Prupe.1G238300_v2.0.a1

Prokaryotic RING finger family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009682
Physical Location & Seq
Reverse (-)
25295331 .. 25298198
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G238300.2

Sequence Viewer

Length: 927 bp
ATGTCTCCCACCCCAAACATTCATCAACAAAAACAAAACCAAACCAACTCCCACCCAAAAAGGTCACTCTTTTCATCTTATCCCTCACCCTCTTTCCGCTTTCGTCTTTCTGTTCCTTCTCTTTTCTCCGTCCTAACTCAAAAGGTAGAACATATGTGGCAAGCACAGGCCAGCAAATCTTCTTATGGAGAATCTATCAAAGCTCTTGAAGCTGACATACAACATGCCAATAGCTTGGCAGCTGCTCTTCCCAAAGATTATGGTGGGAACTGCATCCAAATGAGATTATCTTATAGCCCCTTTGCCCCCATTTTCCTGTACTTCATTGAATGGATGGATTATAGTTGCACTGATATACTCCCCAATTATTTAGGCCTTCTCCACATAATTGTATACAAGGTTTATATGGATGGAATGCCTTCAATGTCCTCCAAAGAACAGAAGGTCACTTTAAGGGAATTTTATGCTGTGATATACCCTTATCTTAGACAACTTGAAGGCGAGTTTAACGAACTGGAAGATAATAATAATCATAATTACAATAATAAGAAAAGCCGATGCACAGATGTTTTGAGCCGAAAGAAGATGGAAGGCTGGAGGAAGCTGTCGGATAAAGATCAAGATAGAGATGATGAATGTGGAATATGCATGGAAAACTGTACAAAGATGGTGTTGCCCAACTGTGGGCATTCCATGTGCATCACCTGCTTCCATAATTGGAATGCACGATCGCAATCCTGCCCTTTTTGCCGTGACAGCCTAAAGAGAGTCAGCTCTAGAGATTTGTGGGTTCTCACTAGCAACAGTGATGTGATTGATACAGTTACCCTTGCCAGGGAGAACCTAAGACGTTTCTATCTTTATATTGAAAATCTACCTGTAGTTGTGCCTGCAACACATGTTGTGGTATATGATTACATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000151 GO:0000209 GO:0000726 GO:0000781 GO:0001775 GO:0002200 GO:0002204 GO:0002208 GO:0002250 GO:0002252 GO:0002263 GO:0002285 GO:0002312 GO:0002366 GO:0002376 GO:0002377 GO:0002381 GO:0002440 GO:0002443 GO:0002449 GO:0002460 GO:0002520 GO:0002562 GO:0003006 GO:0003674 GO:0003682 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006955 GO:0006974 GO:0006996 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016043 GO:0016064 GO:0016444 GO:0016445 GO:0016447 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019724 GO:0019787 GO:0019941 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032785 GO:0032991 GO:0033522 GO:0033523 GO:0033554 GO:0034243 GO:0034244 GO:0034641 GO:0034728 GO:0035861 GO:0036211 GO:0042113 GO:0042393 GO:0042802 GO:0042803 GO:0043044 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043486 GO:0043632 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0045190 GO:0045321 GO:0045739 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0046649 GO:0046872 GO:0046914 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051276 GO:0051603 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070534 GO:0070535 GO:0070647 GO:0070936 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0098687 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001020 GO:2001022 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

309

Amino Acids

35.73

Weight (kDa)

7.95

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 713
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 458
AfaI GTAC 2 cut(s) 320, 661
AfiI CCNNNNNNNGG 4 cut(s) 683, 684, 834, 835
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 5 cut(s) 209, 329, 423, 497, 869
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 6 cut(s) 203, 212, 234, 242, 604, 774
AluI AGCT 6 cut(s) 203, 212, 234, 242, 604, 774
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 168, 373
ApeKI GCWGC 2 cut(s) 239, 242
ApoI RAATTY 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 78, 694
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbvI GCAGC 2 cut(s) 229, 251
BccI CCATC 4 cut(s) 328, 404, 580, 661
BceAI ACGGC 1 cut(s) 735
BciT130I CCWGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 777, 798
BfmI CTRYAG 1 cut(s) 879
BfuAI ACCTGC 1 cut(s) 713
BisI GCNGC 2 cut(s) 240, 243
BlsI GCNGC 2 cut(s) 241, 244
Bme1390I CCNGG 1 cut(s) 835
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 3 cut(s) 282, 548, 708
BpmI CTGGAG 1 cut(s) 616
BsaBI GATNNNNATC 2 cut(s) 615, 733
BsaJI CCNNGG 1 cut(s) 834
Bsc4I CCNNNNNNNGG 4 cut(s) 683, 684, 834, 835
Bse1I ACTGG 1 cut(s) 519
Bse8I GATNNNNATC 2 cut(s) 615, 733
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 1 cut(s) 834
BseGI GGATG 3 cut(s) 273, 339, 415
BseJI GATNNNNATC 2 cut(s) 615, 733
BseLI CCNNNNNNNGG 4 cut(s) 683, 684, 834, 835
BseNI ACTGG 1 cut(s) 519
BseXI GCAGC 2 cut(s) 229, 251
Bsh1285I CGRYCG 1 cut(s) 731
BshFI GGCC 2 cut(s) 170, 375
BsiEI CGRYCG 1 cut(s) 731
BslI CCNNNNNNNGG 4 cut(s) 683, 684, 834, 835
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 3 cut(s) 420, 688, 727
BsnI GGCC 2 cut(s) 170, 375
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 2 cut(s) 616, 728
BspACI CCGC 1 cut(s) 97
BspANI GGCC 2 cut(s) 170, 375
BspMI ACCTGC 1 cut(s) 713
BspQI GCTCTTC 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 659
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 834
BssMI GATC 2 cut(s) 616, 728
BssNAI GTATAC 1 cut(s) 394
Bst1107I GTATAC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 4 cut(s) 659, 683, 806, 823
Bst6I CTCTTC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 705
BstAUI TGTACA 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 162, 172, 891
BstDEI CTNAG 2 cut(s) 485, 845
BstF5I GGATG 3 cut(s) 273, 339, 415
BstKTI GATC 2 cut(s) 619, 731
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 616, 728
BstMCI CGRYCG 1 cut(s) 731
BstMWI GCNNNNNNNGC 4 cut(s) 209, 705, 747, 756
BstNI CCWGG 1 cut(s) 835
BstNSI RCATGY 3 cut(s) 227, 902, 922
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 2 cut(s) 229, 251
BstXI CCANNNNNNTGG 1 cut(s) 235
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 170, 375
BtsCI GGATG 3 cut(s) 273, 339, 415
BtsIMutI CAGTG 2 cut(s) 348, 811
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 3 cut(s) 162, 172, 891
Csp6I GTAC 2 cut(s) 319, 660
CviAII CATG 5 cut(s) 224, 649, 694, 899, 919
CviQI GTAC 2 cut(s) 319, 660
DdeI CTNAG 2 cut(s) 485, 845
DpnI GATC 2 cut(s) 618, 730
DpnII GATC 2 cut(s) 616, 728
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 833
EcoT22I ATGCAT 1 cut(s) 650
FaeI CATG 5 cut(s) 227, 652, 697, 902, 922
FatI CATG 5 cut(s) 223, 648, 693, 898, 918
FauNDI CATATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 240, 243
FokI GGATG 3 cut(s) 260, 346, 422
Fsp4HI GCNGC 2 cut(s) 240, 243
FspBI CTAG 2 cut(s) 777, 798
GluI GCNGC 2 cut(s) 240, 243
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 2 cut(s) 170, 375
Hin1II CATG 5 cut(s) 227, 652, 697, 902, 922
HinfI GANTC 2 cut(s) 191, 768
HphI GGTGA 2 cut(s) 78, 694
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 610, 926
Hpy188III TCNNGA 3 cut(s) 206, 620, 777
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 6 cut(s) 126, 386, 429, 436, 491, 584
HpyCH4III ACNGT 4 cut(s) 659, 683, 806, 823
HpyCH4IV ACGT 1 cut(s) 850
HpyCH4V TGCA 7 cut(s) 273, 348, 561, 648, 699, 725, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 705, 747, 756
HpyF3I CTNAG 2 cut(s) 485, 845
HpySE526I ACGT 1 cut(s) 850
Hsp92II CATG 5 cut(s) 227, 652, 697, 902, 922
Kzo9I GATC 2 cut(s) 616, 728
LguI GCTCTTC 1 cut(s) 252
Lsp1109I GCAGC 2 cut(s) 229, 251
LweI GCATC 3 cut(s) 282, 548, 708
MaeI CTAG 2 cut(s) 777, 798
MaeII ACGT 1 cut(s) 850
MaeIII GTNAC 4 cut(s) 63, 445, 752, 823
MalI GATC 2 cut(s) 618, 730
MboI GATC 2 cut(s) 616, 728
MboII GAAGA 4 cut(s) 171, 239, 530, 595
MluCI AATT 5 cut(s) 364, 387, 458, 535, 715
MlyI GAGTC 1 cut(s) 777
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 4 cut(s) 94, 100, 439, 591
Mph1103I ATGCAT 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 2 cut(s) 452, 507
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 835
Mva1269I GAATGC 3 cut(s) 420, 688, 727
MvaI CCWGG 1 cut(s) 835
MwoI GCNNNNNNNGC 4 cut(s) 209, 705, 747, 756
NdeI CATATG 1 cut(s) 153
NdeII GATC 2 cut(s) 616, 728
NlaIII CATG 5 cut(s) 227, 652, 697, 902, 922
NmuCI GTSAC 3 cut(s) 63, 445, 752
NsiI ATGCAT 1 cut(s) 650
NspI RCATGY 3 cut(s) 227, 902, 922
PaqCI CACCTGC 1 cut(s) 713
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 898
PciSI GCTCTTC 1 cut(s) 252
PctI GAATGC 3 cut(s) 420, 688, 727
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 241, 244
Ple19I CGATCG 1 cut(s) 731
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PscI ACATGT 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PvuI CGATCG 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 320, 661
RsaNI GTAC 2 cut(s) 319, 660
RseI CAYNNNNRTG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 452, 507
SatI GCNGC 2 cut(s) 240, 243
Sau3AI GATC 2 cut(s) 616, 728
SchI GAGTC 1 cut(s) 777
ScrFI CCNGG 1 cut(s) 835
SfaNI GCATC 3 cut(s) 282, 548, 708
SfcI CTRYAG 1 cut(s) 879
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 5 cut(s) 364, 387, 458, 535, 715
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 1 cut(s) 97
SspMI CTAG 2 cut(s) 777, 798
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 833
TaaI ACNGT 4 cut(s) 659, 683, 806, 823
TaiI ACGT 1 cut(s) 853
TasI AATT 5 cut(s) 364, 387, 458, 535, 715
TatI WGTACW 2 cut(s) 318, 659
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 452, 507
Tru9I TTAA 2 cut(s) 452, 507
TscAI CASTG 2 cut(s) 355, 811
TseFI GTSAC 3 cut(s) 63, 445, 752
TseI GCWGC 2 cut(s) 239, 242
Tsp45I GTSAC 3 cut(s) 63, 445, 752
TspDTI ATGAA 4 cut(s) 11, 63, 313, 648
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 2 cut(s) 355, 811
XapI RAATTY 1 cut(s) 458
XbaI TCTAGA 1 cut(s) 776
XceI RCATGY 3 cut(s) 227, 902, 922
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 2 cut(s) 777, 798
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.