Rorug05G0076000

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
6548309 .. 6550611
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0076000.1

Sequence Viewer

Length: 1092 bp
ATGAAGCTGTTTATCCTGCTTGCTTATTTGTGCTTGACTTTGCACATAGTCTCATCAAGTCTTCAACAGTATCAAGCAATATTCAACTTCGGTGACTCCCTCAGTGACACCGGAAATTTCCTTCTCTCTCATCCCCGCGCACCCCCAGACGTCATTGGTAAGCTACCTTATGGAGAGACCTTTTTTCACCACGCAACCGGCCGGTTCTCCGATGGCCGCCTTATTGTTGACTTCATCGCTGAGGCATCTGGATTGCCGCATTTACCACCATATTTAGCCCTAAAGAAAGGCCAAAACTTTTACCAAGGAGTAAACTTTGCTGTTGCTGGAGCCACTGCACTTGACCCTGAATTCTTCTACCGAAGGAAAATGGCATCGATTCTGGCCACAAACTACTCCTTGAGCACTCAGCTTGGTTGGTTCAAGGAGCTCAAGCCCTCACTCTGCAACACCAAACAAGAATGTGAGAACTACTTCAAGAAGGCTCTGTTTCTGGTGGGGGAGATGGGTGGAAACGATTACAACTACGCCTTCTTTGTTGGTGGGAGCATTAAACAGCTCAAAGCCTCGGTGCCTCTTGTTGTGGATGCAATTACCAAGGCCACCGGTGCATTGATAGAGGAAGGAGCAGTGGAGCTAGTGGTGCCTGGAAATTTGCCAATTGGGTGCTCAGCCGTCTACTTGACTCTGTATGGAGGCCCTAACAAAGCTTATTATGATAAACGAAATGGGTGTTTGAAGGCGTTCAATGCTTTTGCCAAGCACCATAACAAAGAGCTCAAACGTGCCCTAGGGACACTAGAAGAAAAATACCCTCATGCAAGGATCATATATGCTGACTACTATGGTGCTTCCATGCCTTTTTATCATGCCCCTCAACATTATGGGTTCACAAGTGGAAGTCTAGCAGCTTGTTGCGGAGGAGGAGGACCATACAACTTCAACAATTCGGCATGGTGTGGACATATTGGTTCTAAGGCTTGCAAAGATCCATCGTCATATGCAAATTGGGATGGACTTCACTTAACAGAAGCAGCTTATAGCCACATTGCCAAGGGTTTGATCCATGGAAATTTCACCGCACCCATCTAG

Protein Analysis

363

Amino Acids

39.71

Weight (kDa)

8.57

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 27 - 353 1.1e-32 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccB1I GGYRCC 2 cut(s) 571, 643
AccI GTMKAC 1 cut(s) 678
AccII CGCG 1 cut(s) 138
AciI CCGC 5 cut(s) 136, 217, 257, 918, 1080
AclWI GGATC 3 cut(s) 833, 983, 1057
AcoI YGGCCR 3 cut(s) 199, 214, 384
AcsI RAATTY 4 cut(s) 115, 350, 652, 1072
AcyI GRCGYC 1 cut(s) 150
AgeI ACCGGT 1 cut(s) 605
AgsI TTSAA 7 cut(s) 65, 85, 424, 478, 739, 748, 943
AjnI CCWGG 1 cut(s) 646
Alw21I GWGCWC 4 cut(s) 407, 432, 671, 780
Alw26I GTCTC 2 cut(s) 55, 170
AlwI GGATC 3 cut(s) 833, 983, 1057
AoxI GGCC 6 cut(s) 199, 214, 289, 384, 600, 697
ApeKI GCWGC 2 cut(s) 908, 1034
ApoI RAATTY 4 cut(s) 115, 350, 652, 1072
AsiGI ACCGGT 1 cut(s) 605
Asp700I GAANNNNTTC 2 cut(s) 473, 743
AspA2I CCTAGG 1 cut(s) 790
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 698, 929
AsuHPI GGTGA 3 cut(s) 104, 179, 1069
AvaII GGWCC 1 cut(s) 929
AvrII CCTAGG 1 cut(s) 790
BaeGI GKGCMC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 2 cut(s) 571, 643
BanII GRGCYC 2 cut(s) 432, 780
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 4 cut(s) 407, 432, 671, 780
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 920, 1046
BccI CCATC 4 cut(s) 206, 499, 1000, 1007
BceAI ACGGC 1 cut(s) 659
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 2 cut(s) 55, 170
BfaI CTAG 5 cut(s) 638, 791, 800, 905, 1090
BisI GCNGC 4 cut(s) 217, 257, 909, 1035
BlnI CCTAGG 1 cut(s) 790
BlpI GCTNAGC 1 cut(s) 670
BlsI GCNGC 4 cut(s) 218, 258, 910, 1036
Bme1390I CCNGG 1 cut(s) 648
Bme18I GGWCC 1 cut(s) 929
BmgT120I GGNCC 2 cut(s) 698, 929
BmiI GGNNCC 3 cut(s) 331, 573, 645
BmrFI CCNGG 1 cut(s) 648
BmsI GCATC 3 cut(s) 254, 383, 577
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 670
BpuEI CTTGAG 2 cut(s) 416, 421
Bsa29I ATCGAT 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 6 cut(s) 304, 567, 597, 790, 1053, 1066
BsaWI WCCGGW 2 cut(s) 110, 605
Bse118I RCCGGY 3 cut(s) 197, 201, 605
Bse3DI GCAATG 1 cut(s) 1047
BseBI CCWGG 1 cut(s) 648
BseCI ATCGAT 1 cut(s) 377
BseDI CCNNGG 6 cut(s) 304, 567, 597, 790, 1053, 1066
BseGI GGATG 3 cut(s) 130, 592, 1018
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 4 cut(s) 115, 231, 422, 684
BseRI GAGGAG 2 cut(s) 936, 939
BseSI GKGCMC 1 cut(s) 790
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 920, 1046
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 6 cut(s) 201, 216, 291, 386, 602, 699
BshNI GGYRCC 2 cut(s) 571, 643
BshTI ACCGGT 1 cut(s) 605
BshVI ATCGAT 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 4 cut(s) 407, 432, 671, 780
BsiSI CCGG 4 cut(s) 111, 198, 202, 606
BslFI GGGAC 1 cut(s) 808
BsmAI GTCTC 2 cut(s) 55, 170
BsmFI GGGAC 1 cut(s) 808
BsnI GGCC 6 cut(s) 201, 216, 291, 386, 602, 699
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 5 cut(s) 407, 432, 671, 780, 790
Bsp143I GATC 3 cut(s) 825, 988, 1062
Bsp1720I GCTNAGC 1 cut(s) 670
Bsp19I CCATGG 1 cut(s) 1066
BspACI CCGC 5 cut(s) 136, 217, 257, 918, 1080
BspANI GGCC 6 cut(s) 201, 216, 291, 386, 602, 699
BspCNI CTCAG 4 cut(s) 114, 232, 421, 683
BspDI ATCGAT 1 cut(s) 377
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 331, 573, 645
BspPI GGATC 3 cut(s) 833, 983, 1057
BspT107I GGYRCC 2 cut(s) 571, 643
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 3 cut(s) 197, 201, 605
BssAI RCCGGY 3 cut(s) 197, 201, 605
BssECI CCNNGG 6 cut(s) 304, 567, 597, 790, 1053, 1066
BssMI GATC 3 cut(s) 825, 988, 1062
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 5 cut(s) 304, 597, 790, 1053, 1066
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 21, 982
BstDEI CTNAG 5 cut(s) 101, 240, 408, 670, 975
BstDSI CCRYGG 1 cut(s) 1066
BstF5I GGATG 3 cut(s) 130, 592, 1018
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 3 cut(s) 828, 991, 1065
BstMAI GTCTC 2 cut(s) 55, 170
BstMBI GATC 3 cut(s) 825, 988, 1062
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 608, 643, 749
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 646
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 920, 1046
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 988
BstYI RGATCY 1 cut(s) 988
BstZI CGGCCG 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 377
BsuRI GGCC 6 cut(s) 201, 216, 291, 386, 602, 699
BsuTUI ATCGAT 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 1066
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 130, 592, 1018
BtsI GCAGTG 2 cut(s) 333, 636
BtsIMutI CAGTG 3 cut(s) 109, 333, 636
Cac8I GCNNGC 2 cut(s) 21, 982
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 3 cut(s) 197, 201, 605
Cfr13I GGNCC 2 cut(s) 698, 929
ClaI ATCGAT 1 cut(s) 377
CspAI ACCGGT 1 cut(s) 605
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 5 cut(s) 818, 856, 869, 954, 1067
DdeI CTNAG 5 cut(s) 101, 240, 408, 670, 975
DpnI GATC 3 cut(s) 827, 990, 1064
DpnII GATC 3 cut(s) 825, 988, 1062
EaeI YGGCCR 3 cut(s) 199, 214, 384
EagI CGGCCG 1 cut(s) 199
Ecl136II GAGCTC 2 cut(s) 430, 778
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 5 cut(s) 304, 597, 790, 1053, 1066
Eco24I GRGCYC 2 cut(s) 432, 780
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 929
Eco52I CGGCCG 1 cut(s) 199
Eco53kI GAGCTC 2 cut(s) 430, 778
EcoICRI GAGCTC 2 cut(s) 430, 778
EcoO109I RGGNCCY 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 5 cut(s) 304, 597, 790, 1053, 1066
EcoT38I GRGCYC 2 cut(s) 432, 780
ErhI CCWWGG 5 cut(s) 304, 597, 790, 1053, 1066
FaeI CATG 5 cut(s) 821, 859, 872, 957, 1070
FaqI GGGAC 1 cut(s) 808
FatI CATG 5 cut(s) 817, 855, 868, 953, 1066
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 1000
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 4 cut(s) 217, 257, 909, 1035
FokI GGATG 3 cut(s) 117, 599, 1025
FriOI GRGCYC 2 cut(s) 432, 780
Fsp4HI GCNGC 4 cut(s) 217, 257, 909, 1035
FspBI CTAG 5 cut(s) 638, 791, 800, 905, 1090
GlaI GCGC 1 cut(s) 139
GluI GCNGC 4 cut(s) 217, 257, 909, 1035
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 6 cut(s) 201, 216, 291, 386, 602, 699
HapII CCGG 4 cut(s) 111, 198, 202, 606
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 5 cut(s) 821, 859, 872, 957, 1070
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 3 cut(s) 95, 379, 685
HpaII CCGG 4 cut(s) 111, 198, 202, 606
HphI GGTGA 3 cut(s) 104, 179, 1069
Hpy166II GTNNAC 5 cut(s) 229, 313, 679, 891, 962
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 249, 478
Hpy8I GTNNAC 5 cut(s) 229, 313, 679, 891, 962
HpyAV CCTTC 6 cut(s) 131, 357, 475, 541, 617, 733
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 2 cut(s) 150, 784
HpyCH4V TGCA 8 cut(s) 43, 338, 447, 590, 611, 821, 984, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 608, 643, 749
HpyF3I CTNAG 5 cut(s) 101, 240, 408, 670, 975
HpySE526I ACGT 2 cut(s) 150, 784
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 5 cut(s) 821, 859, 872, 957, 1070
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 3 cut(s) 825, 988, 1062
LmnI GCTCC 5 cut(s) 329, 427, 546, 626, 634
Lsp1109I GCAGC 2 cut(s) 920, 1046
LweI GCATC 3 cut(s) 254, 383, 577
MaeI CTAG 5 cut(s) 638, 791, 800, 905, 1090
MaeII ACGT 2 cut(s) 150, 784
MaeIII GTNAC 2 cut(s) 92, 104
MalI GATC 3 cut(s) 827, 990, 1064
MboI GATC 3 cut(s) 825, 988, 1062
MboII GAAGA 3 cut(s) 53, 346, 815
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 5 cut(s) 407, 432, 671, 780, 790
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 8 cut(s) 115, 350, 591, 652, 660, 946, 1006, 1072
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 2 cut(s) 89, 679
Mox20I TGGCCA 1 cut(s) 386
MroXI GAANNNNTTC 2 cut(s) 473, 743
MscI TGGCCA 1 cut(s) 386
MseI TTAA 2 cut(s) 552, 1025
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 4 cut(s) 111, 198, 202, 606
MspR9I CCNGG 1 cut(s) 648
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 608, 643, 749
NcoI CCATGG 1 cut(s) 1066
NdeI CATATG 1 cut(s) 1000
NdeII GATC 3 cut(s) 825, 988, 1062
NlaIII CATG 5 cut(s) 821, 859, 872, 957, 1070
NlaIV GGNNCC 3 cut(s) 331, 573, 645
NmuCI GTSAC 2 cut(s) 92, 104
PdmI GAANNNNTTC 2 cut(s) 473, 743
PfeI GAWTC 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 605
PkrI GCNGC 4 cut(s) 218, 258, 910, 1036
PleI GAGTC 2 cut(s) 89, 679
PpsI GAGTC 2 cut(s) 89, 679
Psp124BI GAGCTC 2 cut(s) 432, 780
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 3 cut(s) 331, 573, 645
PspPI GGNCC 2 cut(s) 698, 929
PsuI RGATCY 1 cut(s) 988
SacI GAGCTC 2 cut(s) 432, 780
SaqAI TTAA 2 cut(s) 552, 1025
SatI GCNGC 4 cut(s) 217, 257, 909, 1035
Sau3AI GATC 3 cut(s) 825, 988, 1062
Sau96I GGNCC 2 cut(s) 698, 929
SchI GAGTC 2 cut(s) 89, 679
ScrFI CCNGG 1 cut(s) 648
SduI GDGCHC 5 cut(s) 407, 432, 671, 780, 790
SfaNI GCATC 3 cut(s) 254, 383, 577
SgrAI CRCCGGYG 1 cut(s) 605
SinI GGWCC 1 cut(s) 929
SmlI CTYRAG 2 cut(s) 400, 431
SmoI CTYRAG 2 cut(s) 400, 431
Sse9I AATT 8 cut(s) 115, 350, 591, 652, 660, 946, 1006, 1072
SsiI CCGC 5 cut(s) 136, 217, 257, 918, 1080
SspI AATATT 1 cut(s) 81
SspMI CTAG 5 cut(s) 638, 791, 800, 905, 1090
SstI GAGCTC 2 cut(s) 432, 780
StyD4I CCNGG 1 cut(s) 646
StyI CCWWGG 5 cut(s) 304, 597, 790, 1053, 1066
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 2 cut(s) 153, 787
TaqI TCGA 1 cut(s) 377
TasI AATT 8 cut(s) 115, 350, 591, 652, 660, 946, 1006, 1072
TauI GCSGC 2 cut(s) 219, 259
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 552, 1025
Tru9I TTAA 2 cut(s) 552, 1025
TscAI CASTG 3 cut(s) 109, 340, 636
TseFI GTSAC 2 cut(s) 92, 104
TseI GCWGC 2 cut(s) 908, 1034
Tsp45I GTSAC 2 cut(s) 92, 104
TspDTI ATGAA 2 cut(s) 17, 223
TspRI CASTG 3 cut(s) 109, 340, 636
VpaK11BI GGWCC 1 cut(s) 929
XapI RAATTY 4 cut(s) 115, 350, 652, 1072
XmaJI CCTAGG 1 cut(s) 790
XmiI GTMKAC 1 cut(s) 678
XmnI GAANNNNTTC 2 cut(s) 473, 743
XspI CTAG 5 cut(s) 638, 791, 800, 905, 1090
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.