Rorug05G0076200

UPF0678 fatty acid-binding protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006891
Physical Location & Seq
Reverse (-)
6551400 .. 6553292
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0076200.1

Sequence Viewer

Length: 1308 bp
ATGCATTCTAAGTATTTTCGAGGAGTGTATATAAAGAAGGCGGTAAGACTCATCATCCAAACAAGAATGTTTGGTCACAAGAAAAAGATGGATAACATTATTGGCAAGCACAGCATTGCGAAAAGATGGAAGAAACTAAGCGGCGAAGACAACTGGGAAGGCATGTTGGATCCTCTCGACATTGATCTTCGAAAGTATATAATTCACTATGGCGAAATGGCTCAATCTACATATGATGCTTTCAACACAGAGAGGGCATCAAAGTTTGCAGGAAGCAGCAGGTATGCCAGGAAGACCTTCTTCTCCAAAGTTGGTTTAGAGAAGGGCAATGAATTTAGGTACAACGTGACCAAGTTTGTGTATGCAACTTCACAGATTCAAGTCCCGGAAGCATTTATCGTTAAGTCTTTGTCAAGGGAGGCTTGGAGCAAAGAATCAAATTGGATGGGGTATGTTGCTGTGGCCACAGATGAGGGGAAGGCTGTGTTGGGCAGGAGGGACATTGTAATTGCTTGGAGAGGTACTATTCAGTCCTTGGAGTGGGTTAATGATTTGCAGTTCAATATGGTTTCTGTTTCAAAAATACTAGGTGAGGAGGCTGATGCTAAGGTGCACCAAGGTTGGTACTCCATCTATACTTCCGAAGATTGGCGTTCGCCTTACAACAAAACCAGTGCCAGAATTCAGGTTCTTGCTGAGGTGAGCAGACTAGTAGAGCAATACAAGGATGAGGAAATCAGCATAACCATAACAGGGCACAGTTTAGGAGCAGCAATTGCCACACTAAGTGCAATTGACATAGTTGCCAACGGTATCAACAAACCGAAAGACCAGACAACAAACAAACTCTCATCATGTCCAGTAACAGCCTTTGTCTTTGCTTGCCCTCGAGTCGGAGACTCAAACTTCAAGAAAGTCTTCTCTAGCTACAAAAACCTCCGAGTCCTGCGAGTTCGCAATGCACTCGATATTGTCCCCAAATATCCGTTTCTAGGAGGCTATTCCGAGGTGGGAGAAGAGCTGGGAATCGACACTCGAAAGTCGAGCTACTTGAAGAGCCCTGGAAGCGTGGTGAGTTGGCATAACATGGAGGGGCATTTGCATGGAGTTGCAGGAACTCAAGGGAGTAAAGGAGGGTTCAAGTTGGAAGTGAAGCGTGACATAGCATTGGTTAACAAAAGCAATGATGCTCTCAAGGAGGAGTATCTTGTGCCGGTTTCTTGGCGTTGTGAGAAGGACAAGGGGATGGTTCAAATGGATGATGGTTCTTGGCAGCTCATGGATCATGAGGAGGATTTTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

435

Amino Acids

49.29

Weight (kDa)

9.1

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 169 - 331 3.7e-38 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
AciI CCGC 2 cut(s) 41, 141
AclWI GGATC 3 cut(s) 164, 177, 1290
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 332, 681
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 3 cut(s) 341, 523, 626
AfiI CCNNNNNNNGG 5 cut(s) 540, 648, 753, 893, 992
AgsI TTSAA 8 cut(s) 244, 380, 562, 579, 910, 1054, 1141, 1253
AhlI ACTAGT 1 cut(s) 709
AjnI CCWGG 2 cut(s) 287, 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 4 cut(s) 927, 1021, 1047, 1276
AluI AGCT 4 cut(s) 927, 1021, 1047, 1276
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 1 cut(s) 891
Alw44I GTGCAC 1 cut(s) 611
AlwI GGATC 3 cut(s) 164, 177, 1290
Ama87I CYCGRG 1 cut(s) 888
AoxI GGCC 1 cut(s) 462
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 3 cut(s) 276, 770, 1273
ApoI RAATTY 2 cut(s) 332, 681
Asp700I GAANNNNTTC 2 cut(s) 296, 917
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 602, 712, 1084
AsuII TTCGAA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 888
BaeGI GKGCMC 2 cut(s) 615, 759
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 1061
BbsI GAAGAC 3 cut(s) 153, 299, 910
Bbv12I GWGCWC 1 cut(s) 615
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 3 cut(s) 288, 782, 1285
BccI CCATC 6 cut(s) 82, 120, 439, 638, 1240, 1256
BcgI CGANNNNNNTGC 2 cut(s) 946, 980
BciT130I CCWGG 2 cut(s) 289, 1062
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 891
BcuI ACTAGT 1 cut(s) 709
BfaI CTAG 4 cut(s) 587, 710, 924, 992
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 4 cut(s) 142, 277, 771, 1274
BlsI GCNGC 4 cut(s) 143, 278, 772, 1275
Bme1390I CCNGG 3 cut(s) 289, 386, 1062
BmeT110I CYCGRG 1 cut(s) 888
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 289, 386, 1062
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 4 cut(s) 226, 266, 592, 1177
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 3 cut(s) 153, 299, 910
Bpu10I CCTNAGC 2 cut(s) 606, 696
Bpu14I TTCGAA 1 cut(s) 190
BpuEI CTTGAG 2 cut(s) 1104, 1178
BpuMI CCSGG 1 cut(s) 386
BsaJI CCNNGG 4 cut(s) 534, 616, 1005, 1060
Bsc4I CCNNNNNNNGG 5 cut(s) 540, 648, 753, 893, 992
Bse118I RCCGGY 1 cut(s) 1213
Bse1I ACTGG 3 cut(s) 158, 672, 860
Bse3DI GCAATG 4 cut(s) 114, 334, 964, 1189
BseBI CCWGG 2 cut(s) 289, 1062
BseDI CCNNGG 4 cut(s) 534, 616, 1005, 1060
BseGI GGATG 5 cut(s) 54, 450, 733, 1251, 1264
BseLI CCNNNNNNNGG 5 cut(s) 540, 648, 753, 893, 992
BseMI GCAATG 4 cut(s) 114, 334, 964, 1189
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 3 cut(s) 158, 672, 860
BseRI GAGGAG 4 cut(s) 36, 608, 1214, 1304
BseSI GKGCMC 2 cut(s) 615, 759
BseXI GCAGC 3 cut(s) 288, 782, 1285
BseYI CCCAGC 1 cut(s) 1021
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 615
BsiHKCI CYCGRG 1 cut(s) 888
BsiSI CCGG 2 cut(s) 386, 1214
BslFI GGGAC 3 cut(s) 368, 512, 959
BslI CCNNNNNNNGG 5 cut(s) 540, 648, 753, 893, 992
BsmAI GTCTC 1 cut(s) 891
BsmFI GGGAC 3 cut(s) 368, 512, 959
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 888
Bsp119I TTCGAA 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 615, 759, 1061
Bsp143I GATC 3 cut(s) 169, 184, 1282
BspACI CCGC 2 cut(s) 41, 141
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 1 cut(s) 688
BspHI TCATGA 1 cut(s) 1285
BspLI GGNNCC 1 cut(s) 171
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 164, 177, 1290
BspQI GCTCTTC 2 cut(s) 1011, 1049
BspT104I TTCGAA 1 cut(s) 190
BsrDI GCAATG 4 cut(s) 114, 334, 964, 1189
BsrFI RCCGGY 1 cut(s) 1213
BsrI ACTGG 3 cut(s) 158, 672, 860
BssAI RCCGGY 1 cut(s) 1213
BssECI CCNNGG 4 cut(s) 534, 616, 1005, 1060
BssMI GATC 3 cut(s) 169, 184, 1282
BssT1I CCWWGG 2 cut(s) 534, 616
Bst2UI CCWGG 2 cut(s) 289, 1062
Bst4CI ACNGT 2 cut(s) 761, 812
Bst6I CTCTTC 2 cut(s) 1011, 1049
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 107, 883
BstDEI CTNAG 5 cut(s) 9, 137, 606, 696, 785
BstF5I GGATG 5 cut(s) 54, 450, 733, 1251, 1264
BstKTI GATC 3 cut(s) 172, 187, 1285
BstMAI GTCTC 1 cut(s) 891
BstMBI GATC 3 cut(s) 169, 184, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 111, 776, 1065
BstNI CCWGG 2 cut(s) 289, 1062
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 3 cut(s) 287, 384, 1060
BstSLI GKGCMC 2 cut(s) 615, 759
BstV1I GCAGC 3 cut(s) 288, 782, 1285
BstV2I GAAGAC 3 cut(s) 153, 299, 910
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 1 cut(s) 464
BtsCI GGATG 5 cut(s) 54, 450, 733, 1251, 1264
BtsIMutI CAGTG 1 cut(s) 679
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 107, 883
CciI TCATGA 1 cut(s) 1285
Cfr10I RCCGGY 1 cut(s) 1213
Csp6I GTAC 3 cut(s) 340, 522, 625
CviAII CATG 6 cut(s) 163, 855, 1087, 1103, 1279, 1286
CviQI GTAC 3 cut(s) 340, 522, 625
DdeI CTNAG 5 cut(s) 9, 137, 606, 696, 785
DpnI GATC 3 cut(s) 171, 186, 1284
DpnII GATC 3 cut(s) 169, 184, 1282
DraIII CACNNNGTG 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 1011, 1049
EarI CTCTTC 2 cut(s) 1011, 1049
Eco130I CCWWGG 2 cut(s) 534, 616
Eco24I GRGCYC 1 cut(s) 1061
Eco88I CYCGRG 1 cut(s) 888
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 2 cut(s) 287, 1060
EcoT14I CCWWGG 2 cut(s) 534, 616
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1061
ErhI CCWWGG 2 cut(s) 534, 616
FaeI CATG 6 cut(s) 166, 858, 1090, 1106, 1282, 1289
FalI AAGNNNNNCTT 6 cut(s) 284, 316, 406, 438, 902, 934
FaqI GGGAC 3 cut(s) 368, 512, 959
FatI CATG 6 cut(s) 162, 854, 1086, 1102, 1278, 1285
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 142, 277, 771, 1274
FokI GGATG 5 cut(s) 41, 457, 740, 1258, 1271
FriOI GRGCYC 1 cut(s) 1061
Fsp4HI GCNGC 4 cut(s) 142, 277, 771, 1274
FspBI CTAG 4 cut(s) 587, 710, 924, 992
GluI GCNGC 4 cut(s) 142, 277, 771, 1274
GsaI CCCAGC 1 cut(s) 1025
HaeIII GGCC 1 cut(s) 464
HapII CCGG 2 cut(s) 386, 1214
Hin1II CATG 6 cut(s) 166, 858, 1090, 1106, 1282, 1289
HincII GTYRAC 1 cut(s) 1174
HindII GTYRAC 1 cut(s) 1174
HinfI GANTC 8 cut(s) 48, 376, 434, 891, 899, 942, 1026, 1301
HpaI GTTAAC 1 cut(s) 1174
HpaII CCGG 2 cut(s) 386, 1214
HphI GGTGA 3 cut(s) 602, 712, 1084
Hpy166II GTNNAC 2 cut(s) 613, 1174
Hpy188I TCNGA 4 cut(s) 643, 896, 941, 1006
Hpy188III TCNNGA 4 cut(s) 176, 910, 1286, 1305
Hpy8I GTNNAC 2 cut(s) 613, 1174
HpyAV CCTTC 6 cut(s) 31, 152, 307, 316, 472, 1228
HpyCH4III ACNGT 2 cut(s) 761, 812
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 9 cut(s) 4, 269, 365, 556, 613, 791, 962, 1102, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 776, 1065
HpyF3I CTNAG 5 cut(s) 9, 137, 606, 696, 785
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 6 cut(s) 166, 858, 1090, 1106, 1282, 1289
KspAI GTTAAC 1 cut(s) 1174
Kzo9I GATC 3 cut(s) 169, 184, 1282
LguI GCTCTTC 2 cut(s) 1011, 1049
LmnI GCTCC 2 cut(s) 426, 767
Lsp1109I GCAGC 3 cut(s) 288, 782, 1285
LweI GCATC 4 cut(s) 226, 266, 592, 1177
MaeI CTAG 4 cut(s) 587, 710, 924, 992
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 4 cut(s) 74, 346, 862, 1157
MalI GATC 3 cut(s) 171, 186, 1284
MboI GATC 3 cut(s) 169, 184, 1282
MboII GAAGA 9 cut(s) 142, 158, 179, 292, 304, 656, 910, 1028, 1066
MfeI CAATTG 2 cut(s) 774, 792
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 3 cut(s) 615, 759, 1061
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 7 cut(s) 201, 332, 439, 507, 681, 774, 792
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 42, 893, 900, 951
MmeI TCCRAC 3 cut(s) 147, 874, 1125
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 296, 917
MscI TGGCCA 1 cut(s) 464
MseI TTAA 3 cut(s) 402, 546, 1173
MslI CAYNNNNRTG 1 cut(s) 1101
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 2 cut(s) 386, 1214
MspR9I CCNGG 3 cut(s) 289, 386, 1062
MunI CAATTG 2 cut(s) 774, 792
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 289, 1062
MwoI GCNNNNNNNGC 3 cut(s) 111, 776, 1065
NciI CCSGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 232
NdeII GATC 3 cut(s) 169, 184, 1282
NlaIII CATG 6 cut(s) 166, 858, 1090, 1106, 1282, 1289
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 3 cut(s) 74, 346, 1157
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 166
NspV TTCGAA 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 888
PagI TCATGA 1 cut(s) 1285
PciSI GCTCTTC 2 cut(s) 1011, 1049
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 2 cut(s) 296, 917
PfeI GAWTC 4 cut(s) 376, 434, 1026, 1301
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 4 cut(s) 143, 278, 772, 1275
PleI GAGTC 4 cut(s) 42, 893, 899, 950
PpsI GAGTC 4 cut(s) 42, 893, 899, 950
Psp6I CCWGG 2 cut(s) 287, 1060
PspFI CCCAGC 1 cut(s) 1021
PspGI CCWGG 2 cut(s) 287, 1060
PspN4I GGNNCC 1 cut(s) 171
PspXI VCTCGAGB 1 cut(s) 888
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 3 cut(s) 341, 523, 626
RsaNI GTAC 3 cut(s) 340, 522, 625
RseI CAYNNNNRTG 1 cut(s) 1101
SapI GCTCTTC 2 cut(s) 1011, 1049
SaqAI TTAA 3 cut(s) 402, 546, 1173
SatI GCNGC 4 cut(s) 142, 277, 771, 1274
Sau3AI GATC 3 cut(s) 169, 184, 1282
SchI GAGTC 4 cut(s) 42, 893, 900, 951
ScrFI CCNGG 3 cut(s) 289, 386, 1062
SduI GDGCHC 3 cut(s) 615, 759, 1061
SfaNI GCATC 4 cut(s) 226, 266, 592, 1177
Sfr274I CTCGAG 1 cut(s) 888
SfuI TTCGAA 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 888
SmiMI CAYNNNNRTG 1 cut(s) 1101
SmlI CTYRAG 3 cut(s) 888, 1119, 1193
SmoI CTYRAG 3 cut(s) 888, 1119, 1193
SpeI ACTAGT 1 cut(s) 709
Sse9I AATT 7 cut(s) 201, 332, 439, 507, 681, 774, 792
SsiI CCGC 2 cut(s) 41, 141
SspMI CTAG 4 cut(s) 587, 710, 924, 992
StyD4I CCNGG 3 cut(s) 287, 384, 1060
StyI CCWWGG 2 cut(s) 534, 616
TaaI ACNGT 2 cut(s) 761, 812
TaiI ACGT 1 cut(s) 348
TaqI TCGA 8 cut(s) 19, 177, 190, 889, 966, 1029, 1036, 1043
TasI AATT 7 cut(s) 201, 332, 439, 507, 681, 774, 792
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 4 cut(s) 376, 434, 1026, 1301
Tru1I TTAA 3 cut(s) 402, 546, 1173
Tru9I TTAA 3 cut(s) 402, 546, 1173
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 3 cut(s) 74, 346, 1157
TseI GCWGC 3 cut(s) 276, 770, 1273
Tsp45I GTSAC 3 cut(s) 74, 346, 1157
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 1 cut(s) 975
TspRI CASTG 1 cut(s) 679
VneI GTGCAC 1 cut(s) 611
XapI RAATTY 2 cut(s) 332, 681
XceI RCATGY 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 888
XmnI GAANNNNTTC 2 cut(s) 296, 917
XspI CTAG 4 cut(s) 587, 710, 924, 992
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.