Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012808

Physical Location & Seq

Genomic Coordinates Forward (+)

61009517 .. 61012294

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0456700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTATCCTCTTCTTCTCCTCCAAGCTCTCATCTTTTGTTGACTCACTGTTTTAAGACTCCCAACCTTTCTCATCATCAGTGTAAGCGGCAGAAAAGATGGGCCAATGGGTCACAGAGAGCTTCTAAAGTTGTTGCTTACTATGGCTTGAAGGAACCACCTTATAAACTTGATGCTTTGGAACCCTATATGAGTCAGAGGACATTGGAGGTTCATTGGGGAGGCCATCATCGTAACTACTTGGAAGGTTTGAACAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCCTTACCTGAATTTAACAACGCTGCCCAGGTCTGGAATCACGACTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCCAAACTAGGAGTACTTGAGCAGATTGAAAAGGATTTTGGTTCCTATACAAGTTTCAGAGAGAAGTTTATAGAGGCAGCACTAACTCTATTTGGCTCAGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACAACTCAAGATAGTTAGAACTTCAAATGCCATTTGCCCACTTGTCTGGGATGACATACCGATAATCTGTTTGGATATGTGGGAGCATGCTTATTATCTGGATTACAAGAATGAGAGAGGAAAGTATGTGGATGCATTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGTGCGCATGGCCCGTGCTGAGGCGTTTGTGAATTTAGGCGAACCTAATATCCCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

261

Amino Acids

30.16

Weight (kDa)

6.8

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	48 - 132	5.2e-18	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	144 - 240	2.5e-35	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45780 AT5G45780
fragaria_vesca	FvH4_3g07470 FvH4_3g07470 FvH4_3g07470
malus_domestica	MD05G1297400.v1.1 MD10G1277100.v1.1
prunus_persica	Prupe.4G064800_v2.0.a1
pyrus_communis	pycom05g27550 pycom10g23140
rosa_chinensis	RchiOBHm_Chr5g0011381
rosa_laevigata	RLG00000031828
rosa_multiflora	Rmu_sc0009975.1_g000012
rosa_roxburghii	Rroxscaffold_1G00065070
rosa_rugosa	Rorug04G0456700
rosa_samantha	Rh5BG083400 Rh5DG083300
rosa_wichuraiana	Rw5G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
Acc16I	TGCGCA	1 cut(s)	728
AciI	CCGC	2 cut(s)	88, 716
AcsI	RAATTY	2 cut(s)	344, 754
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	4 cut(s)	366, 407, 425, 742
AgsI	TTSAA	4 cut(s)	151, 253, 446, 576
AjnI	CCWGG	2 cut(s)	360, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AloI	GAACNNNNNNTCC	1 cut(s)	756
AluBI	AGCT	3 cut(s)	27, 122, 262
AluI	AGCT	3 cut(s)	27, 122, 262
Alw26I	GTCTC	1 cut(s)	544
AoxI	GGCC	3 cut(s)	102, 223, 732
ApeKI	GCWGC	2 cut(s)	356, 494
ApoI	RAATTY	2 cut(s)	344, 754
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	2 cut(s)	102, 733
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	343, 506
BccI	CCATC	3 cut(s)	93, 234, 705
BciT130I	CCWGG	2 cut(s)	362, 402
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	263, 425
BisI	GCNGC	4 cut(s)	89, 357, 495, 717
BlsI	GCNGC	4 cut(s)	90, 358, 496, 718
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	362, 402
BmgT120I	GGNCC	2 cut(s)	102, 733
BmiI	GGNNCC	3 cut(s)	156, 183, 460
BmrFI	CCNGG	2 cut(s)	362, 402
BmsI	GCATC	2 cut(s)	163, 673
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	2 cut(s)	514, 741
BpuEI	CTTGAG	2 cut(s)	455, 542
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	4 cut(s)	366, 407, 425, 742
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	362, 402
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	2 cut(s)	607, 688
BseLI	CCNNNNNNNGG	4 cut(s)	366, 407, 425, 742
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	528, 732
BseRI	GAGGAG	2 cut(s)	9, 420
BseXI	GCAGC	2 cut(s)	343, 506
BseYI	CCCAGC	1 cut(s)	519
BshFI	GGCC	3 cut(s)	104, 225, 734
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	366, 407, 425, 742
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	104, 225, 734
BspACI	CCGC	2 cut(s)	88, 716
BspANI	GGCC	3 cut(s)	104, 225, 734
BspCNI	CTCAG	2 cut(s)	527, 733
BspLI	GGNNCC	3 cut(s)	156, 183, 460
BsrDI	GCAATG	1 cut(s)	726
BssECI	CCNNGG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	362, 402
Bst4CI	ACNGT	2 cut(s)	50, 282
Bst6I	CTCTTC	3 cut(s)	16, 263, 540
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	514, 741
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	607, 688
BstHHI	GCGC	1 cut(s)	729
BstMAI	GTCTC	1 cut(s)	544
BstNI	CCWGG	2 cut(s)	362, 402
BstNSI	RCATGY	2 cut(s)	418, 641
BstSCI	CCNGG	2 cut(s)	360, 400
BstV1I	GCAGC	2 cut(s)	343, 506
BstXI	CCANNNNNNTGG	1 cut(s)	597
BsuRI	GGCC	3 cut(s)	104, 225, 734
BtsCI	GGATG	2 cut(s)	607, 688
BtsIMutI	CAGTG	2 cut(s)	46, 86
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	2 cut(s)	102, 733
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	4 cut(s)	394, 415, 638, 730
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	2 cut(s)	514, 741
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	16, 263, 540
EarI	CTCTTC	3 cut(s)	16, 263, 540
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	360, 400
EcoT22I	ATGCAT	1 cut(s)	688
FaeI	CATG	4 cut(s)	397, 418, 641, 733
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	393, 414, 637, 729
Fnu4HI	GCNGC	4 cut(s)	89, 357, 495, 717
FokI	GGATG	2 cut(s)	614, 695
Fsp4HI	GCNGC	4 cut(s)	89, 357, 495, 717
FspAI	RTGCGCAY	1 cut(s)	728
FspBI	CTAG	2 cut(s)	263, 425
FspI	TGCGCA	1 cut(s)	728
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	4 cut(s)	89, 357, 495, 717
GsaI	CCCAGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	104, 225, 734
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	4 cut(s)	397, 418, 641, 733
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	6 cut(s)	43, 58, 193, 331, 370, 389
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	198, 476
Hpy188III	TCNNGA	4 cut(s)	367, 374, 559, 650
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	145, 239
HpyCH4III	ACNGT	2 cut(s)	50, 282
HpyCH4V	TGCA	2 cut(s)	397, 686
HpyF3I	CTNAG	2 cut(s)	514, 741
Hsp92II	CATG	4 cut(s)	397, 418, 641, 733
HspAI	GCGC	1 cut(s)	727
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	2 cut(s)	343, 506
LweI	GCATC	2 cut(s)	163, 673
MaeI	CTAG	2 cut(s)	263, 425
MaeIII	GTNAC	3 cut(s)	111, 233, 272
MboII	GAAGA	4 cut(s)	3, 6, 280, 557
MluCI	AATT	2 cut(s)	344, 754
MlyI	GAGTC	3 cut(s)	37, 52, 202
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	3 cut(s)	54, 348, 536
MspR9I	CCNGG	2 cut(s)	362, 402
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	2 cut(s)	362, 402
NlaIII	CATG	4 cut(s)	397, 418, 641, 733
NlaIV	GGNNCC	3 cut(s)	156, 183, 460
NmuCI	GTSAC	2 cut(s)	111, 272
NsbI	TGCGCA	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	2 cut(s)	418, 641
PaeI	GCATGC	1 cut(s)	641
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	331, 370, 389
PkrI	GCNGC	4 cut(s)	90, 358, 496, 718
PleI	GAGTC	3 cut(s)	37, 52, 201
PpsI	GAGTC	3 cut(s)	37, 52, 201
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	360, 400
PspFI	CCCAGC	1 cut(s)	519
PspGI	CCWGG	2 cut(s)	360, 400
PspN4I	GGNNCC	3 cut(s)	156, 183, 460
PspPI	GGNCC	2 cut(s)	102, 733
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	54, 348, 536
SatI	GCNGC	4 cut(s)	89, 357, 495, 717
Sau96I	GGNCC	2 cut(s)	102, 733
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	3 cut(s)	37, 52, 202
ScrFI	CCNGG	2 cut(s)	362, 402
SfaNI	GCATC	2 cut(s)	163, 673
SmlI	CTYRAG	2 cut(s)	434, 557
SmoI	CTYRAG	2 cut(s)	434, 557
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	2 cut(s)	344, 754
SsiI	CCGC	2 cut(s)	88, 716
SspMI	CTAG	2 cut(s)	263, 425
StyD4I	CCNGG	2 cut(s)	360, 400
TaaI	ACNGT	2 cut(s)	50, 282
TasI	AATT	2 cut(s)	344, 754
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	2 cut(s)	91, 719
TfiI	GAWTC	3 cut(s)	331, 370, 389
Tru1I	TTAA	3 cut(s)	54, 348, 536
Tru9I	TTAA	3 cut(s)	54, 348, 536
TscAI	CASTG	2 cut(s)	53, 86
TseFI	GTSAC	2 cut(s)	111, 272
TseI	GCWGC	2 cut(s)	356, 494
Tsp45I	GTSAC	2 cut(s)	111, 272
TspDTI	ATGAA	3 cut(s)	203, 315, 707
TspRI	CASTG	2 cut(s)	53, 86
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	344, 754
XceI	RCATGY	2 cut(s)	418, 641
XspI	CTAG	2 cut(s)	263, 425
ZrmI	AGTACT	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.