Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009054

Physical Location & Seq

Genomic Coordinates Forward (+)

51149087 .. 51149826

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0337800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATGAAATCATCATTGGCAATCATGTTTCAGTTGTTCTCTGTCGTTCTGATGGCTAACATGGGCCAAATGAAATTAGCAGAAGCCAGCGTTAACAGGATGCTCTCGCAAGCTGCTGATCAGAACGGCATTGTTCTTCCTTGCCCGCCCGGCTGTCCGCACAATCATACTCATCCTAATTGCTGTGACTGTGATACGACCAAAGGTTCCTGCAACGAGTGTTGCAAAACCAGCACTCCATTGATTGTAAGGCGCAACAAACGTCCTTTATTCCCAGATGCTGATCAGAACGGCATTGTTCTTCGTATGTACTCTTACCTCTTTGATGGATCTATATATCCACTGTTCTTAACTTTAGTTCTTGCCCGCCCGGCTGTCCGCACAATCTTACTCATCCTAATTGCTGCGACTGTGATTTCACCAAAGGTTCCTGCAAGAGGTGTTGCTAAATTTAATTCCCTTGAATTAATCCTGGCTGCTGTTGCAATTACGCTTCCCCAATTATCAAAGTGCCTAGCTTGTTCTGCTCAGCTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase

Protein Analysis

179

Amino Acids

19.42

Weight (kDa)

9.0

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60800 AT1G60800
fragaria_vesca	FvH4_4g32990 FvH4_4g32990 FvH4_4g32990
malus_domestica	MD13G1095500.v1.1 MD16G1097000.v1.1
prunus_persica	Prupe.1G249800_v2.0.a1 Prupe.1G249800_v2.0.a1
pyrus_communis	pycom13g08320 pycom16g08260
rosa_chinensis	RchiOBHm_Chr4g0442011
rosa_laevigata	RLG00000006051
rosa_multiflora	Rmu_sc0002501.1_g000019
rosa_roxburghii	Rroxscaffold_5G00382890
rosa_rugosa	Rorug04G0337700 Rorug04G0337800 Rorug04G0337900
rosa_samantha	Rh4AG389700 Rh4BG403100 Rh4DG396300
rosa_wichuraiana	Rw4G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	146, 158, 367, 379
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	449
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	471
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	113, 518, 532
AluI	AGCT	3 cut(s)	113, 518, 532
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	113, 404, 476
ApoI	RAATTY	1 cut(s)	449
AseI	ATTAAT	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	150, 371
AsuHPI	GGTGA	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	100, 391, 463
BccI	CCATC	2 cut(s)	46, 320
BceAI	ACGGC	2 cut(s)	142, 307
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	2 cut(s)	118, 283
BcnI	CCSGG	2 cut(s)	150, 371
BfaI	CTAG	1 cut(s)	515
BglI	GCCNNNNNGGC	2 cut(s)	150, 371
BisI	GCNGC	3 cut(s)	114, 405, 477
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	3 cut(s)	115, 406, 478
Bme1390I	CCNGG	3 cut(s)	150, 371, 473
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	208, 429
BmrFI	CCNGG	3 cut(s)	150, 371, 473
BmsI	GCATC	2 cut(s)	90, 268
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	150, 371
BsaBI	GATNNNNATC	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	473
BseGI	GGATG	3 cut(s)	105, 172, 393
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	100, 391, 463
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	150, 371
BslI	CCNNNNNNNGG	1 cut(s)	437
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	118, 283, 329
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	4 cut(s)	146, 158, 367, 379
BspANI	GGCC	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	208, 429
BspPI	GGATC	1 cut(s)	337
BssMI	GATC	3 cut(s)	118, 283, 329
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	3 cut(s)	191, 345, 412
BstC8I	GCNNGC	4 cut(s)	88, 111, 146, 367
BstDEI	CTNAG	1 cut(s)	528
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	105, 172, 393
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	3 cut(s)	121, 286, 332
BstMBI	GATC	3 cut(s)	118, 283, 329
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 231, 371, 482, 524
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	148, 369, 471
BstV1I	GCAGC	3 cut(s)	100, 391, 463
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	105, 172, 393
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	4 cut(s)	88, 111, 146, 367
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	25, 61
CviJI	RGCY	9 cut(s)	56, 66, 86, 113, 153, 374, 476, 518, 532
CviKI_1	RGCY	9 cut(s)	56, 66, 86, 113, 153, 374, 476, 518, 532
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	3 cut(s)	120, 285, 331
DpnII	GATC	3 cut(s)	118, 283, 329
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	28, 64
FaiI	YATR	6 cut(s)	26, 62, 168, 308, 335, 337
FatI	CATG	2 cut(s)	24, 60
FauI	CCCGC	2 cut(s)	153, 374
FbaI	TGATCA	2 cut(s)	118, 283
Fnu4HI	GCNGC	3 cut(s)	114, 405, 477
FokI	GGATG	3 cut(s)	112, 159, 380
Fsp4HI	GCNGC	3 cut(s)	114, 405, 477
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	3 cut(s)	114, 405, 477
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	150, 371
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	28, 64
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	150, 371
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	51, 123, 288
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	3 cut(s)	191, 345, 412
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	213, 225, 434, 485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 231, 371, 482, 524
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	28, 64
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	118, 283
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	118, 283, 329
LmnI	GCTCC	1 cut(s)	537
Lsp1109I	GCAGC	3 cut(s)	100, 391, 463
LweI	GCATC	2 cut(s)	90, 268
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	120, 285, 331
MboI	GATC	3 cut(s)	118, 283, 329
MboII	GAAGA	2 cut(s)	128, 293
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	8 cut(s)	74, 178, 399, 449, 454, 464, 486, 500
MnlI	CCTC	2 cut(s)	329, 431
MseI	TTAA	4 cut(s)	93, 350, 453, 467
MspI	CCGG	2 cut(s)	150, 371
MspR9I	CCNGG	3 cut(s)	150, 371, 473
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	5 cut(s)	150, 231, 371, 482, 524
NciI	CCSGG	2 cut(s)	150, 371
NdeII	GATC	3 cut(s)	118, 283, 329
NlaIII	CATG	2 cut(s)	28, 64
NlaIV	GGNNCC	2 cut(s)	208, 429
NmuCI	GTSAC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	115, 406, 478
PshBI	ATTAAT	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	208, 429
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	4 cut(s)	93, 350, 453, 467
SatI	GCNGC	3 cut(s)	114, 405, 477
Sau3AI	GATC	3 cut(s)	118, 283, 329
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	3 cut(s)	150, 371, 473
SetI	ASST	8 cut(s)	115, 208, 265, 321, 429, 442, 520, 534
SfaNI	GCATC	2 cut(s)	90, 268
Sse9I	AATT	8 cut(s)	74, 178, 399, 449, 454, 464, 486, 500
SsiI	CCGC	4 cut(s)	146, 158, 367, 379
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	148, 369, 471
TaaI	ACNGT	3 cut(s)	191, 345, 412
TaiI	ACGT	1 cut(s)	265
TasI	AATT	8 cut(s)	74, 178, 399, 449, 454, 464, 486, 500
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	4 cut(s)	93, 350, 453, 467
Tru9I	TTAA	4 cut(s)	93, 350, 453, 467
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	113, 404, 476
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	20, 86
TspRI	CASTG	1 cut(s)	348
VspI	ATTAAT	1 cut(s)	467
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	1 cut(s)	449
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.