Rorug04G0253600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
42639999 .. 42647294
7296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0253600.1

Sequence Viewer

Length: 1473 bp
ATGTTTGCTACCAACATGGATTCGGCACGGGATGTAAGTGGAGCTCAGAGCACAGTGTTGATCCCAATGCGCTTTGTGTGGCCTTATGGTGGCAGAAGTGTGTTTCTCAGTGGTTCCTTTGCACGGTGGTCCGAGCTTGTTCCTATGACGCCTGTTGAGGGTTGCCCGACTGTGTTTCAGGCTATTTATAGCGTTACGCCTGGTATCCACCAGTACAAATTCTTTGTTGATGGGGAATGGCGACACGATGAGCACCAACCCTATGCAAATGGTGAATATGGGTTAGTTAACACCATGGTCTTGGCTACAGACCCTAATTTCTTTCAACCAAATGTAGCTCCAGAGATAACTCCTGGAACTCACATGGAAGAGGACACTGAAGCCTTTCGGCGTTTGGTCCAGATTACAGATGGCACAGCTGATGCTGTACCAAGGATGTCAGAGGCTGATCTGCAGGGCTCCCGTCATCGTATTTCTGTCTTCTTGTCTACGCACACCACTTATGAACTACTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATTTACCTGTAAAGCAAGCATTTCACATATTGCATGAGCAGGGGATCCCTATGGCACCACTTTGGGACTTCAGCAGGGGACAATTTGTTGGAGTTCTTAGTGCATTGGATTTTATTTTAATATTAAGAGAGCTTGGGAATCATGGGTCTAATCTGACAGAGGAAGAGCTTGAAACACATACTATAGCTGCTTGGAAAGAAGGAAAAGCATATCTGAATGGACAAATTGATGGTCATGGGAGAGCATTGCCAAGACGTCTCGTCCATGCCGGGCCATATGATAATTTAAAAGATGTTGCTTTGAAATTTTTGCAAAATGATGTGGCTACCGTTCCAATTATCCATTCATCTTCAGAAGATGGCTCATTTCCACAGCTATTACACCTTGCTTCGCTGTCTGGTATTTTAAAATGTATTTGCAGATATTTTAGGCATTGTTCTAGCTCATTGCCCATTCTCCAAGCACCAATACGTGCACTTCCTGTGGGTACTTGGGTTCCAGAAATTGGAGAGCCAAATCGTCGGCCATTAGCAATGTTGAGGCCAAGTGCTTCACTTAGTGCAGCTTTAAACCTATTAGTTCAAGCTCAAGTAAGTTCGATACCTGTAGTTGATGATAATGACTCTTTGCTGGATATATATTGTCGGAGTGACATTACAGCTCTGGCTAAAGATAGAGCATATGCACATATTAATCTCAATGAAATGACCATTCAGCAGGCATTGCAGTTGGGACAAGACTCGTACTCTCCTTTTGAGCAGAGAAGTCAAAGATGTCAGATGTGTTTACGCTCTGATTCGCTTCATAAAGTGATGGAGAGATTAGCCAATCCAGGTGTCAGACGACTTGTCATTGTTGAAGCTGGCAGTAAGCGGGTTGAAGGCATTGTTTCACTAAGTGACGTTTTCAAGTTCTTGCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

490

Amino Acids

54.37

Weight (kDa)

5.79

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 21 - 102 4.1e-23 Glycogen recognition site of AMP-activated protein kinase
CBS PF00571 356 - 403 2.5e-06 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 601
AccB7I CCANNNNNTGG 1 cut(s) 1052
AccI GTMKAC 1 cut(s) 488
AciI CCGC 1 cut(s) 1420
AclWI GGATC 3 cut(s) 55, 586, 599
AcoI YGGCCR 1 cut(s) 1070
AcsI RAATTY 2 cut(s) 218, 851
AcuI CTGAAG 3 cut(s) 399, 601, 882
AcyI GRCGYC 2 cut(s) 149, 802
AdeI CACNNNGTG 2 cut(s) 1106, 1445
AfaI GTAC 4 cut(s) 215, 429, 1036, 1292
AfiI CCNNNNNNNGG 5 cut(s) 89, 123, 158, 521, 1052
AgsI TTSAA 7 cut(s) 326, 719, 850, 1130, 1406, 1427, 1456
AhdI GACNNNNNGTC 2 cut(s) 806, 1394
AjnI CCWGG 3 cut(s) 199, 352, 1378
AjuI GAANNNNNNNTTGG 2 cut(s) 874, 906
Alw21I GWGCWC 4 cut(s) 46, 53, 255, 1024
Alw26I GTCTC 1 cut(s) 809
Alw44I GTGCAC 1 cut(s) 1020
AlwI GGATC 3 cut(s) 55, 586, 599
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 4 cut(s) 80, 818, 1070, 1088
ApaLI GTGCAC 1 cut(s) 1020
ApeKI GCWGC 2 cut(s) 734, 1109
ApoI RAATTY 2 cut(s) 218, 851
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
AseI ATTAAT 1 cut(s) 1239
Asp700I GAANNNNTTC 2 cut(s) 384, 510
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 129, 397, 818
AsuC2I CCSGG 1 cut(s) 817
AsuHPI GGTGA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 2 cut(s) 129, 397
BaeGI GKGCMC 1 cut(s) 1024
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BamHI GGATCC 1 cut(s) 591
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 2 cut(s) 46, 461
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 4 cut(s) 46, 53, 255, 1024
BbvI GCAGC 2 cut(s) 721, 1121
BccI CCATC 5 cut(s) 224, 404, 770, 899, 1354
BciT130I CCWGG 3 cut(s) 201, 354, 1380
BciVI GTATCC 1 cut(s) 215
BcnI CCSGG 1 cut(s) 817
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 1 cut(s) 987
BfmI CTRYAG 4 cut(s) 306, 452, 729, 1152
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 2 cut(s) 735, 1110
BlsI GCNGC 2 cut(s) 736, 1111
Bme1390I CCNGG 4 cut(s) 201, 354, 817, 1380
Bme18I GGWCC 2 cut(s) 129, 397
BmeRI GACNNNNNGTC 2 cut(s) 806, 1394
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 3 cut(s) 129, 397, 818
BmiI GGNNCC 5 cut(s) 115, 460, 593, 603, 1044
BmrFI CCNGG 4 cut(s) 201, 354, 817, 1380
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 1119
BpuMI CCSGG 1 cut(s) 817
BsaAI YACGTR 1 cut(s) 1019
BsaHI GRCGYC 2 cut(s) 149, 802
BsaJI CCNNGG 3 cut(s) 294, 431, 537
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 123, 158, 521, 1052
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 4 cut(s) 791, 992, 1086, 1268
BseBI CCWGG 3 cut(s) 201, 354, 1380
BseDI CCNNGG 3 cut(s) 294, 431, 537
BseGI GGATG 3 cut(s) 37, 441, 547
BseLI CCNNNNNNNGG 5 cut(s) 89, 123, 158, 521, 1052
BseMI GCAATG 4 cut(s) 791, 992, 1086, 1268
BseMII CTCAG 2 cut(s) 59, 121
BseNI ACTGG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 2 cut(s) 721, 1121
BsgI GTGCAG 1 cut(s) 1128
BshFI GGCC 4 cut(s) 82, 820, 1072, 1090
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 4 cut(s) 46, 53, 255, 1024
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 1 cut(s) 816
BslFI GGGAC 3 cut(s) 626, 639, 1293
BslI CCNNNNNNNGG 5 cut(s) 89, 123, 158, 521, 1052
BsmAI GTCTC 1 cut(s) 809
BsmBI CGTCTC 1 cut(s) 809
BsmFI GGGAC 3 cut(s) 626, 639, 1293
BsnI GGCC 4 cut(s) 82, 820, 1072, 1090
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 5 cut(s) 46, 53, 255, 461, 1024
Bsp143I GATC 3 cut(s) 60, 448, 591
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 1 cut(s) 1420
BspANI GGCC 4 cut(s) 82, 820, 1072, 1090
BspCNI CTCAG 2 cut(s) 58, 120
BspLI GGNNCC 5 cut(s) 115, 460, 593, 603, 1044
BspMAI CTGCAG 1 cut(s) 456
BspPI GGATC 3 cut(s) 55, 586, 599
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 601
BsrDI GCAATG 4 cut(s) 791, 992, 1086, 1268
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 294, 431, 537
BssMI GATC 3 cut(s) 60, 448, 591
BssNI GRCGYC 2 cut(s) 149, 802
BssT1I CCWWGG 3 cut(s) 294, 431, 537
Bst2UI CCWGG 3 cut(s) 201, 354, 1380
Bst4CI ACNGT 4 cut(s) 55, 126, 172, 877
Bst6I CTCTTC 2 cut(s) 363, 705
BstACI GRCGYC 2 cut(s) 149, 802
BstAPI GCANNNNNTGC 1 cut(s) 1270
BstBAI YACGTR 1 cut(s) 1019
BstC8I GCNNGC 3 cut(s) 564, 1266, 1411
BstDEI CTNAG 5 cut(s) 45, 107, 644, 1103, 1442
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 37, 441, 547
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 63, 451, 594
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 3 cut(s) 60, 448, 591
BstMWI GCNNNNNNNGC 1 cut(s) 1270
BstNI CCWGG 3 cut(s) 201, 354, 1380
BstSCI CCNGG 4 cut(s) 199, 352, 815, 1378
BstSFI CTRYAG 4 cut(s) 306, 452, 729, 1152
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 2 cut(s) 721, 1121
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 591
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 591
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 4 cut(s) 82, 820, 1072, 1090
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 37, 441, 547
BtsIMutI CAGTG 3 cut(s) 60, 115, 375
Cac8I GCNNGC 3 cut(s) 564, 1266, 1411
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 129, 397, 818
CseI GACGC 1 cut(s) 157
Csp6I GTAC 4 cut(s) 214, 428, 1035, 1291
CviAII CATG 7 cut(s) 16, 295, 364, 581, 689, 782, 812
CviQI GTAC 4 cut(s) 214, 428, 1035, 1291
DdeI CTNAG 5 cut(s) 45, 107, 644, 1103, 1442
DpnI GATC 3 cut(s) 62, 450, 593
DpnII GATC 3 cut(s) 60, 448, 591
DraI TTTAAA 3 cut(s) 834, 954, 1116
DraIII CACNNNGTG 2 cut(s) 1106, 1445
DriI GACNNNNNGTC 2 cut(s) 806, 1394
EaeI YGGCCR 1 cut(s) 1070
Eam1104I CTCTTC 2 cut(s) 363, 705
Eam1105I GACNNNNNGTC 2 cut(s) 806, 1394
EarI CTCTTC 2 cut(s) 363, 705
Ecl136II GAGCTC 1 cut(s) 44
Eco130I CCWWGG 3 cut(s) 294, 431, 537
Eco24I GRGCYC 2 cut(s) 46, 461
Eco47I GGWCC 2 cut(s) 129, 397
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 3 cut(s) 399, 601, 882
Eco88I CYCGRG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 44
EcoRII CCWGG 3 cut(s) 199, 352, 1378
EcoT14I CCWWGG 3 cut(s) 294, 431, 537
EcoT38I GRGCYC 2 cut(s) 46, 461
ErhI CCWWGG 3 cut(s) 294, 431, 537
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 7 cut(s) 19, 298, 367, 584, 692, 785, 815
FaqI GGGAC 3 cut(s) 626, 639, 1293
FatI CATG 7 cut(s) 15, 294, 363, 580, 688, 781, 811
FauI CCCGC 1 cut(s) 1413
FauNDI CATATG 2 cut(s) 823, 1228
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 2 cut(s) 735, 1110
FokI GGATG 3 cut(s) 44, 448, 554
FriOI GRGCYC 2 cut(s) 46, 461
Fsp4HI GCNGC 2 cut(s) 735, 1110
FspBI CTAG 1 cut(s) 987
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 735, 1110
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 4 cut(s) 82, 820, 1072, 1090
HapII CCGG 1 cut(s) 816
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 2 cut(s) 149, 802
Hin1II CATG 7 cut(s) 19, 298, 367, 584, 692, 785, 815
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 6 cut(s) 20, 518, 685, 1169, 1286, 1343
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 1 cut(s) 816
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 289, 489, 1022, 1334
Hpy188III TCNNGA 4 cut(s) 341, 400, 515, 1046
Hpy8I GTNNAC 4 cut(s) 289, 489, 1022, 1334
Hpy99I CGWCG 1 cut(s) 1071
HpyAV CCTTC 2 cut(s) 740, 1421
HpyCH4III ACNGT 4 cut(s) 55, 126, 172, 877
HpyCH4IV ACGT 3 cut(s) 802, 1018, 1449
HpyF10VI GCNNNNNNNGC 1 cut(s) 1270
HpyF3I CTNAG 5 cut(s) 45, 107, 644, 1103, 1442
HpySE526I ACGT 3 cut(s) 802, 1018, 1449
Hsp92I GRCGYC 2 cut(s) 149, 802
Hsp92II CATG 7 cut(s) 19, 298, 367, 584, 692, 785, 815
HspAI GCGC 1 cut(s) 70
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 3 cut(s) 60, 448, 591
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 3 cut(s) 41, 343, 464
Lsp1109I GCAGC 2 cut(s) 721, 1121
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 987
MaeII ACGT 3 cut(s) 802, 1018, 1449
MaeIII GTNAC 3 cut(s) 193, 1196, 1445
MalI GATC 3 cut(s) 62, 450, 593
MboI GATC 3 cut(s) 60, 448, 591
MboII GAAGA 5 cut(s) 380, 472, 722, 888, 914
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 5 cut(s) 46, 53, 255, 461, 1024
MluCI AATT 8 cut(s) 218, 316, 629, 771, 829, 851, 882, 1050
MlyI GAGTC 3 cut(s) 527, 1163, 1280
MmeI TCCRAC 2 cut(s) 616, 1172
MnlI CCTC 5 cut(s) 151, 364, 436, 700, 1080
MroXI GAANNNNTTC 2 cut(s) 384, 510
MseI TTAA 7 cut(s) 288, 665, 671, 833, 953, 1115, 1239
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 816
MspR9I CCNGG 4 cut(s) 201, 354, 817, 1380
MvaI CCWGG 3 cut(s) 201, 354, 1380
MwoI GCNNNNNNNGC 1 cut(s) 1270
NciI CCSGG 1 cut(s) 817
NcoI CCATGG 1 cut(s) 294
NdeI CATATG 2 cut(s) 823, 1228
NdeII GATC 3 cut(s) 60, 448, 591
NlaIII CATG 7 cut(s) 19, 298, 367, 584, 692, 785, 815
NlaIV GGNNCC 5 cut(s) 115, 460, 593, 603, 1044
NmuCI GTSAC 2 cut(s) 1196, 1445
PciSI GCTCTTC 1 cut(s) 705
PdmI GAANNNNTTC 2 cut(s) 384, 510
PfeI GAWTC 3 cut(s) 20, 685, 1343
PflMI CCANNNNNTGG 1 cut(s) 1052
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 2 cut(s) 736, 1111
PleI GAGTC 3 cut(s) 526, 1163, 1280
PpsI GAGTC 3 cut(s) 526, 1163, 1280
Ppu21I YACGTR 1 cut(s) 1019
PshBI ATTAAT 1 cut(s) 1239
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 199, 352, 1378
PspGI CCWGG 3 cut(s) 199, 352, 1378
PspN4I GGNNCC 5 cut(s) 115, 460, 593, 603, 1044
PspPI GGNCC 3 cut(s) 129, 397, 818
PstI CTGCAG 1 cut(s) 456
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 591
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 4 cut(s) 215, 429, 1036, 1292
RsaNI GTAC 4 cut(s) 214, 428, 1035, 1291
SacI GAGCTC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 7 cut(s) 288, 665, 671, 833, 953, 1115, 1239
SatI GCNGC 2 cut(s) 735, 1110
Sau3AI GATC 3 cut(s) 60, 448, 591
Sau96I GGNCC 3 cut(s) 129, 397, 818
SchI GAGTC 3 cut(s) 527, 1163, 1280
ScrFI CCNGG 4 cut(s) 201, 354, 817, 1380
SduI GDGCHC 5 cut(s) 46, 53, 255, 461, 1024
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 4 cut(s) 306, 452, 729, 1152
SinI GGWCC 2 cut(s) 129, 397
SmlI CTYRAG 1 cut(s) 1134
SmoI CTYRAG 1 cut(s) 1134
Sse9I AATT 8 cut(s) 218, 316, 629, 771, 829, 851, 882, 1050
SsiI CCGC 1 cut(s) 1420
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 987
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 4 cut(s) 199, 352, 815, 1378
StyI CCWWGG 3 cut(s) 294, 431, 537
TaaI ACNGT 4 cut(s) 55, 126, 172, 877
TaiI ACGT 3 cut(s) 805, 1021, 1452
TaqI TCGA 1 cut(s) 1145
TasI AATT 8 cut(s) 218, 316, 629, 771, 829, 851, 882, 1050
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 3 cut(s) 20, 685, 1343
Tru1I TTAA 7 cut(s) 288, 665, 671, 833, 953, 1115, 1239
Tru9I TTAA 7 cut(s) 288, 665, 671, 833, 953, 1115, 1239
TscAI CASTG 3 cut(s) 60, 115, 382
TseFI GTSAC 2 cut(s) 1196, 1445
TseI GCWGC 2 cut(s) 734, 1109
Tsp45I GTSAC 2 cut(s) 1196, 1445
TspDTI ATGAA 4 cut(s) 519, 882, 1263, 1340
TspRI CASTG 3 cut(s) 60, 115, 382
Van91I CCANNNNNTGG 1 cut(s) 1052
VneI GTGCAC 1 cut(s) 1020
VpaK11BI GGWCC 2 cut(s) 129, 397
VspI ATTAAT 1 cut(s) 1239
XapI RAATTY 2 cut(s) 218, 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 488
XmnI GAANNNNTTC 2 cut(s) 384, 510
XspI CTAG 1 cut(s) 987
ZraI GACGTC 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.