Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012016

Physical Location & Seq

Genomic Coordinates Forward (+)

67008047 .. 67008782

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0486400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCAATGTATAGGCAATTTCAGTCAGGGGAACTTCTCTTACGGAAATCCGGTGGAGGTGTCTTTATAAAAGAGCATGCTAGACTTATAATTACTGATGATTTACAAGTTACGCCCCCATTGATTGGAGCGAATTCTCCTTTGTTTACCAAGTTTGGAGTCATGGTTGGGAATTGTACTGCTTCTCAGATGACTTTCAATGTAGGATTACGTAAGGTTTGGAATTTGATCTTGCGCTCAGTTGTGTCGAAGTCACCTTTGACGGATACGCTGCTGAAGCGTTGTCCAGTAGCAGGTCTGAGCATTAATAATTTTATTCAAGAAAAGTGGAAGAATACTCAAACAGACGCACAGAACAAGGAAGAGAACATTTTGGTCAAGCTTATGATTAGCAAATCGATGAAGATGGTTTGTTATGCAGAAGCAGGGATAGATTTTGTCAGCTTACTCCAGAGCTTCTTAATTGTTCCATTTGGGTATATAGTCAAAAGAATGCAGGATGGTTCCCTGGAAGGATGCATCGATCAGTTATGCAAAAGTGTCCAGGATCTTGATGATCAATACGGGAAGTCAATTAAAAAACCACAGGGAAATGCTTCTGACACCCAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

204

Amino Acids

22.7

Weight (kDa)

9.08

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	15 - 191	8e-39	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13490
fragaria_vesca	FvH4_3g45770 FvH4_3g45770
malus_domestica	MD03G1003300.v1.1 MD11G1003100.v1.1
prunus_persica	Prupe.6G002900_v2.0.a1
pyrus_communis	pycom11g00280
rosa_chinensis	RchiOBHm_Chr5g0083841
rosa_laevigata	RLG00000037057
rosa_multiflora	Rmu_sc0001287.1_g000040 Rmu_sc0024007.1_g000006
rosa_roxburghii	Rroxscaffold_1G00000750
rosa_rugosa	Rorug05G0486400 Rorug05G0486500
rosa_samantha	Rh5AG539600 Rh5BG564700 Rh5CG586600 Rh5DG573200
rosa_wichuraiana	Rw5G050170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	68, 89
Acc36I	ACCTGC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	1 cut(s)	555
AcsI	RAATTY	2 cut(s)	133, 223
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	125, 293
AgsI	TTSAA	2 cut(s)	199, 320
AjnI	CCWGG	2 cut(s)	507, 543
AluBI	AGCT	3 cut(s)	382, 444, 456
AluI	AGCT	3 cut(s)	382, 444, 456
AlwI	GGATC	1 cut(s)	555
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	133, 223
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	400, 494
BciT130I	CCWGG	2 cut(s)	509, 545
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	556
BfaI	CTAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	2 cut(s)	509, 545
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	509, 545
BmsI	GCATC	2 cut(s)	506, 528
BpmI	CTGGAG	1 cut(s)	434
Bsa29I	ATCGAT	2 cut(s)	398, 522
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 293
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	509, 545
BseCI	ATCGAT	2 cut(s)	398, 522
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	2 cut(s)	505, 521
BseLI	CCNNNNNNNGG	2 cut(s)	125, 293
BseMII	CTCAG	3 cut(s)	200, 252, 290
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	258
BshVI	ATCGAT	2 cut(s)	398, 522
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	125, 293
BsmI	GAATGC	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	228, 523, 547, 556
BspCNI	CTCAG	3 cut(s)	199, 251, 291
BspDI	ATCGAT	2 cut(s)	398, 522
BspLI	GGNNCC	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	4 cut(s)	228, 523, 547, 556
Bst2UI	CCWGG	2 cut(s)	509, 545
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	186, 238, 299
BstF5I	GGATG	2 cut(s)	505, 521
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	231, 526, 550, 559
BstMBI	GATC	4 cut(s)	228, 523, 547, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	509, 545
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	507, 543
BstSNI	TACGTA	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
Bsu15I	ATCGAT	2 cut(s)	398, 522
BsuI	GTATCC	1 cut(s)	259
BsuTUI	ATCGAT	2 cut(s)	398, 522
BtsCI	GGATG	2 cut(s)	505, 521
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	237
ClaI	ATCGAT	2 cut(s)	398, 522
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	2 cut(s)	77, 163
CviJI	RGCY	3 cut(s)	382, 444, 456
CviKI_1	RGCY	3 cut(s)	382, 444, 456
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	3 cut(s)	186, 238, 299
DpnI	GATC	4 cut(s)	230, 525, 549, 558
DpnII	GATC	4 cut(s)	228, 523, 547, 556
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco105I	TACGTA	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	507, 543
EcoT22I	ATGCAT	1 cut(s)	521
FaeI	CATG	2 cut(s)	80, 166
FatI	CATG	2 cut(s)	76, 162
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	2 cut(s)	512, 528
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	434
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	80, 166
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	189, 300, 601
Hpy188III	TCNNGA	3 cut(s)	320, 451, 551
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	419, 496, 519, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	3 cut(s)	186, 238, 299
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	80, 166
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	228, 523, 547, 556
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	2 cut(s)	506, 528
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	109, 252
MalI	GATC	4 cut(s)	230, 525, 549, 558
MboI	GATC	4 cut(s)	228, 523, 547, 556
MboII	GAAGA	3 cut(s)	343, 374, 415
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	8 cut(s)	17, 90, 133, 172, 223, 310, 462, 573
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	3 cut(s)	306, 461, 576
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	509, 545
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	509, 545
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	4 cut(s)	228, 523, 547, 556
NlaIII	CATG	2 cut(s)	80, 166
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	595
PflMI	CCANNNNNTGG	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	2 cut(s)	68, 89
Psp6I	CCWGG	2 cut(s)	507, 543
PspGI	CCWGG	2 cut(s)	507, 543
PspN4I	GGNNCC	1 cut(s)	505
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	306, 461, 576
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	4 cut(s)	228, 523, 547, 556
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	509, 545
SetI	ASST	8 cut(s)	61, 214, 219, 259, 298, 384, 446, 458
SfaNI	GCATC	2 cut(s)	506, 528
SnaBI	TACGTA	1 cut(s)	212
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	8 cut(s)	17, 90, 133, 172, 223, 310, 462, 573
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	507, 543
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	248, 398, 522
TasI	AATT	8 cut(s)	17, 90, 133, 172, 223, 310, 462, 573
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	306, 461, 576
Tru9I	TTAA	3 cut(s)	306, 461, 576
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	58, 278
Van91I	CCANNNNNTGG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	2 cut(s)	133, 223
XceI	RCATGY	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.