FvH4_4g24880

Prokaryotic RING finger family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009682
Physical Location & Seq
Reverse (-)
26846705 .. 26849097
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24880.t1

Sequence Viewer

Length: 735 bp
ATGTGGCAAGATCAGCCCAGCAAATCTTGTTTCGCAGAATCTATCAAGGCTCTTGAAGCTGATATACATCATGCCAATAGCTTGGCAGCTTCTCTTCCCAGAGATTATGGTGGGAATTGTATCCAAATGAGATTGTCTTACAGCCCCTTTGCCCCTCTTTTCCTTTATTTCATTGAATGGATGGATTATAGTTGCACTGATATACTTCCCAATTACTTGGGCCTCCTCCACATACTTGTATACAAGGTATATGTTGATGGGGTTCCTTCAATATCCTCCAAAGAACAAAAGGTCACTATAAGGGAATTTTATGGTGTAATATACCCTTATCTTAGACAACTTGAAGGTGAGTTTAACGAACTGGAAGATAGTAAGAAGAGAAGCCAAAAGAGGATAGAAGACAGGAAAAACCTCTCTGATATTGATCTAGAAAGAGATGATGAATGTGGTATATGTATGGAAAACTATGCAAAGATGGTGTTGCCAAATTGTGGGCATTCAATGTGCATCACCTGCTTCCATGATTGGAATGCCAGATCACAGTCCTGCCCTTTTTGCCGTGGCAGCCTCAAGAGAGTTAGCTCTACAGATTTGTGGGTACTCACTAGAAACAGCGACGTGATTGATGCCGTAACCCTTGCAAAGGAGAACCTCAGACGCTTCTATCTTTATGTTGAAAATATTCCTGTTATTATGCCAGCAACACATGTTGTGGTATATGATTACATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000151 GO:0000209 GO:0000726 GO:0000781 GO:0001775 GO:0002200 GO:0002204 GO:0002208 GO:0002250 GO:0002252 GO:0002263 GO:0002285 GO:0002312 GO:0002366 GO:0002376 GO:0002377 GO:0002381 GO:0002440 GO:0002443 GO:0002449 GO:0002460 GO:0002520 GO:0002562 GO:0003006 GO:0003674 GO:0003682 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006955 GO:0006974 GO:0006996 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016043 GO:0016064 GO:0016444 GO:0016445 GO:0016447 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019724 GO:0019787 GO:0019941 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032785 GO:0032991 GO:0033522 GO:0033523 GO:0033554 GO:0034243 GO:0034244 GO:0034641 GO:0034728 GO:0035861 GO:0036211 GO:0042113 GO:0042393 GO:0042802 GO:0042803 GO:0043044 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043486 GO:0043632 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0045190 GO:0045321 GO:0045739 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0046649 GO:0046872 GO:0046914 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051276 GO:0051603 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070534 GO:0070535 GO:0070647 GO:0070936 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0098687 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001020 GO:2001022 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

245

Amino Acids

28.29

Weight (kDa)

5.55

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 146 - 192 1.1e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 147 - 187 3.8e-09 Ring finger domain
zf-RING_5 PF14634 148 - 187 1.3e-06 zinc-RING finger domain
zf-C3HC4_2 PF13923 148 - 186 1.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 149 - 186 1.1e-06 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 149 - 190 1.6e-06 Prokaryotic RING finger family 4
zf-RING_UBOX PF13445 149 - 184 7.3e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 491
AccI GTMKAC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 2 cut(s) 491, 643
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 6 cut(s) 56, 176, 270, 344, 501, 677
AjiI CACGTC 1 cut(s) 619
AluBI AGCT 4 cut(s) 59, 81, 89, 582
AluI AGCT 4 cut(s) 59, 81, 89, 582
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 86, 564
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 359, 502
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 98, 576
BccI CCATC 3 cut(s) 175, 251, 469
BceAI ACGGC 2 cut(s) 543, 614
BciVI GTATCC 1 cut(s) 131
BfaI CTAG 2 cut(s) 428, 606
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 521
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 2 cut(s) 87, 565
BlsI GCNGC 2 cut(s) 88, 566
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 516, 616
BpiI GAAGAC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 554
BsaBI GATNNNNATC 2 cut(s) 66, 423
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 643
Bse1I ACTGG 1 cut(s) 366
Bse8I GATNNNNATC 2 cut(s) 66, 423
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 2 cut(s) 66, 423
BseLI CCNNNNNNNGG 2 cut(s) 491, 643
BseMII CTCAG 1 cut(s) 667
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 98, 576
BseYI CCCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 491, 643
BsmI GAATGC 2 cut(s) 496, 535
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 10, 424, 536
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 666
BspLI GGNNCC 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 521
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 3 cut(s) 10, 424, 536
BssNAI GTATAC 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 543
Bst6I CTCTTC 2 cut(s) 99, 371
BstAPI GCANNNNNTGC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 699
BstDEI CTNAG 2 cut(s) 332, 653
BstDSI CCRYGG 1 cut(s) 559
BstENI CCTNNNNNAGG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 3 cut(s) 13, 427, 539
BstMBI GATC 3 cut(s) 10, 424, 536
BstMWI GCNNNNNNNGC 5 cut(s) 13, 56, 513, 555, 564
BstNSI RCATGY 2 cut(s) 710, 730
BstSFI CTRYAG 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 98, 576
BstV2I GAAGAC 1 cut(s) 405
BstXI CCANNNNNNTGG 2 cut(s) 82, 217
BstZ17I GTATAC 1 cut(s) 241
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 559
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 699
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 666
Csp6I GTAC 1 cut(s) 599
CviAII CATG 4 cut(s) 71, 521, 707, 727
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 2 cut(s) 332, 653
DpnI GATC 3 cut(s) 12, 426, 538
DpnII GATC 3 cut(s) 10, 424, 536
Eam1104I CTCTTC 2 cut(s) 99, 371
EarI CTCTTC 2 cut(s) 99, 371
EcoNI CCTNNNNNAGG 1 cut(s) 641
FaeI CATG 4 cut(s) 74, 524, 710, 730
FatI CATG 4 cut(s) 70, 520, 706, 726
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 87, 565
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 87, 565
FspBI CTAG 2 cut(s) 428, 606
GluI GCNGC 2 cut(s) 87, 565
GsaI CCCAGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 222
HgaI GACGC 1 cut(s) 666
Hin1II CATG 4 cut(s) 74, 524, 710, 730
HinfI GANTC 1 cut(s) 38
HphI GGTGA 2 cut(s) 359, 502
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 418, 656, 734
Hpy188III TCNNGA 3 cut(s) 53, 428, 571
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 620
HpyAV CCTTC 2 cut(s) 276, 338
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 4 cut(s) 195, 470, 507, 641
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 56, 513, 555, 564
HpyF3I CTNAG 2 cut(s) 332, 653
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 4 cut(s) 74, 524, 710, 730
Kzo9I GATC 3 cut(s) 10, 424, 536
LpnPI CCDG 9 cut(s) 31, 112, 347, 388, 526, 547, 559, 699, 711
Lsp1109I GCAGC 2 cut(s) 98, 576
LweI GCATC 2 cut(s) 516, 616
MaeI CTAG 2 cut(s) 428, 606
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 2 cut(s) 292, 631
MalI GATC 3 cut(s) 12, 426, 538
MboI GATC 3 cut(s) 10, 424, 536
MboII GAAGA 4 cut(s) 86, 377, 388, 410
MluCI AATT 4 cut(s) 115, 211, 305, 487
MnlI CCTC 8 cut(s) 165, 233, 236, 286, 384, 422, 578, 662
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 1 cut(s) 354
Mva1269I GAATGC 2 cut(s) 496, 535
MwoI GCNNNNNNNGC 5 cut(s) 13, 56, 513, 555, 564
NdeII GATC 3 cut(s) 10, 424, 536
NlaIII CATG 4 cut(s) 74, 524, 710, 730
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 2 cut(s) 710, 730
PaqCI CACCTGC 1 cut(s) 521
PciI ACATGT 1 cut(s) 706
PctI GAATGC 2 cut(s) 496, 535
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 2 cut(s) 88, 566
PscI ACATGT 1 cut(s) 706
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 2 cut(s) 87, 565
Sau3AI GATC 3 cut(s) 10, 424, 536
Sau96I GGNCC 1 cut(s) 220
SfaNI GCATC 2 cut(s) 516, 616
SfcI CTRYAG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 4 cut(s) 115, 211, 305, 487
SspI AATATT 1 cut(s) 682
SspMI CTAG 2 cut(s) 428, 606
TaaI ACNGT 1 cut(s) 543
TaiI ACGT 1 cut(s) 621
TasI AATT 4 cut(s) 115, 211, 305, 487
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 86, 564
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 160, 456
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 641
XapI RAATTY 1 cut(s) 305
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 2 cut(s) 710, 730
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 2 cut(s) 428, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.