Rorug04G0253500

Prokaryotic RING finger family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009682
Physical Location & Seq
Forward (+)
42637654 .. 42639703
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0253500.1

Sequence Viewer

Length: 1956 bp
ATGGCTCTCCAATCTGCTCTGCCATTTGAAATGTACAACCAATTCGCCGATCAATCCTCCAATTCCAATAAGGCCACAAAGAGGGACTTCAGCAATGTTCACGGTTCCGATGATGGCGATGGCGGCGCAATCTTGGTCCATGCAATGAAAAGAATCAAGCTCTCATCAGATAATGGTGACTCGTCTCAGATGAAGACGAAGGAGAAGGAAATTGGGTACGAAGACGTAGGTGGTGTGAGGAAGCAGATGGCTCAGATTCGTGAGTTAGTGGAGCTTCCATTGAAGCAACCCAAGTTGTTTAAGTTCATTGGAGTGAAGCCTCCAAAGGGTATTCTTCTATACGGGCCCCCTGGCTCGGGCAAGACTCTGATTGCCCGAGCCATCGCGAACGAGACGGGGGCCTTGTTTTTGTGCATTAACGGGCCGGAGATCATGTCGAAAATGGCTGGGGAGAGTGAGAGCAATCTAAGGAAGGTTTTCGAGGAAGCGGAGAAGAACGCACCGTGTATTGTGTTTATAGATGAGATTGACTCGATTGCTCCGAAGAGAGAGAAGAGTAATGGGGAAGTTGAGAGGAGGATTGTTTCACAGCTCTTGACACTCATGGACCGTATGAAGTCGAAAGGGCGTGTGGTTGTTATTGGGGCGACCAATCGGCCTAATAGTATTGACACGGCTCTTAGGAGGTGTGGAAGATTTGATAGGGAGATAGATATTGGTGTTCCAGATGAGGCCGGGCGGCTTGAGGTGCTTCGAATCCATACCAAGAACATGAAGCTTGGTGAGGATGTGGAGTTGGAGAAGATAGCTAAGGAGACACATGGGTATGTTGGGGCAGATTTAGCTGCATTGTGCACTGAGGCTGCGCTTCAATGCATAAGAGAGAATATGGATGAGATTGACTGGGAAGATCAGCAGACATTAGATGCTGCGATGCTTGGCTCTATGAAAGTTGGAAATGAGCACTTTCGGATTGCTTTGCGAGCAAGCAACCCTTCTGCTCTTCGCGAAACGGCTGTGGAGGTGCCGAATGTGACTTGGGATGCTATCGGGGGTCTGGAGAAAGTGAAGAGGGAACTTCAGGAGACTGTTCAGTATCCAGTTGAGCATCCTGAGAAGTTTGAGAAATATGGGATGTCACCCTCAAAGGGGGTTCTTTTCTATGGCCCTCCTGGGTGTGGTAAGACCCTTTTGGCCAAGGCTATTGCCAATGAGTGTCAGGCAAATTTTATTAGTATCAAGGGGCCTGAGTTGCTTACTAGTGGGTTTGGAGAGAGTGAGGCGAATGTGAGGGAAATTTTCGACAAGGCTAGAGGGTCTGCTCCCTGTGTCCTCTTGTTTGATGAACTCGATTCCATTGCTACTCAGAGAAGTAGTAATGCTGGAGGTGGTGGTGCTGCTGATAGGGTTTTGAACCAACTCCTTACAGAAATGGATGGATTGTCTGCTAAGAAAACTGTCTTTGTTATTGGGGCCACCAATAGACCTGACATTATAGACCCTGCACTTCTCCGTCCAGGACGTCTGGATCAATTGATTTACATCCCTCTCCCTGATGAGGAATCCCGCTGTGAAATATTCAAGGCTTGCTTGAGGAAGTCTCCAGTTTCCAAAGATGTGAACATCAGAGCACTTGCAAAGAGCACTCGAGGATTTAGTGGTGCTGATATCACAGAAATATGCCAGCGTGCTTGCAAATATGCCATTAGAGAGAACATTGGGAATGATATCAAGAGGGAGATGAGCAGAAGTGAGAATTGTGAAGATATGGAGGAGGATGAAGTGGCAGAGATCAGGGCCGATCACTTTGTGGAGTCAATGAAGTATGCTCGTAGAAGTGTTAGTGATTCCGATATCCGCAAATACAAGGCATATGCTCAGGCATTGCAGCAGTCTAGAGGGTTTGGAACAGACCAGTTCAAAATTGCAGGGAGCGGTTCTCATGCTGCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000151 GO:0000209 GO:0000726 GO:0000781 GO:0001775 GO:0002200 GO:0002204 GO:0002208 GO:0002250 GO:0002252 GO:0002263 GO:0002285 GO:0002312 GO:0002366 GO:0002376 GO:0002377 GO:0002381 GO:0002440 GO:0002443 GO:0002449 GO:0002460 GO:0002520 GO:0002562 GO:0003006 GO:0003674 GO:0003682 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006955 GO:0006974 GO:0006996 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016043 GO:0016064 GO:0016444 GO:0016445 GO:0016447 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019724 GO:0019787 GO:0019941 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032785 GO:0032991 GO:0033522 GO:0033523 GO:0033554 GO:0034243 GO:0034244 GO:0034641 GO:0034728 GO:0035861 GO:0036211 GO:0042113 GO:0042393 GO:0042802 GO:0042803 GO:0043044 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043486 GO:0043632 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0045190 GO:0045321 GO:0045739 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0046649 GO:0046872 GO:0046914 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051276 GO:0051603 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070534 GO:0070535 GO:0070647 GO:0070936 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0098687 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001020 GO:2001022 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

651

Amino Acids

71.6

Weight (kDa)

5.88

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvB_N PF05496 110 - 184 4e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA PF00004 111 - 240 1.5e-48 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 263 - 305 1.3e-17 AAA+ lid domain
AAA PF00004 385 - 517 1.3e-45 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 539 - 575 1.4e-11 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1525
AccB1I GGYRCC 1 cut(s) 1024
AccBSI CCGCTC 1 cut(s) 1935
AccII CGCG 2 cut(s) 386, 1008
AciI CCGC 6 cut(s) 123, 488, 739, 1567, 1858, 1935
AclWI GGATC 1 cut(s) 1536
AcoI YGGCCR 1 cut(s) 1194
AcsI RAATTY 2 cut(s) 1225, 1296
AcuI CTGAAG 2 cut(s) 73, 1064
AcyI GRCGYC 1 cut(s) 1522
AdeI CACNNNGTG 1 cut(s) 1810
AfaI GTAC 2 cut(s) 35, 218
AfiI CCNNNNNNNGG 8 cut(s) 81, 326, 355, 356, 1148, 1149, 1178, 1558
AgsI TTSAA 6 cut(s) 29, 283, 872, 1414, 1582, 1921
AhlI ACTAGT 1 cut(s) 1259
AjnI CCWGG 3 cut(s) 349, 1171, 1516
AluBI AGCT 6 cut(s) 160, 274, 592, 778, 809, 845
AluI AGCT 6 cut(s) 160, 274, 592, 778, 809, 845
Alw21I GWGCWC 4 cut(s) 857, 966, 1633, 1646
Alw26I GTCTC 5 cut(s) 189, 386, 809, 1079, 1605
Alw44I GTGCAC 1 cut(s) 853
AlwI GGATC 1 cut(s) 1536
Ama87I CYCGRG 3 cut(s) 355, 375, 1647
ApaI GGGCCC 1 cut(s) 348
ApaLI GTGCAC 1 cut(s) 853
ApeKI GCWGC 6 cut(s) 845, 863, 929, 1397, 1888, 1946
ApoI RAATTY 2 cut(s) 1225, 1296
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 2 cut(s) 128, 868
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 3 cut(s) 188, 794, 1131
AsuII TTCGAA 1 cut(s) 754
AvaI CYCGRG 3 cut(s) 355, 375, 1647
AvaII GGWCC 2 cut(s) 136, 607
BaeGI GKGCMC 2 cut(s) 348, 857
BalI TGGCCA 1 cut(s) 1196
BanI GGYRCC 1 cut(s) 1024
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 200, 228
Bbv12I GWGCWC 4 cut(s) 857, 966, 1633, 1646
BbvI GCAGC 6 cut(s) 832, 850, 916, 1384, 1900, 1933
BccI CCATC 5 cut(s) 107, 113, 241, 389, 1430
BceAI ACGGC 2 cut(s) 690, 1029
BcgI CGANNNNNNTGC 2 cut(s) 1340, 1374
BciT130I CCWGG 3 cut(s) 351, 1173, 1518
BciVI GTATCC 1 cut(s) 1107
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 5 cut(s) 189, 386, 809, 1079, 1605
BcuI ACTAGT 1 cut(s) 1259
BfaI CTAG 3 cut(s) 1260, 1311, 1896
BfuI GTATCC 1 cut(s) 1107
BisI GCNGC 8 cut(s) 124, 740, 846, 864, 930, 1398, 1889, 1947
BlsI GCNGC 8 cut(s) 125, 741, 847, 865, 931, 1399, 1890, 1948
Bme1390I CCNGG 4 cut(s) 351, 736, 1173, 1518
Bme18I GGWCC 2 cut(s) 136, 607
BmeT110I CYCGRG 3 cut(s) 355, 375, 1647
BmiI GGNNCC 7 cut(s) 106, 346, 347, 400, 1026, 1245, 1474
BmrFI CCNGG 4 cut(s) 351, 736, 1173, 1518
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 4 cut(s) 916, 924, 1033, 1117
BmuI ACTGGG 1 cut(s) 913
BpiI GAAGAC 2 cut(s) 200, 228
BplI GAGNNNNNCTC 6 cut(s) 515, 547, 1585, 1617, 1924, 1956
BpmI CTGGAG 3 cut(s) 1079, 1404, 1587
Bpu10I CCTNAGC 2 cut(s) 810, 1878
Bpu14I TTCGAA 1 cut(s) 754
BpuEI CTTGAG 2 cut(s) 764, 1612
BpuMI CCSGG 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 1541
BsaHI GRCGYC 1 cut(s) 1522
BsaJI CCNNGG 3 cut(s) 349, 1172, 1197
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 8 cut(s) 81, 326, 355, 356, 1148, 1149, 1178, 1558
Bse1I ACTGG 4 cut(s) 908, 1100, 1604, 1915
Bse3DI GCAATG 4 cut(s) 100, 150, 1356, 1883
Bse8I GATNNNNATC 1 cut(s) 1541
BseBI CCWGG 3 cut(s) 351, 1173, 1518
BseDI CCNNGG 3 cut(s) 349, 1172, 1197
BseGI GGATG 8 cut(s) 793, 898, 1048, 1108, 1140, 1441, 1542, 1783
BseJI GATNNNNATC 1 cut(s) 1541
BseLI CCNNNNNNNGG 8 cut(s) 81, 326, 355, 356, 1148, 1149, 1178, 1558
BseMI GCAATG 4 cut(s) 100, 150, 1356, 1883
BseMII CTCAG 7 cut(s) 200, 266, 849, 1104, 1239, 1379, 1892
BseNI ACTGG 4 cut(s) 908, 1100, 1604, 1915
BseRI GAGGAG 2 cut(s) 589, 1787
BseSI GKGCMC 2 cut(s) 348, 857
BseXI GCAGC 6 cut(s) 832, 850, 916, 1384, 1900, 1933
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 1488
Bsh1236I CGCG 2 cut(s) 386, 1008
BshNI GGYRCC 1 cut(s) 1024
BsiHKAI GWGCWC 4 cut(s) 857, 966, 1633, 1646
BsiHKCI CYCGRG 3 cut(s) 355, 375, 1647
BsiSI CCGG 2 cut(s) 425, 735
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 8 cut(s) 81, 326, 355, 356, 1148, 1149, 1178, 1558
BsmAI GTCTC 5 cut(s) 189, 386, 809, 1079, 1605
BsmBI CGTCTC 2 cut(s) 189, 386
BsmFI GGGAC 1 cut(s) 98
BsoBI CYCGRG 3 cut(s) 355, 375, 1647
Bsp119I TTCGAA 1 cut(s) 754
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 5 cut(s) 348, 857, 966, 1633, 1646
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
Bsp68I TCGCGA 2 cut(s) 386, 1008
BspACI CCGC 6 cut(s) 123, 488, 739, 1567, 1858, 1935
BspCNI CTCAG 7 cut(s) 199, 265, 850, 1105, 1240, 1378, 1891
BspFNI CGCG 2 cut(s) 386, 1008
BspLI GGNNCC 7 cut(s) 106, 346, 347, 400, 1026, 1245, 1474
BspPI GGATC 1 cut(s) 1536
BspQI GCTCTTC 1 cut(s) 1008
BspT104I TTCGAA 1 cut(s) 754
BspT107I GGYRCC 1 cut(s) 1024
BsrBI CCGCTC 1 cut(s) 1935
BsrDI GCAATG 4 cut(s) 100, 150, 1356, 1883
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 4 cut(s) 908, 1100, 1604, 1915
BssECI CCNNGG 3 cut(s) 349, 1172, 1197
BssMI GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
BssNI GRCGYC 1 cut(s) 1522
BssT1I CCWWGG 1 cut(s) 1197
Bst2UI CCWGG 3 cut(s) 351, 1173, 1518
Bst4CI ACNGT 5 cut(s) 104, 504, 611, 1090, 1459
Bst6I CTCTTC 4 cut(s) 539, 548, 1008, 1064
BstACI GRCGYC 1 cut(s) 1522
BstAUI TGTACA 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 754
BstC8I GCNNGC 6 cut(s) 984, 988, 1588, 1685, 1689, 1693
BstF5I GGATG 8 cut(s) 793, 898, 1048, 1108, 1140, 1441, 1542, 1783
BstFNI CGCG 2 cut(s) 386, 1008
BstHHI GCGC 2 cut(s) 128, 868
BstKTI GATC 6 cut(s) 52, 432, 913, 1531, 1794, 1804
BstMAI GTCTC 5 cut(s) 189, 386, 809, 1079, 1605
BstMBI GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
BstMWI GCNNNNNNNGC 5 cut(s) 123, 748, 842, 983, 1252
BstNI CCWGG 3 cut(s) 351, 1173, 1518
BstSCI CCNGG 4 cut(s) 349, 734, 1171, 1516
BstSLI GKGCMC 2 cut(s) 348, 857
BstUI CGCG 2 cut(s) 386, 1008
BstV1I GCAGC 6 cut(s) 832, 850, 916, 1384, 1900, 1933
BstV2I GAAGAC 2 cut(s) 200, 228
BsuI GTATCC 1 cut(s) 1107
BtgZI GCGATG 3 cut(s) 132, 367, 947
BtsCI GGATG 8 cut(s) 793, 898, 1048, 1108, 1140, 1441, 1542, 1783
BtsIMutI CAGTG 1 cut(s) 855
BtuMI TCGCGA 2 cut(s) 386, 1008
Cac8I GCNNGC 6 cut(s) 984, 988, 1588, 1685, 1689, 1693
CfoI GCGC 2 cut(s) 128, 868
Csp6I GTAC 2 cut(s) 34, 217
CviAII CATG 6 cut(s) 140, 433, 604, 772, 821, 1943
CviQI GTAC 2 cut(s) 34, 217
DpnI GATC 6 cut(s) 51, 431, 912, 1530, 1793, 1803
DpnII GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
DraIII CACNNNGTG 1 cut(s) 1810
EaeI YGGCCR 1 cut(s) 1194
Eam1104I CTCTTC 4 cut(s) 539, 548, 1008, 1064
EarI CTCTTC 4 cut(s) 539, 548, 1008, 1064
Eco130I CCWWGG 1 cut(s) 1197
Eco24I GRGCYC 1 cut(s) 348
Eco32I GATATC 3 cut(s) 1669, 1729, 1855
Eco47I GGWCC 2 cut(s) 136, 607
Eco57I CTGAAG 2 cut(s) 73, 1064
Eco88I CYCGRG 3 cut(s) 355, 375, 1647
EcoO109I RGGNCCY 3 cut(s) 345, 399, 1244
EcoRII CCWGG 3 cut(s) 349, 1171, 1516
EcoRV GATATC 3 cut(s) 1669, 1729, 1855
EcoT14I CCWWGG 1 cut(s) 1197
EcoT22I ATGCAT 1 cut(s) 878
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 1197
Esp3I CGTCTC 2 cut(s) 189, 386
FaeI CATG 6 cut(s) 143, 436, 607, 775, 824, 1946
FalI AAGNNNNNCTT 6 cut(s) 71, 103, 979, 1011, 1574, 1606
FaqI GGGAC 1 cut(s) 98
FatI CATG 6 cut(s) 139, 432, 603, 771, 820, 1942
FauI CCCGC 1 cut(s) 1574
FauNDI CATATG 1 cut(s) 1873
Fnu4HI GCNGC 8 cut(s) 124, 740, 846, 864, 930, 1398, 1889, 1947
FokI GGATG 8 cut(s) 800, 905, 1055, 1095, 1147, 1448, 1529, 1790
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 8 cut(s) 124, 740, 846, 864, 930, 1398, 1889, 1947
FspBI CTAG 3 cut(s) 1260, 1311, 1896
GlaI GCGC 2 cut(s) 127, 867
GluI GCNGC 8 cut(s) 124, 740, 846, 864, 930, 1398, 1889, 1947
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 3 cut(s) 1079, 1404, 1587
HapII CCGG 2 cut(s) 425, 735
HhaI GCGC 2 cut(s) 128, 868
Hin1I GRCGYC 1 cut(s) 1522
Hin1II CATG 6 cut(s) 143, 436, 607, 775, 824, 1946
Hin6I GCGC 2 cut(s) 126, 866
HinP1I GCGC 2 cut(s) 126, 866
HindIII AAGCTT 1 cut(s) 776
HpaII CCGG 2 cut(s) 425, 735
HphI GGTGA 3 cut(s) 188, 794, 1131
Hpy166II GTNNAC 3 cut(s) 100, 855, 1621
Hpy8I GTNNAC 3 cut(s) 100, 855, 1621
HpyAV CCTTC 4 cut(s) 193, 199, 466, 1005
HpyCH4III ACNGT 5 cut(s) 104, 504, 611, 1090, 1459
HpyCH4IV ACGT 2 cut(s) 225, 1522
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 748, 842, 983, 1252
HpySE526I ACGT 2 cut(s) 225, 1522
Hsp92I GRCGYC 1 cut(s) 1522
Hsp92II CATG 6 cut(s) 143, 436, 607, 775, 824, 1946
HspAI GCGC 2 cut(s) 126, 866
Kzo9I GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 4 cut(s) 271, 544, 1327, 1932
Lsp1109I GCAGC 6 cut(s) 832, 850, 916, 1384, 1900, 1933
LweI GCATC 4 cut(s) 916, 924, 1033, 1117
MaeI CTAG 3 cut(s) 1260, 1311, 1896
MaeII ACGT 2 cut(s) 225, 1522
MaeIII GTNAC 3 cut(s) 176, 1033, 1137
MalI GATC 6 cut(s) 51, 431, 912, 1530, 1793, 1803
MbiI CCGCTC 1 cut(s) 1935
MboI GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
MfeI CAATTG 1 cut(s) 1532
MhlI GDGCHC 5 cut(s) 348, 857, 966, 1633, 1646
MlsI TGGCCA 1 cut(s) 1196
MluCI AATT 8 cut(s) 41, 61, 210, 1225, 1296, 1532, 1756, 1923
MluNI TGGCCA 1 cut(s) 1196
MlyI GAGTC 4 cut(s) 173, 358, 524, 1823
MmeI TCCRAC 2 cut(s) 777, 934
Mox20I TGGCCA 1 cut(s) 1196
Mph1103I ATGCAT 1 cut(s) 878
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 1196
MseI TTAA 2 cut(s) 300, 417
MslI CAYNNNNRTG 2 cut(s) 311, 825
Msp20I TGGCCA 1 cut(s) 1196
MspA1I CMGCKG 1 cut(s) 1569
MspI CCGG 2 cut(s) 425, 735
MspR9I CCNGG 4 cut(s) 351, 736, 1173, 1518
MunI CAATTG 1 cut(s) 1532
MvaI CCWGG 3 cut(s) 351, 1173, 1518
MvnI CGCG 2 cut(s) 386, 1008
MwoI GCNNNNNNNGC 5 cut(s) 123, 748, 842, 983, 1252
NciI CCSGG 1 cut(s) 736
NdeI CATATG 1 cut(s) 1873
NdeII GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
NlaIII CATG 6 cut(s) 143, 436, 607, 775, 824, 1946
NlaIV GGNNCC 7 cut(s) 106, 346, 347, 400, 1026, 1245, 1474
NmuCI GTSAC 3 cut(s) 176, 1033, 1137
NruI TCGCGA 2 cut(s) 386, 1008
NsiI ATGCAT 1 cut(s) 878
NspV TTCGAA 1 cut(s) 754
PaeR7I CTCGAG 1 cut(s) 1647
PciSI GCTCTTC 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 6 cut(s) 153, 256, 756, 1352, 1562, 1847
PfoI TCCNGGA 1 cut(s) 1516
PkrI GCNGC 8 cut(s) 125, 741, 847, 865, 931, 1399, 1890, 1948
PleI GAGTC 4 cut(s) 173, 358, 524, 1822
PpsI GAGTC 4 cut(s) 173, 358, 524, 1822
Psp6I CCWGG 3 cut(s) 349, 1171, 1516
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 3 cut(s) 349, 1171, 1516
PspN4I GGNNCC 7 cut(s) 106, 346, 347, 400, 1026, 1245, 1474
PspOMI GGGCCC 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 1647
RruI TCGCGA 2 cut(s) 386, 1008
RsaI GTAC 2 cut(s) 35, 218
RsaNI GTAC 2 cut(s) 34, 217
RseI CAYNNNNRTG 2 cut(s) 311, 825
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 2 cut(s) 300, 417
SatI GCNGC 8 cut(s) 124, 740, 846, 864, 930, 1398, 1889, 1947
Sau3AI GATC 6 cut(s) 49, 429, 910, 1528, 1791, 1801
SchI GAGTC 4 cut(s) 173, 358, 524, 1823
ScrFI CCNGG 4 cut(s) 351, 736, 1173, 1518
SduI GDGCHC 5 cut(s) 348, 857, 966, 1633, 1646
SfaNI GCATC 4 cut(s) 916, 924, 1033, 1117
Sfr274I CTCGAG 1 cut(s) 1647
SfuI TTCGAA 1 cut(s) 754
SinI GGWCC 2 cut(s) 136, 607
SlaI CTCGAG 1 cut(s) 1647
SmiMI CAYNNNNRTG 2 cut(s) 311, 825
SmlI CTYRAG 3 cut(s) 743, 1591, 1647
SmoI CTYRAG 3 cut(s) 743, 1591, 1647
SpeI ACTAGT 1 cut(s) 1259
Sse9I AATT 8 cut(s) 41, 61, 210, 1225, 1296, 1532, 1756, 1923
SsiI CCGC 6 cut(s) 123, 488, 739, 1567, 1858, 1935
SspI AATATT 1 cut(s) 1578
SspMI CTAG 3 cut(s) 1260, 1311, 1896
StyD4I CCNGG 4 cut(s) 349, 734, 1171, 1516
StyI CCWWGG 1 cut(s) 1197
TaaI ACNGT 5 cut(s) 104, 504, 611, 1090, 1459
TaiI ACGT 2 cut(s) 228, 1525
TaqI TCGA 8 cut(s) 437, 480, 533, 620, 754, 1302, 1350, 1648
TasI AATT 8 cut(s) 41, 61, 210, 1225, 1296, 1532, 1756, 1923
TatI WGTACW 1 cut(s) 33
TauI GCSGC 2 cut(s) 126, 742
TfiI GAWTC 6 cut(s) 153, 256, 756, 1352, 1562, 1847
Tru1I TTAA 2 cut(s) 300, 417
Tru9I TTAA 2 cut(s) 300, 417
TscAI CASTG 1 cut(s) 862
TseFI GTSAC 3 cut(s) 176, 1033, 1137
TseI GCWGC 6 cut(s) 845, 863, 929, 1397, 1888, 1946
Tsp45I GTSAC 3 cut(s) 176, 1033, 1137
TspDTI ATGAA 9 cut(s) 161, 206, 295, 629, 788, 962, 1359, 1794, 1835
TspGWI ACGGA 1 cut(s) 1502
TspRI CASTG 1 cut(s) 862
VneI GTGCAC 1 cut(s) 853
VpaK11BI GGWCC 2 cut(s) 136, 607
XapI RAATTY 2 cut(s) 1225, 1296
XbaI TCTAGA 1 cut(s) 1895
XhoI CTCGAG 1 cut(s) 1647
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 3 cut(s) 1260, 1311, 1896
ZraI GACGTC 1 cut(s) 1523
Zsp2I ATGCAT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.