Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004739

Physical Location & Seq

Genomic Coordinates Reverse (-)

67281963 .. 67286881

Gene Structure 4919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0489200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTCCATGTTCTCTGCTTGGAACTTGACCATGTTCATCACATGGAACTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCGGGCAGTGACAAGAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTTAGAACAGAGTCTTTGATGAGGCAGCTACTTTACAATCCTCAACTCCAAGCTACATGTCCCCTACCGTTTGATGAAGCAAAGCTCTGGAACAGTCAGAGCGGACCACAATTGAAGCAAAAAATTCAAAAGAAATTCAGAAACATCAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTGGATGGTAAAAATCATCAAGATCAACTTGTATGTCCAGAACTACAGGGAAAAGGAGAAGTTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Microtub_bd

Protein Analysis

167

Amino Acids

19.2

Weight (kDa)

6.37

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	13 - 152	2.2e-49	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55550
fragaria_vesca	FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040 FvH4_3g46040
malus_domestica	MD03G1001300.v1.1
prunus_persica	Prupe.6G000800_v2.0.a1
pyrus_communis	pycom03g00110
rosa_chinensis	RchiOBHm_Chr5g0084121
rosa_laevigata	RLG00000037083
rosa_multiflora	Rmu_ssc0000372.1_g000094
rosa_roxburghii	Rroxscaffold_1G00000520
rosa_rugosa	Rorug05G0489200 Rorug05G0489200 Rorug05G0489200 Rorug05G0489300
rosa_samantha	Rh5AG541800 Rh5BG567400 Rh5CG589200 Rh5DG575600
rosa_wichuraiana	Rw5G050400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	291
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	3 cut(s)	91, 312, 323
AfaI	GTAC	2 cut(s)	98, 409
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	304, 317, 392, 418
AluBI	AGCT	5 cut(s)	137, 217, 242, 274, 388
AluI	AGCT	5 cut(s)	137, 217, 242, 274, 388
AlwI	GGATC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	137, 214
ApoI	RAATTY	3 cut(s)	91, 312, 323
AseI	ATTAAT	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	124, 226
BccI	CCATC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	138, 476
BisI	GCNGC	2 cut(s)	138, 215
BlsI	GCNGC	2 cut(s)	139, 216
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	365, 442
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	124, 226
Bsh1236I	CGCG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	58, 79, 420, 454
BspACI	CCGC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	291
BssMI	GATC	4 cut(s)	58, 79, 420, 454
Bst4CI	ACNGT	2 cut(s)	258, 284
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	148, 159, 191
BstF5I	GGATG	2 cut(s)	365, 442
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	4 cut(s)	61, 82, 423, 457
BstMBI	GATC	4 cut(s)	58, 79, 420, 454
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	138, 476
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	124, 226
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	365, 442
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 343
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	97, 408
CviAII	CATG	6 cut(s)	8, 32, 43, 56, 179, 246
CviJI	RGCY	7 cut(s)	137, 158, 217, 242, 274, 376, 388
CviKI_1	RGCY	7 cut(s)	137, 158, 217, 242, 274, 376, 388
CviQI	GTAC	2 cut(s)	97, 408
DdeI	CTNAG	3 cut(s)	148, 159, 191
DpnI	GATC	4 cut(s)	60, 81, 422, 456
DpnII	GATC	4 cut(s)	58, 79, 420, 454
DraI	TTTAAA	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	57
FaeI	CATG	6 cut(s)	11, 35, 46, 59, 182, 249
FaiI	YATR	9 cut(s)	9, 33, 44, 57, 165, 180, 247, 466, 502
FalI	AAGNNNNNCTT	4 cut(s)	410, 442, 444, 476
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	6 cut(s)	7, 31, 42, 55, 178, 245
Fnu4HI	GCNGC	2 cut(s)	138, 215
FokI	GGATG	2 cut(s)	372, 449
Fsp4HI	GCNGC	2 cut(s)	138, 215
GluI	GCNGC	2 cut(s)	138, 215
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	6 cut(s)	11, 35, 46, 59, 182, 249
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	90, 288, 329
Hpy188III	TCNNGA	5 cut(s)	77, 179, 277, 452, 470
HpyCH4III	ACNGT	2 cut(s)	258, 284
HpyCH4V	TGCA	4 cut(s)	55, 140, 341, 413
HpyF3I	CTNAG	3 cut(s)	148, 159, 191
Hsp92II	CATG	6 cut(s)	11, 35, 46, 59, 182, 249
Kzo9I	GATC	4 cut(s)	58, 79, 420, 454
LmnI	GCTCC	2 cut(s)	9, 497
LpnPI	CCDG	8 cut(s)	90, 134, 140, 156, 262, 364, 464, 483
Lsp1109I	GCAGC	2 cut(s)	124, 226
LweI	GCATC	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	4 cut(s)	60, 81, 422, 456
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	4 cut(s)	58, 79, 420, 454
MboII	GAAGA	2 cut(s)	197, 430
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	420
MluCI	AATT	4 cut(s)	91, 299, 312, 323
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	5 cut(s)	119, 175, 204, 240, 434
Mph1103I	ATGCAT	1 cut(s)	57
MseI	TTAA	2 cut(s)	68, 344
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	104
MvnI	CGCG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	58, 79, 420, 454
NlaIII	CATG	6 cut(s)	11, 35, 46, 59, 182, 249
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	1 cut(s)	249
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	139, 216
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PscI	ACATGT	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	2 cut(s)	98, 409
RsaNI	GTAC	2 cut(s)	97, 408
SaqAI	TTAA	2 cut(s)	68, 344
SatI	GCNGC	2 cut(s)	138, 215
Sau3AI	GATC	4 cut(s)	58, 79, 420, 454
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	7 cut(s)	139, 175, 192, 219, 244, 276, 390
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	2 cut(s)	138, 476
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	91, 299, 312, 323
SsiI	CCGC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	258, 284
TasI	AATT	4 cut(s)	91, 299, 312, 323
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	68, 344
Tru9I	TTAA	2 cut(s)	68, 344
TscAI	CASTG	2 cut(s)	132, 343
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	137, 214
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	26, 279
TspRI	CASTG	2 cut(s)	132, 343
VpaK11BI	GGWCC	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	3 cut(s)	91, 312, 323
XceI	RCATGY	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.