Rh4DG312700

Prokaryotic RING finger family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009682
Physical Location & Seq
Reverse (-)
53540046 .. 53543359
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG312700.1

Sequence Viewer

Length: 609 bp
ATGAGATTGTCTTACAGCCCCTTTGCCCCTCTTTTCCTTTATTTCATTGAATGGATGGATTATAGTTGCACTGATATACTTCCCAATTACTTGGGCCTCCTCCACATAATTGTATACAAGGTATATGTTGATGGGGTTCCTTCAATATCCTCCAAAGAACAAAAGGTCACTATAAGGGAATTTTATGCTGTAATATACCCTTATCTTAGACAACTTGAAGGCGAGTTTAACGAACTGGAAGATAATAAGAAGAGAAGCCAAAAGAGGATGGAAGACAGGAAAAACCTCTCTGATCAGGATCTAGAAAGAGATGATGAATGTGGTATATGTATGGAAAACTATGCAAAGATGGTGTTGCCGAATTGTGGGCATTCTATGTGCATCACCTGCTTCCATGATTGGAATGCGCGATCACAGTCCTGCCCTTTTTGCCGTGGCAACCTCAAGAGAGTTAGCTCTACAGATTTGTGGGTACTCACTAGAAACAGCGACGTGATTGATGCCGTAACCCTTGCAAAAGAGAACCTTAGACGCTTCTATCTTTATGTTGAAAATATTCCTGTTGTTATGCCAGCAACACATGTTGTGGTATATGATTACATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000151 GO:0000209 GO:0000726 GO:0000781 GO:0001775 GO:0002200 GO:0002204 GO:0002208 GO:0002250 GO:0002252 GO:0002263 GO:0002285 GO:0002312 GO:0002366 GO:0002376 GO:0002377 GO:0002381 GO:0002440 GO:0002443 GO:0002449 GO:0002460 GO:0002520 GO:0002562 GO:0003006 GO:0003674 GO:0003682 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006955 GO:0006974 GO:0006996 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016043 GO:0016064 GO:0016444 GO:0016445 GO:0016447 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019724 GO:0019787 GO:0019941 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032785 GO:0032991 GO:0033522 GO:0033523 GO:0033554 GO:0034243 GO:0034244 GO:0034641 GO:0034728 GO:0035861 GO:0036211 GO:0042113 GO:0042393 GO:0042802 GO:0042803 GO:0043044 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043486 GO:0043632 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0045190 GO:0045321 GO:0045739 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0046649 GO:0046872 GO:0046914 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051276 GO:0051603 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070534 GO:0070535 GO:0070647 GO:0070936 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0098687 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001020 GO:2001022 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

202

Amino Acids

23.79

Weight (kDa)

5.61

Isoelectric Point (pI)

72.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 104 - 150 7e-11 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 105 - 145 2.8e-09 Ring finger domain
zf-RING_5 PF14634 106 - 145 9.7e-07 zinc-RING finger domain
zf-C3HC4_2 PF13923 106 - 144 1.4e-06 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 107 - 149 7.7e-07 Prokaryotic RING finger family 4
zf-C3HC4 PF00097 107 - 144 8e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 107 - 142 5.4e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 409
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 4 cut(s) 50, 144, 218, 551
AjiI CACGTC 1 cut(s) 493
AluBI AGCT 1 cut(s) 456
AluI AGCT 1 cut(s) 456
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 279
BccI CCATC 4 cut(s) 49, 125, 262, 343
BceAI ACGGC 2 cut(s) 417, 488
BclI TGATCA 1 cut(s) 292
BfaI CTAG 2 cut(s) 302, 480
BfmI CTRYAG 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 2 cut(s) 390, 490
BpiI GAAGAC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 60, 273
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 365
BsmI GAATGC 2 cut(s) 370, 409
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 292, 298, 410
BspANI GGCC 1 cut(s) 96
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 3 cut(s) 292, 298, 410
BssNAI GTATAC 1 cut(s) 115
Bst1107I GTATAC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 417
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 206, 527
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 60, 273
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 295, 301, 413
BstMBI GATC 3 cut(s) 292, 298, 410
BstMWI GCNNNNNNNGC 2 cut(s) 387, 429
BstNSI RCATGY 2 cut(s) 584, 604
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 2 cut(s) 60, 273
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 573
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 540
Csp6I GTAC 1 cut(s) 473
CviAII CATG 3 cut(s) 395, 581, 601
CviJI RGCY 4 cut(s) 18, 96, 258, 456
CviKI_1 RGCY 4 cut(s) 18, 96, 258, 456
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 2 cut(s) 206, 527
DpnI GATC 3 cut(s) 294, 300, 412
DpnII GATC 3 cut(s) 292, 298, 410
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
FaeI CATG 3 cut(s) 398, 584, 604
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 3 cut(s) 394, 580, 600
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 114
FokI GGATG 2 cut(s) 67, 280
FspBI CTAG 2 cut(s) 302, 480
GlaI GCGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 96
HgaI GACGC 1 cut(s) 540
HhaI GCGC 1 cut(s) 409
Hin1II CATG 3 cut(s) 398, 584, 604
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 292, 608
Hpy188III TCNNGA 3 cut(s) 296, 302, 445
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 150, 212
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 4 cut(s) 69, 344, 381, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 429
HpyF3I CTNAG 2 cut(s) 206, 527
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 3 cut(s) 398, 584, 604
HspAI GCGC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 292, 298, 410
LpnPI CCDG 7 cut(s) 221, 262, 281, 400, 433, 573, 585
LweI GCATC 2 cut(s) 390, 490
MaeI CTAG 2 cut(s) 302, 480
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 166, 505
MalI GATC 3 cut(s) 294, 300, 412
MboI GATC 3 cut(s) 292, 298, 410
MboII GAAGA 3 cut(s) 251, 262, 284
MflI RGATCY 1 cut(s) 298
MluCI AATT 4 cut(s) 85, 108, 179, 361
MnlI CCTC 7 cut(s) 39, 107, 110, 160, 258, 296, 452
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 1 cut(s) 228
Mva1269I GAATGC 2 cut(s) 370, 409
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 387, 429
NdeII GATC 3 cut(s) 292, 298, 410
NlaIII CATG 3 cut(s) 398, 584, 604
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 2 cut(s) 584, 604
PaqCI CACCTGC 1 cut(s) 395
PciI ACATGT 1 cut(s) 580
PctI GAATGC 2 cut(s) 370, 409
PdmI GAANNNNTTC 1 cut(s) 555
PscI ACATGT 1 cut(s) 580
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 3 cut(s) 292, 298, 410
Sau96I GGNCC 1 cut(s) 94
SetI ASST 8 cut(s) 123, 168, 288, 389, 444, 458, 495, 528
SfaNI GCATC 2 cut(s) 390, 490
SfcI CTRYAG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 4 cut(s) 85, 108, 179, 361
SspI AATATT 1 cut(s) 556
SspMI CTAG 2 cut(s) 302, 480
TaaI ACNGT 1 cut(s) 417
TaiI ACGT 1 cut(s) 495
TasI AATT 4 cut(s) 85, 108, 179, 361
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 34, 330
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 2 cut(s) 584, 604
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 2 cut(s) 302, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.