Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013863

Physical Location & Seq

Genomic Coordinates Forward (+)

27358988 .. 27360026

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0249400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAATCCATGCCAGTAATTGCTGAAGGATTGGCATGGAGTGAGGAGGAGCACGGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACCACAAGATCTCCAACCCAGATCGCCAGTAATGCCCAAAAATATTTTCTCAGACTTCAAAATAATAGTACCACCGCCAACACTGCAACCATCAACAACTTCGACCCCCACAAGAAAAGTCGCCGAGGTTGTCCCAGCCCTTTCGATTACTGCTGGCCAGCCGTTCATAATTCGACGCCTCTCCAAATTGATGTTAATTTGAAGAACTCATCGTCTCAGAGTGCAGTAGCAGCAGGAGGAGGAGGACTTGACTTAGAAGTACTTAAGCTTGCAGCAAGCATAATGCCGTTGTGGTTAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003871 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008705 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0042084 GO:0042085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050667 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Meth_synt_1 Meth_synt_2

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

6.9

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 56	5.8e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20980 AT5G20980
fragaria_vesca	FvH4_3g27060 FvH4_3g27060 FvH4_3g27060 FvH4_3g27060 FvH4_3g27060
malus_domestica	MD11G1179000.v1.1
prunus_persica	Prupe.6G151800_v2.0.a1
pyrus_communis	pycom11g15450
rosa_chinensis	RchiOBHm_Chr5g0049641
rosa_laevigata	RLG00000034629
rosa_multiflora	Rmu_sc0013777.1_g000007
rosa_roxburghii	Rroxscaffold_1G00032020
rosa_rugosa	Rorug05G0249400
rosa_samantha	Rh5AG325900
rosa_wichuraiana	Rw5G030800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	2 cut(s)	193, 384
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	77, 182, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	2 cut(s)	82, 391
AluI	AGCT	2 cut(s)	82, 391
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	353, 395
AsuHPI	GGTGA	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	365, 407
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	269, 394
BcoDI	GTCTC	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	2 cut(s)	354, 396
BlsI	GCNGC	2 cut(s)	355, 397
BmcAI	AGTACT	1 cut(s)	384
BmsI	GCATC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bse1I	ACTGG	2 cut(s)	14, 150
BseDI	CCNNGG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	187, 353
BseNI	ACTGG	2 cut(s)	14, 150
BseRI	GAGGAG	4 cut(s)	59, 62, 375, 378
BseXI	GCAGC	2 cut(s)	365, 407
BseYI	CCCAGC	2 cut(s)	82, 257
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	342
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	131, 144, 421
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	186, 352
BspTI	CTTAAG	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	14, 150
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	131, 144, 421
BssNI	GRCGYC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	299
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	4 cut(s)	278, 282, 393, 400
BstDEI	CTNAG	3 cut(s)	173, 339, 376
BstKTI	GATC	3 cut(s)	134, 147, 424
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	3 cut(s)	131, 144, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 206, 353
BstV1I	GCAGC	2 cut(s)	365, 407
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	4 cut(s)	278, 282, 393, 400
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	192, 383
CviAII	CATG	2 cut(s)	10, 36
CviJI	RGCY	5 cut(s)	82, 261, 280, 284, 391
CviKI_1	RGCY	5 cut(s)	82, 261, 280, 284, 391
CviQI	GTAC	2 cut(s)	192, 383
DdeI	CTNAG	3 cut(s)	173, 339, 376
DpnI	GATC	3 cut(s)	133, 146, 423
DpnII	GATC	3 cut(s)	131, 144, 421
EaeI	YGGCCR	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	13, 39
FaiI	YATR	5 cut(s)	11, 37, 120, 291, 404
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	2 cut(s)	9, 35
Fnu4HI	GCNGC	2 cut(s)	354, 396
Fsp4HI	GCNGC	2 cut(s)	354, 396
GluI	GCNGC	2 cut(s)	354, 396
GsaI	CCCAGC	2 cut(s)	86, 261
HaeIII	GGCC	1 cut(s)	280
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	13, 39
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	176, 342
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	20
HpyCH4V	TGCA	3 cut(s)	209, 347, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 206, 353
HpyF3I	CTNAG	3 cut(s)	173, 339, 376
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	13, 39
Kzo9I	GATC	3 cut(s)	131, 144, 421
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	8 cut(s)	27, 68, 155, 163, 262, 271, 294, 342
Lsp1109I	GCAGC	2 cut(s)	365, 407
LweI	GCATC	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	133, 146, 423
MboI	GATC	3 cut(s)	131, 144, 421
MboII	GAAGA	1 cut(s)	337
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	4 cut(s)	18, 292, 309, 319
MluNI	TGGCCA	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	9 cut(s)	37, 40, 61, 93, 242, 312, 353, 356, 359
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	2 cut(s)	318, 387
Msp20I	TGGCCA	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	155, 206, 353
NdeII	GATC	3 cut(s)	131, 144, 421
NlaIII	CATG	2 cut(s)	13, 39
NmeAIII	GCCGAG	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	355, 397
PspFI	CCCAGC	2 cut(s)	82, 257
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	2 cut(s)	193, 384
RsaNI	GTAC	2 cut(s)	192, 383
SaqAI	TTAA	2 cut(s)	318, 387
SatI	GCNGC	2 cut(s)	354, 396
Sau3AI	GATC	3 cut(s)	131, 144, 421
ScaI	AGTACT	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	3 cut(s)	84, 253, 393
SfaNI	GCATC	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	65, 386
SmoI	CTYRAG	2 cut(s)	65, 386
Sse9I	AATT	4 cut(s)	18, 292, 309, 319
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	225, 267, 296
TasI	AATT	4 cut(s)	18, 292, 309, 319
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	318, 387
Tru9I	TTAA	2 cut(s)	318, 387
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	353, 395
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.