Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015991

Physical Location & Seq

Genomic Coordinates Forward (+)

36010945 .. 36013001

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGGCATTGCACAGTGGAGTGCCAACCCACCTAAATTTACGACTTTGCCACTCCACCCAGCCCTCCCTCAAAGTAAAACCCCAATTACTTGTTCTTCTTCCACACTTCCCATCTCTCCAAACCCCAACGTTTCACTCAACTTCCCTCAAATTGACCGCCTCTTTCTCATCTGGGTCTGCAAGCAAAGCATCAATGGCAGCTTCTGCCCCCTCCACGGAGGCAGAGACCAAACCCTTCTCTGTCCTCTTTGTGTGCTTGGGCAACATCTGCAGAAGCCCAGCTGCCGAAGGAGTCTTCACGGACTTGGTCAAGAAAAGGGGTCTGGAATCCAAGTTCAAGATTGACTCTGCTGGCACCATTAATTACCATGAGGGAAATCAAGCGGACCCAAGAATGAGGGCAGCGGCTAAAAGGCGTGGGATTGAGATAACATCTTTGTCCAGGCCAATCAAGCTGCCTGATTTTCGAGATTTCGATGTTATTCTTGCAATGGACAAGCAAAACCGAGCTGATATTTTGGAGGCATTTAATCGGTGGAAATTTAGAGAACCACTACCTGAGGATGCTTATAAAAAGGTCAAGTTAATGTGTTCTTATTGTAAGAAACACGATGAAACTGAAGTGCCGGATCCTTATTATGGTGGACCTCAAGGTTTTGAGAAGGTTTTAGATTTACTTGAAGATGCATGTGAATCATTGTTGGACAGCATATTGGCTGAGAACAAGCATATTTTGGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

248

Amino Acids

27.53

Weight (kDa)

8.46

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LMWPc	PF01451	82 - 235	8.6e-41	Low molecular weight phosphotyrosine protein phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28100
fragaria_vesca	FvH4_3g30940
malus_domestica	MD00G1032500.v1.1
prunus_persica	Prupe.6G109300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057471
rosa_laevigata	RLG00000035158
rosa_multiflora	Rmu_sc0000508.1_g000012 Rmu_sc0003730.1_g000020
rosa_roxburghii	Rroxscaffold_1G00022980
rosa_rugosa	Rorug05G0307500
rosa_samantha	Rh5AG376100 Rh5BG387000 Rh5CG410400 Rh5DG401200
rosa_wichuraiana	Rw5G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	3 cut(s)	159, 386, 407
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	2 cut(s)	626, 639
AcsI	RAATTY	2 cut(s)	37, 542
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	2 cut(s)	217, 641
AgsI	TTSAA	2 cut(s)	340, 683
AjnI	CCWGG	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	4 cut(s)	203, 284, 457, 512
AluI	AGCT	4 cut(s)	203, 284, 457, 512
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	626, 639
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	4 cut(s)	200, 284, 404, 457
ApoI	RAATTY	2 cut(s)	37, 542
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	388, 647
AvaII	GGWCC	2 cut(s)	388, 647
AxyI	CCTNAGG	1 cut(s)	561
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	4 cut(s)	212, 271, 416, 444
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	5 cut(s)	201, 285, 405, 408, 458
BlsI	GCNGC	5 cut(s)	202, 286, 406, 409, 459
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	2 cut(s)	388, 647
BmgT120I	GGNCC	2 cut(s)	388, 647
BmiI	GGNNCC	3 cut(s)	358, 390, 633
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	3 cut(s)	200, 556, 676
BpiI	GAAGAC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 641
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	8, 498
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	2 cut(s)	217, 641
BseMI	GCAATG	2 cut(s)	8, 498
BseMII	CTCAG	2 cut(s)	552, 711
BseXI	GCAGC	4 cut(s)	212, 271, 416, 444
BseYI	CCCAGC	2 cut(s)	60, 280
BshFI	GGCC	1 cut(s)	448
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	217, 641
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	448
Bso31I	GGTCTC	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	3 cut(s)	159, 386, 407
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	2 cut(s)	553, 712
BspLI	GGNNCC	3 cut(s)	358, 390, 633
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	2 cut(s)	626, 639
BspT107I	GGYRCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	8, 498
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	206, 270
BstC8I	GCNNGC	2 cut(s)	184, 355
BstDEI	CTNAG	2 cut(s)	561, 720
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	631
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 197, 206, 270, 454
BstNI	CCWGG	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	693
BstSCI	CCNGG	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	4 cut(s)	212, 271, 416, 444
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	184, 355
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	388, 647
CviAII	CATG	2 cut(s)	371, 690
CviJI	RGCY	9 cut(s)	64, 203, 279, 284, 410, 448, 457, 512, 719
CviKI_1	RGCY	9 cut(s)	64, 203, 279, 284, 410, 448, 457, 512, 719
DdeI	CTNAG	2 cut(s)	561, 720
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	388, 647
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	691
FaeI	CATG	2 cut(s)	374, 693
FaiI	YATR	6 cut(s)	372, 573, 642, 691, 713, 732
FatI	CATG	2 cut(s)	370, 689
Fnu4HI	GCNGC	5 cut(s)	201, 285, 405, 408, 458
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	5 cut(s)	201, 285, 405, 408, 458
GluI	GCNGC	5 cut(s)	201, 285, 405, 408, 458
GsaI	CCCAGC	2 cut(s)	64, 284
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	1 cut(s)	629
Hin1II	CATG	2 cut(s)	374, 693
HinfI	GANTC	5 cut(s)	294, 329, 347, 695, 740
HpaII	CCGG	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188III	TCNNGA	4 cut(s)	313, 326, 340, 470
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	3 cut(s)	247, 284, 658
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	13, 182, 273, 491, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 197, 206, 270, 454
HpyF3I	CTNAG	2 cut(s)	561, 720
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	374, 693
Kzo9I	GATC	1 cut(s)	631
Lsp1109I	GCAGC	4 cut(s)	212, 271, 416, 444
LweI	GCATC	3 cut(s)	200, 556, 676
MaeII	ACGT	1 cut(s)	131
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	4 cut(s)	89, 92, 289, 695
MflI	RGATCY	1 cut(s)	631
MluCI	AATT	5 cut(s)	37, 86, 152, 364, 542
MlyI	GAGTC	2 cut(s)	303, 341
MmeI	TCCRAC	1 cut(s)	684
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	4 cut(s)	363, 531, 587, 745
MspA1I	CMGCKG	2 cut(s)	284, 407
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	5 cut(s)	188, 197, 206, 270, 454
NdeII	GATC	1 cut(s)	631
NlaIII	CATG	2 cut(s)	374, 693
NlaIV	GGNNCC	3 cut(s)	358, 390, 633
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	693
PfeI	GAWTC	3 cut(s)	329, 695, 740
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	202, 286, 406, 409, 459
PleI	GAGTC	2 cut(s)	302, 341
PpsI	GAGTC	2 cut(s)	302, 341
PshBI	ATTAAT	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	573
Psp1406I	AACGTT	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	443
PspFI	CCCAGC	2 cut(s)	60, 280
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	358, 390, 633
PspPI	GGNCC	2 cut(s)	388, 647
PstI	CTGCAG	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	631
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	363, 531, 587, 745
SatI	GCNGC	5 cut(s)	201, 285, 405, 408, 458
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	2 cut(s)	388, 647
SchI	GAGTC	2 cut(s)	303, 341
ScrFI	CCNGG	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	200, 556, 676
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	2 cut(s)	388, 647
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	5 cut(s)	37, 86, 152, 364, 542
SsiI	CCGC	3 cut(s)	159, 386, 407
StyD4I	CCNGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	469, 477
TasI	AATT	5 cut(s)	37, 86, 152, 364, 542
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	3 cut(s)	329, 695, 740
Tru1I	TTAA	4 cut(s)	363, 531, 587, 745
Tru9I	TTAA	4 cut(s)	363, 531, 587, 745
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	4 cut(s)	200, 284, 404, 457
TspDTI	ATGAA	2 cut(s)	17, 630
TspGWI	ACGGA	2 cut(s)	233, 317
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	388, 647
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	37, 542
XceI	RCATGY	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.