Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012222

Physical Location & Seq

Genomic Coordinates Forward (+)

24768547 .. 24771918

Gene Structure 3372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0236100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGCAAGACTGCTTGTCCGGCGTCGCCGCCGTCGAGCACGTCCTGCTTAGCCTCGGCTCCGTCGACCGCGTCACTGACTCCGCCGACCTCGGTTGTCAATCTCTGACGCATTTCGACGGCCAAATTTCCGGCGTTACGGCTACGAAGTTTCTGTCAAGATGGAGAAACAATGGCTGCAATTTGATAGAGAAAAGGAACAGACAAAGAAGAGGAAAAGAGGTGATGAAGAACAGAAAAAGAAGGGGAAAAAGAAGAGGAGGAAGTGGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGCAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTGGTAGCTGAAGGAAAGATCTCTTCAACAAATCCAAGTACAAAAGTTCATTGTGTGCCTCTTGGACGAAATTGTTGGAAGGTTTGGGTTGATGTGGTGTTTGATGAGTATCAGACTATGGAAGTGTACAGAGCAACCATGGATGCCAAACAACTTGGTGAAGCTGTAGGAAGCACTCTTGCATGGCCCAAAAGCTCCATTGAAATGCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

187

Amino Acids

20.87

Weight (kDa)

8.54

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	100 - 184	2e-14	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14520
fragaria_vesca	FvH4_3g26080 FvH4_3g26080 FvH4_3g26080
malus_domestica	MD09G1027600.v1.1 MD17G1027600.v1.1
prunus_persica	Prupe.3G291100_v2.0.a1
pyrus_communis	pycom111g02170 pycom17g02260
rosa_chinensis	RchiOBHm_Chr5g0047391
rosa_laevigata	RLG00000034492
rosa_multiflora	Rmu_sc0000580.1_g000062 Rmu_sc0003441.1_g000056
rosa_roxburghii	Rroxscaffold_1G00034010
rosa_rugosa	Rorug05G0236100
rosa_samantha	Rh5AG314900 Rh5CG350800 Rh5DG334700
rosa_wichuraiana	Rw5G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	30, 70, 84
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	388, 476
AgsI	TTSAA	4 cut(s)	299, 322, 375, 551
AhdI	GACNNNNNGTC	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	43
AluBI	AGCT	3 cut(s)	356, 512, 543
AluI	AGCT	3 cut(s)	356, 512, 543
Alw21I	GWGCWC	2 cut(s)	42, 316
Alw44I	GTGCAC	1 cut(s)	312
AoxI	GGCC	2 cut(s)	121, 533
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	126
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	269, 534
AsuHPI	GGTGA	2 cut(s)	235, 518
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	42, 316
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	156
BceAI	ACGGC	3 cut(s)	17, 136, 156
BfmI	CTRYAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	2 cut(s)	30, 178
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	2 cut(s)	31, 179
Bme18I	GGWCC	1 cut(s)	269
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	269, 534
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	481
Bpu1102I	GCTNAGC	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	55, 91, 486
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	55, 91, 486
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	123, 535
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	42, 316
BsiSI	CCGG	2 cut(s)	21, 132
BsnI	GGCC	2 cut(s)	123, 535
Bsp1286I	GDGCHC	2 cut(s)	42, 316
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	292, 366
Bsp1720I	GCTNAGC	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	3 cut(s)	30, 70, 84
BspANI	GGCC	2 cut(s)	123, 535
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	474
BssECI	CCNNGG	3 cut(s)	55, 91, 486
BssMI	GATC	2 cut(s)	292, 366
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	486
Bst6I	CTCTTC	3 cut(s)	205, 250, 376
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	50, 561
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	295, 369
BstMBI	GATC	2 cut(s)	292, 366
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 46
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	123, 535
BtgI	CCRYGG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	269, 534
CseI	GACGC	3 cut(s)	13, 61, 118
Csp6I	GTAC	2 cut(s)	387, 475
CviAII	CATG	2 cut(s)	487, 531
CviJI	RGCY	9 cut(s)	54, 60, 123, 143, 177, 356, 512, 535, 543
CviKI_1	RGCY	9 cut(s)	54, 60, 123, 143, 177, 356, 512, 535, 543
CviQI	GTAC	2 cut(s)	387, 475
DdeI	CTNAG	2 cut(s)	50, 561
DpnI	GATC	2 cut(s)	294, 368
DpnII	GATC	2 cut(s)	292, 366
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	3 cut(s)	205, 250, 376
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	3 cut(s)	205, 250, 376
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	490, 534
FaiI	YATR	4 cut(s)	336, 467, 488, 532
FatI	CATG	2 cut(s)	486, 530
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	30, 178
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	2 cut(s)	30, 178
GluI	GCNGC	2 cut(s)	30, 178
HaeIII	GGCC	2 cut(s)	123, 535
HapII	CCGG	2 cut(s)	21, 132
HgaI	GACGC	3 cut(s)	13, 61, 118
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	490, 534
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	21, 132
HphI	GGTGA	2 cut(s)	235, 518
Hpy166II	GTNNAC	4 cut(s)	67, 269, 314, 475
Hpy188I	TCNGA	2 cut(s)	108, 462
Hpy188III	TCNNGA	2 cut(s)	159, 296
Hpy8I	GTNNAC	4 cut(s)	67, 269, 314, 475
Hpy99I	CGWCG	4 cut(s)	29, 38, 68, 122
HpyAV	CCTTC	3 cut(s)	237, 353, 421
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	180, 314, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 46
HpyF3I	CTNAG	2 cut(s)	50, 561
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	490, 534
Kzo9I	GATC	2 cut(s)	292, 366
LmnI	GCTCC	4 cut(s)	4, 65, 286, 548
LpnPI	CCDG	3 cut(s)	34, 59, 145
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	73, 136
MalI	GATC	2 cut(s)	294, 368
MboI	GATC	2 cut(s)	292, 366
MboII	GAAGA	6 cut(s)	222, 241, 267, 350, 353, 363
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	42, 316
MluCI	AATT	5 cut(s)	126, 181, 322, 331, 418
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	7 cut(s)	65, 101, 206, 214, 251, 254, 417
MroXI	GAANNNNTTC	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	2 cut(s)	21, 132
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	21, 46
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	292, 366
NlaIII	CATG	2 cut(s)	490, 534
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 63
PdmI	GAANNNNTTC	1 cut(s)	555
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	31, 179
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	269, 534
PsuI	RGATCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	388, 476
RsaNI	GTAC	2 cut(s)	387, 475
RseI	CAYNNNNRTG	1 cut(s)	551
SalI	GTCGAC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	30, 178
Sau3AI	GATC	2 cut(s)	292, 366
Sau96I	GGNCC	2 cut(s)	269, 534
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	42, 316
SetI	ASST	7 cut(s)	45, 93, 225, 358, 432, 514, 545
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	5 cut(s)	126, 181, 322, 331, 418
SsiI	CCGC	3 cut(s)	30, 70, 84
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	36, 66, 117
TasI	AATT	5 cut(s)	126, 181, 322, 331, 418
TatI	WGTACW	2 cut(s)	386, 474
TauI	GCSGC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	242, 351, 360, 386
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.