Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014515

Physical Location & Seq

Genomic Coordinates Reverse (-)

42651852 .. 42652340

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0253700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGAAAAATGTAATTTTACATGAACCCTCATGTTTGGAGTTTCGCTTTACTGGGAAAGCATCAGTCGACTACGAGAATGAGGTTGAAGTTGAAAACCTTGTGTTTAATTGCATTAAAGAATTCCAGCTTGAGAAATCTCCTGAAGACAATTTGTTTGACAAGTTGGATGCCAAAAAATTGAATAGATATTTACAAAACTTGGGAAAACATTTTGCCCTCCATTTTACAACAAAGACATTCCGCACATTTCGAGCATCTGAAATGATGGATGATTTGTTGAACAAGGAAGAGTTGAAGGAGAAAACAGAAGAAGATAAGCATGCTGTTTACTGGAATGCAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Malectin_like Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.81

Weight (kDa)

5.59

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_I	PF01028	2 - 116	4.2e-27	Eukaryotic DNA topoisomerase I, catalytic core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67720
fragaria_vesca	FvH4_4g24900 FvH4_4g24900 FvH4_4g24900
malus_domestica	MD13G1108000.v1.1 MD16G1108100.v1.1
prunus_persica	Prupe.1G238400_v2.0.a1 Prupe.1G238400_v2.0.a1
pyrus_communis	pycom16g09210
rosa_chinensis	RchiOBHm_Chr4g0431961
rosa_laevigata	RLG00000006871
rosa_multiflora	Rmu_sc0004965.1_g000014
rosa_roxburghii	Rroxscaffold_5G00373400
rosa_rugosa	Rorug04G0253600 Rorug04G0253700
rosa_samantha	Rh4BG317900
rosa_wichuraiana	Rw4G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	89, 95, 184, 283, 298
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	71, 160, 266
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	58, 338
BseGI	GGATG	2 cut(s)	175, 277
BseNI	ACTGG	2 cut(s)	58, 338
BsmI	GAATGC	1 cut(s)	343
BspACI	CCGC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	58, 338
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	175, 277
BstNSI	RCATGY	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	175, 277
Cac8I	GCNNGC	1 cut(s)	324
CviAII	CATG	3 cut(s)	23, 33, 323
CviJI	RGCY	1 cut(s)	130
CviKI_1	RGCY	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	26, 36, 326
FaiI	YATR	3 cut(s)	24, 34, 324
FatI	CATG	3 cut(s)	22, 32, 322
FblI	GTMKAC	1 cut(s)	69
FokI	GGATG	2 cut(s)	182, 284
Hin1II	CATG	3 cut(s)	26, 36, 326
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	70, 331
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	70, 331
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	114, 341
Hsp92II	CATG	3 cut(s)	26, 36, 326
LpnPI	CCDG	4 cut(s)	39, 140, 156, 319
LweI	GCATC	3 cut(s)	71, 160, 266
MboII	GAAGA	4 cut(s)	158, 302, 323, 326
MluCI	AATT	5 cut(s)	15, 109, 122, 151, 179
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	40, 76, 230
MseI	TTAA	2 cut(s)	108, 117
Mva1269I	GAATGC	1 cut(s)	343
NlaIII	CATG	3 cut(s)	26, 36, 326
NspI	RCATGY	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	108, 117
SetI	ASST	3 cut(s)	87, 102, 132
SfaNI	GCATC	3 cut(s)	71, 160, 266
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	5 cut(s)	15, 109, 122, 151, 179
SsiI	CCGC	1 cut(s)	244
TaqI	TCGA	2 cut(s)	69, 253
TasI	AATT	5 cut(s)	15, 109, 122, 151, 179
Tru1I	TTAA	2 cut(s)	108, 117
Tru9I	TTAA	2 cut(s)	108, 117
TspDTI	ATGAA	1 cut(s)	39
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.