Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014312

Physical Location & Seq

Genomic Coordinates Reverse (-)

34956330 .. 34957523

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCACCACCGCTTCTCCGACCCCGTCAATCAGTGGTCGAAGGCCGCTGGAAAGCTCTCTCCGGCCACCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGATAGTAGTTTGCGTTATACGACGGTGCAATTGGGGACGCCGGGAATGAAGTTTTTGGTGGCGCTTGATACCAGGAGTGACCTGTTTTGGGTGCCTTGCGAAGGAACAGCTTATGCTTCTGTGCAAAGTGGTTCATTCCTGGGTATTACTGCTCCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009706 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016730 GO:0019439 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032441 GO:0032501 GO:0032502 GO:0033013 GO:0033015 GO:0034641 GO:0042170 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046149 GO:0046483 GO:0046700 GO:0048037 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051536 GO:0051540 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0090567 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

117

Amino Acids

12.51

Weight (kDa)

6.02

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	46 - 75	4.3e-06	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44880
fragaria_vesca	FvH4_3g30560 FvH4_3g30560 FvH4_3g30560
malus_domestica	MD11G1149200.v1.1
prunus_persica	Prupe.6G113600_v2.0.a1
pyrus_communis	pycom11g12210
rosa_chinensis	RchiOBHm_Chr5g0056561
rosa_laevigata	RLG00000035105
rosa_multiflora	Rmu_sc0000366.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023780
rosa_rugosa	Rorug05G0300800 Rorug05G0300900
rosa_samantha	Rh5BG382300 Rh5CG405500 Rh5DG395300
rosa_wichuraiana	Rw5G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	2 cut(s)	10, 45
AcoI	YGGCCR	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	208, 221
AjnI	CCWGG	2 cut(s)	191, 258
AluBI	AGCT	2 cut(s)	55, 230
AluI	AGCT	2 cut(s)	55, 230
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	2 cut(s)	42, 63
AspLEI	GCGC	1 cut(s)	184
AsuC2I	CCSGG	3 cut(s)	162, 331, 332
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	193, 260
BcnI	CCSGG	3 cut(s)	162, 331, 332
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	5 cut(s)	162, 193, 260, 331, 332
BmeT110I	CYCGRG	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	5 cut(s)	162, 193, 260, 331, 332
BpuMI	CCSGG	3 cut(s)	162, 331, 332
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	259, 330
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 221
BseBI	CCWGG	2 cut(s)	193, 260
BseDI	CCNNGG	2 cut(s)	259, 330
BseLI	CCNNNNNNNGG	2 cut(s)	208, 221
BshFI	GGCC	2 cut(s)	44, 65
BshNI	GGYRCC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	62, 161, 331
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	208, 221
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	44, 65
BsoBI	CYCGRG	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	10, 45
BspANI	GGCC	2 cut(s)	44, 65
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	259, 330
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	193, 260
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	158
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	193, 260
BstSCI	CCNGG	5 cut(s)	160, 191, 258, 329, 330
BstSFI	CTRYAG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	44, 65
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	38, 354
CfoI	GCGC	1 cut(s)	184
Cfr9I	CCCGGG	1 cut(s)	330
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	5 cut(s)	44, 55, 65, 230, 339
CviKI_1	RGCY	5 cut(s)	44, 55, 65, 230, 339
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	191, 258
EcoRV	GATATC	1 cut(s)	309
FaiI	YATR	3 cut(s)	138, 234, 299
FaqI	GGGAC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	44, 65
HapII	CCGG	3 cut(s)	62, 161, 331
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HpaII	CCGG	3 cut(s)	62, 161, 331
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	19, 88, 108
Hpy99I	CGWCG	2 cut(s)	92, 145
HpyAV	CCTTC	3 cut(s)	34, 215, 329
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	4, 148, 244, 347
Hsp92I	GRCGYC	1 cut(s)	158
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	9 cut(s)	33, 75, 174, 178, 205, 215, 245, 272, 344
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	316
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	42, 111
MnlI	CCTC	2 cut(s)	86, 124
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	3 cut(s)	62, 161, 331
MspR9I	CCNGG	5 cut(s)	162, 193, 260, 331, 332
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	193, 260
NciI	CCSGG	3 cut(s)	162, 331, 332
NdeII	GATC	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	191, 258
PspGI	CCWGG	2 cut(s)	191, 258
PspN4I	GGNNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	108
ScrFI	CCNGG	5 cut(s)	162, 193, 260, 331, 332
SetI	ASST	4 cut(s)	57, 116, 204, 232
SfcI	CTRYAG	1 cut(s)	345
SmaI	CCCGGG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	10, 45
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	5 cut(s)	160, 191, 258, 329, 330
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	149
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	2 cut(s)	38, 354
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	182, 243
TspMI	CCCGGG	1 cut(s)	330
TspRI	CASTG	2 cut(s)	38, 354
Tth111I	GACNNNGTC	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	219
XmaI	CCCGGG	1 cut(s)	330
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.