PspPPI	RGGWCCY	1 cut(s)	958
PspXI	VCTCGAGB	1 cut(s)	1500
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	2 cut(s)	595, 1540
PsuI	RGATCY	3 cut(s)	55, 360, 1741
PvuII	CAGCTG	1 cut(s)	1811
RsaI	GTAC	3 cut(s)	489, 575, 1821
RsaNI	GTAC	3 cut(s)	488, 574, 1820
RseI	CAYNNNNRTG	1 cut(s)	1461
SacII	CCGCGG	1 cut(s)	1206
SapI	GCTCTTC	1 cut(s)	1649
SaqAI	TTAA	7 cut(s)	162, 306, 756, 863, 1272, 1512, 1629
Sau96I	GGNCC	3 cut(s)	730, 958, 1730
SchI	GAGTC	3 cut(s)	905, 946, 1217
ScrFI	CCNGG	5 cut(s)	144, 1554, 1728, 1729, 1975
SduI	GDGCHC	3 cut(s)	646, 720, 1168
SexAI	ACCWGGT	1 cut(s)	1552
SfaNI	GCATC	4 cut(s)	376, 571, 1032, 1365
SfcI	CTRYAG	3 cut(s)	336, 1491, 1839
SfiI	GGCCNNNNNGGCC	1 cut(s)	737
SfoI	GGCGCC	1 cut(s)	675
Sfr274I	CTCGAG	2 cut(s)	996, 1500
Sfr303I	CCGCGG	1 cut(s)	1206
SgrBI	CCGCGG	1 cut(s)	1206
SinI	GGWCC	1 cut(s)	958
SlaI	CTCGAG	2 cut(s)	996, 1500
SmaI	CCCGGG	1 cut(s)	1729
SmiMI	CAYNNNNRTG	1 cut(s)	1461
SmlI	CTYRAG	5 cut(s)	734, 996, 1500, 1623, 1815
SmoI	CTYRAG	5 cut(s)	734, 996, 1500, 1623, 1815
Sse9I	AATT	4 cut(s)	445, 668, 1339, 1924
SseBI	AGGCCT	2 cut(s)	740, 1786
SsiI	CCGC	7 cut(s)	41, 44, 107, 1062, 1203, 1205, 1733
SspDI	GGCGCC	1 cut(s)	673
SspMI	CTAG	6 cut(s)	456, 533, 602, 1583, 1845, 1981
StuI	AGGCCT	2 cut(s)	740, 1786
StyD4I	CCNGG	5 cut(s)	142, 1552, 1726, 1727, 1973
StyI	CCWWGG	4 cut(s)	48, 712, 1143, 1456
TaaI	ACNGT	2 cut(s)	1252, 1495
TaqII	GACCGA	1 cut(s)	1364
TasI	AATT	4 cut(s)	445, 668, 1339, 1924
TatI	WGTACW	2 cut(s)	487, 573
TauI	GCSGC	4 cut(s)	46, 1064, 1205, 1735
TfiI	GAWTC	3 cut(s)	220, 235, 938
Tru1I	TTAA	7 cut(s)	162, 306, 756, 863, 1272, 1512, 1629
Tru9I	TTAA	7 cut(s)	162, 306, 756, 863, 1272, 1512, 1629
TscAI	CASTG	3 cut(s)	550, 583, 795
TseFI	GTSAC	2 cut(s)	949, 1286
Tsp45I	GTSAC	2 cut(s)	949, 1286
TspDTI	ATGAA	5 cut(s)	312, 636, 1623, 1872, 1941
TspGWI	ACGGA	1 cut(s)	205
TspMI	CCCGGG	1 cut(s)	1727
TspRI	CASTG	3 cut(s)	550, 583, 795
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	958
XapI	RAATTY	2 cut(s)	1339, 1924
XbaI	TCTAGA	1 cut(s)	1582
XceI	RCATGY	2 cut(s)	1027, 1243
XhoI	CTCGAG	2 cut(s)	996, 1500
XmaI	CCCGGG	1 cut(s)	1727
XspI	CTAG	6 cut(s)	456, 533, 602, 1583, 1845, 1981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.