Rorug04G0348900

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
52120161 .. 52123083
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0348900.1

Sequence Viewer

Length: 1227 bp
ATGTGTGGCACCACTGATCAGAACCCTAACCCTGCAACCCCTAACAAAACACCGTCAGCTAATGGCAATGGCACAACAAGGTCCAGCGTTTCACCTGACACTGTCCTCAATCTCGAACAGGGTGACCCAACAATGTTCGAACCGTACTGGAAAAAGATGGGGGACAAGGGTACGATGGTGATCTCCGGCAGCCAGTGGATGAGCTATGTCAGCGATTTCACCAACATCTGCTTTTTTATGGAGCCAGAATTTGAGGGTGCGGTTAGAAGACTTCATCGGACGGTTGGGAATGCTGTGGTGGACGGCCGTCACATTGTGGTGGGGACAGGCTCCACGCAGCTCTACCAGGCGGCGCTGTATGCTCTCACTTCTCCTGGTGGGGCTGAGCCGATCAGTGTCGTGTCTGCCGCTCCTTACTACTCGTCATATCCAGACGAGACAGACTATCTCCGTTCAGGGCTTTACAGATGGGCAGGTGATGCGTATGCCTTTGATAAGAAGGGACATGGAGATTACATAGAGGTGGTGAACACTCCAAACAACCCAGATGGTACTAATCGGAAAGCCGTGGTGAAATACAGACCAGATGATCAAGTTCAAGGGAAGCTTATTCATGACCTTGCCTACTATTGGCCTCAATACACTGCCATTACTGCTCCTCTCGATGAAGACATTATGTACTTCACATTTTCAAAAAGCACGGGACATGCTGGTTCCCGTATTGGATGGGCTATCGTGAAGGACAAAGAGATTGCTAAGAAGATGGCTAAATTCGTAGAGCTGAGTACACTTGGTGTGTCCAAGGTTTCTCAGCACCGAGCTGCAAAGTTAATGGGAGTGATTTGTGATGGCTATCAAAATTGCAAGGCCAAAAACTCTGAGCTCTTCTTTGAGCACTGCCAGAACCTCATGGCTCAAAGATGGGAGAGGCTGAGAGAAGTGGTCGAGCGCAGTGAAATTTTCAGTCTGCCCAAGTATCCCAAAGAGTACTGCCTCTTTTCTGGAGAATTCAATGAATCACATCCAGCATTTGCGTGGTTGAAGTGCAAGGAAGACATAGACTTGGAGAAGTTTATAAGAGGATGCATCAAAGTGCAAGGAAGAACAGGGAGGAAGTTTGGGAGTGATCAAAAGTATTTAAGGCTTAGCATGCTGAGCAAGGATGAGGTTTTCGACCAGTTCTTGGAGAGATTGTCAACTATTAAAGCCATTAGTAATGGGTATTAA

Protein Analysis

408

Amino Acids

45.91

Weight (kDa)

7.55

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 37 - 401 8.8e-137 Allinase
Aminotran_1_2 PF00155 81 - 398 6.3e-10 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AarI CACCTGC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 1183
AccBSI CCGCTC 1 cut(s) 410
AciI CCGC 3 cut(s) 260, 350, 408
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 4 cut(s) 248, 770, 957, 1007
AdeI CACNNNGTG 2 cut(s) 316, 794
AfaI GTAC 6 cut(s) 146, 172, 553, 680, 787, 989
AfiI CCNNNNNNNGG 2 cut(s) 630, 1183
AgsI TTSAA 4 cut(s) 599, 693, 1012, 1042
AjnI CCWGG 2 cut(s) 345, 373
AluBI AGCT 7 cut(s) 59, 204, 340, 607, 781, 821, 883
AluI AGCT 7 cut(s) 59, 204, 340, 607, 781, 821, 883
Alw21I GWGCWC 2 cut(s) 885, 897
Alw26I GTCTC 1 cut(s) 431
AoxI GGCC 3 cut(s) 304, 632, 867
ApeKI GCWGC 3 cut(s) 189, 337, 821
ApoI RAATTY 4 cut(s) 248, 770, 957, 1007
AspLEI GCGC 2 cut(s) 355, 951
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 7 cut(s) 84, 134, 190, 211, 488, 538, 583
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 885
BbsI GAAGAC 3 cut(s) 274, 675, 1059
Bbv12I GWGCWC 2 cut(s) 885, 897
BbvI GCAGC 3 cut(s) 201, 349, 808
BccI CCATC 8 cut(s) 151, 169, 462, 542, 720, 757, 842, 915
BceAI ACGGC 3 cut(s) 291, 319, 551
BciT130I CCWGG 2 cut(s) 347, 375
BciVI GTATCC 1 cut(s) 987
BclI TGATCA 3 cut(s) 16, 589, 1126
BcoDI GTCTC 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 987
BisI GCNGC 5 cut(s) 190, 338, 351, 408, 822
BlpI GCTNAGC 3 cut(s) 384, 1145, 1154
BlsI GCNGC 5 cut(s) 191, 339, 352, 409, 823
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 2 cut(s) 347, 375
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 4 cut(s) 10, 243, 331, 715
BmrFI CCNGG 2 cut(s) 347, 375
BmsI GCATC 3 cut(s) 469, 1073, 1095
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 3 cut(s) 274, 675, 1059
BpmI CTGGAG 1 cut(s) 1023
Bpu1102I GCTNAGC 3 cut(s) 384, 1145, 1154
Bpu14I TTCGAA 1 cut(s) 138
BsaBI GATNNNNATC 2 cut(s) 179, 852
BsaJI CCNNGG 2 cut(s) 567, 801
BsaXI ACNNNNNCTCC 2 cut(s) 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 1183
Bse1I ACTGG 3 cut(s) 152, 193, 1177
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 2 cut(s) 179, 852
BseBI CCWGG 2 cut(s) 347, 375
BseDI CCNNGG 2 cut(s) 567, 801
BseGI GGATG 5 cut(s) 204, 731, 1021, 1088, 1168
BseJI GATNNNNATC 2 cut(s) 179, 852
BseLI CCNNNNNNNGG 2 cut(s) 630, 1183
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 6 cut(s) 375, 773, 824, 870, 923, 1145
BseNI ACTGG 3 cut(s) 152, 193, 1177
BseRI GAGGAG 1 cut(s) 648
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 201, 349, 808
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 306, 634, 869
BshNI GGYRCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 2 cut(s) 885, 897
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 4 cut(s) 176, 337, 516, 717
BslI CCNNNNNNNGG 2 cut(s) 630, 1183
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 4 cut(s) 176, 337, 516, 717
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 3 cut(s) 306, 634, 869
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 885, 897
Bsp143I GATC 5 cut(s) 16, 180, 390, 589, 1126
Bsp1720I GCTNAGC 3 cut(s) 384, 1145, 1154
BspACI CCGC 3 cut(s) 260, 350, 408
BspANI GGCC 3 cut(s) 306, 634, 869
BspCNI CTCAG 6 cut(s) 376, 774, 823, 871, 924, 1146
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 4 cut(s) 10, 243, 331, 715
BspMI ACCTGC 1 cut(s) 464
BspQI GCTCTTC 1 cut(s) 890
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 3 cut(s) 152, 193, 1177
BssECI CCNNGG 2 cut(s) 567, 801
BssMI GATC 5 cut(s) 16, 180, 390, 589, 1126
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 2 cut(s) 347, 375
Bst4CI ACNGT 4 cut(s) 54, 103, 144, 283
Bst6I CTCTTC 1 cut(s) 890
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 1151
BstDEI CTNAG 8 cut(s) 384, 756, 782, 810, 879, 932, 1145, 1154
BstDSI CCRYGG 1 cut(s) 567
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 5 cut(s) 204, 731, 1021, 1088, 1168
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 2 cut(s) 355, 951
BstKTI GATC 5 cut(s) 19, 183, 393, 592, 1129
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 5 cut(s) 16, 180, 390, 589, 1126
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 6 cut(s) 210, 359, 479, 653, 1150, 1155
BstNI CCWGG 2 cut(s) 347, 375
BstNSI RCATGY 2 cut(s) 710, 1153
BstPAI GACNNNNGTC 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 345, 373
BstV1I GCAGC 3 cut(s) 201, 349, 808
BstV2I GAAGAC 3 cut(s) 274, 675, 1059
BstZI CGGCCG 1 cut(s) 304
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 3 cut(s) 306, 634, 869
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 5 cut(s) 204, 731, 1021, 1088, 1168
BtsI GCAGTG 3 cut(s) 642, 895, 958
BtsIMutI CAGTG 7 cut(s) 12, 99, 200, 400, 642, 895, 958
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 1151
CciI TCATGA 1 cut(s) 613
CfoI GCGC 2 cut(s) 355, 951
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 6 cut(s) 145, 171, 552, 679, 786, 988
CviAII CATG 5 cut(s) 506, 614, 707, 910, 1150
CviQI GTAC 6 cut(s) 145, 171, 552, 679, 786, 988
DdeI CTNAG 8 cut(s) 384, 756, 782, 810, 879, 932, 1145, 1154
DpnI GATC 5 cut(s) 18, 182, 392, 591, 1128
DpnII GATC 5 cut(s) 16, 180, 390, 589, 1126
DraIII CACNNNGTG 2 cut(s) 316, 794
EaeI YGGCCR 1 cut(s) 304
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Ecl136II GAGCTC 1 cut(s) 883
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 81
Eco52I CGGCCG 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 883
Eco91I GGTNACC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 883
EcoO65I GGTNACC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 1007
EcoRII CCWGG 2 cut(s) 345, 373
EcoT14I CCWWGG 1 cut(s) 801
EcoT22I ATGCAT 1 cut(s) 1088
EcoT38I GRGCYC 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 5 cut(s) 509, 617, 710, 913, 1153
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 4 cut(s) 176, 337, 516, 717
FatI CATG 5 cut(s) 505, 613, 706, 909, 1149
FbaI TGATCA 3 cut(s) 16, 589, 1126
Fnu4HI GCNGC 5 cut(s) 190, 338, 351, 408, 822
FokI GGATG 5 cut(s) 211, 738, 1008, 1095, 1175
FriOI GRGCYC 1 cut(s) 885
Fsp4HI GCNGC 5 cut(s) 190, 338, 351, 408, 822
GlaI GCGC 2 cut(s) 354, 950
GluI GCNGC 5 cut(s) 190, 338, 351, 408, 822
GsuI CTGGAG 1 cut(s) 1023
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 306, 634, 869
HapII CCGG 1 cut(s) 186
HhaI GCGC 2 cut(s) 355, 951
Hin1II CATG 5 cut(s) 509, 617, 710, 913, 1153
Hin6I GCGC 2 cut(s) 353, 949
HinP1I GCGC 2 cut(s) 353, 949
HincII GTYRAC 1 cut(s) 1197
HindII GTYRAC 1 cut(s) 1197
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 1 cut(s) 1016
HpaII CCGG 1 cut(s) 186
HphI GGTGA 7 cut(s) 84, 134, 190, 211, 488, 538, 583
Hpy166II GTNNAC 4 cut(s) 301, 529, 788, 1197
Hpy188I TCNGA 4 cut(s) 21, 279, 561, 880
Hpy188III TCNNGA 6 cut(s) 113, 431, 614, 662, 736, 1002
Hpy8I GTNNAC 4 cut(s) 301, 529, 788, 1197
HpyAV CCTTC 2 cut(s) 493, 733
HpyCH4III ACNGT 4 cut(s) 54, 103, 144, 283
HpyCH4V TGCA 6 cut(s) 35, 824, 864, 1047, 1086, 1096
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 359, 479, 653, 1150, 1155
HpyF3I CTNAG 8 cut(s) 384, 756, 782, 810, 879, 932, 1145, 1154
Hsp92II CATG 5 cut(s) 509, 617, 710, 913, 1153
HspAI GCGC 2 cut(s) 353, 949
Ksp22I TGATCA 3 cut(s) 16, 589, 1126
Kzo9I GATC 5 cut(s) 16, 180, 390, 589, 1126
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 4 cut(s) 241, 335, 415, 661
Lsp1109I GCAGC 3 cut(s) 201, 349, 808
LweI GCATC 3 cut(s) 469, 1073, 1095
MaeIII GTNAC 2 cut(s) 122, 308
MalI GATC 5 cut(s) 18, 182, 392, 591, 1128
MbiI CCGCTC 1 cut(s) 410
MboI GATC 5 cut(s) 16, 180, 390, 589, 1126
MboII GAAGA 6 cut(s) 279, 680, 772, 877, 1064, 1113
MhlI GDGCHC 2 cut(s) 885, 897
MluCI AATT 5 cut(s) 248, 770, 859, 957, 1007
Mph1103I ATGCAT 1 cut(s) 1088
MseI TTAA 4 cut(s) 830, 1139, 1203, 1225
MslI CAYNNNNRTG 4 cut(s) 317, 521, 1033, 1091
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 347, 375
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 2 cut(s) 347, 375
MwoI GCNNNNNNNGC 6 cut(s) 210, 359, 479, 653, 1150, 1155
NdeII GATC 5 cut(s) 16, 180, 390, 589, 1126
NlaIII CATG 5 cut(s) 509, 617, 710, 913, 1153
NlaIV GGNNCC 4 cut(s) 10, 243, 331, 715
NmuCI GTSAC 2 cut(s) 122, 308
NsiI ATGCAT 1 cut(s) 1088
NspI RCATGY 2 cut(s) 710, 1153
NspV TTCGAA 1 cut(s) 138
PaeI GCATGC 1 cut(s) 1153
PagI TCATGA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 890
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 1016
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 1183
PkrI GCNGC 5 cut(s) 191, 339, 352, 409, 823
PshAI GACNNNNGTC 1 cut(s) 306
PsiI TTATAA 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 345, 373
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 2 cut(s) 345, 373
PspN4I GGNNCC 4 cut(s) 10, 243, 331, 715
PspPI GGNCC 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 6 cut(s) 146, 172, 553, 680, 787, 989
RsaNI GTAC 6 cut(s) 145, 171, 552, 679, 786, 988
RseI CAYNNNNRTG 4 cut(s) 317, 521, 1033, 1091
SacI GAGCTC 1 cut(s) 885
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 4 cut(s) 830, 1139, 1203, 1225
SatI GCNGC 5 cut(s) 190, 338, 351, 408, 822
Sau3AI GATC 5 cut(s) 16, 180, 390, 589, 1126
Sau96I GGNCC 1 cut(s) 81
ScaI AGTACT 1 cut(s) 989
ScrFI CCNGG 2 cut(s) 347, 375
SduI GDGCHC 2 cut(s) 885, 897
SfaNI GCATC 3 cut(s) 469, 1073, 1095
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 4 cut(s) 317, 521, 1033, 1091
SphI GCATGC 1 cut(s) 1153
Sse9I AATT 5 cut(s) 248, 770, 859, 957, 1007
SsiI CCGC 3 cut(s) 260, 350, 408
SstI GAGCTC 1 cut(s) 885
StyD4I CCNGG 2 cut(s) 345, 373
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 4 cut(s) 54, 103, 144, 283
TaqI TCGA 5 cut(s) 114, 138, 663, 945, 1173
TasI AATT 5 cut(s) 248, 770, 859, 957, 1007
TatI WGTACW 3 cut(s) 678, 785, 987
TauI GCSGC 2 cut(s) 353, 410
TfiI GAWTC 1 cut(s) 1016
Tru1I TTAA 4 cut(s) 830, 1139, 1203, 1225
Tru9I TTAA 4 cut(s) 830, 1139, 1203, 1225
TscAI CASTG 7 cut(s) 19, 106, 200, 400, 649, 902, 958
TseFI GTSAC 2 cut(s) 122, 308
TseI GCWGC 3 cut(s) 189, 337, 821
Tsp45I GTSAC 2 cut(s) 122, 308
TspDTI ATGAA 4 cut(s) 263, 602, 681, 1029
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 7 cut(s) 19, 106, 200, 400, 649, 902, 958
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 1183
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 4 cut(s) 248, 770, 957, 1007
XceI RCATGY 2 cut(s) 710, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 1032
ZrmI AGTACT 1 cut(s) 989
Zsp2I ATGCAT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.