Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007627

Physical Location & Seq

Genomic Coordinates Forward (+)

73401786 .. 73402472

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0545300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACAATGCCTCGGCAGAAGAAGGATTGGTATTTGTACATGATTGTTAGTAATTGGGGGAGTAAGTCTGAGATATGGCGTCTTAATATAGATGAATTCTGCAGAAAGAGGAGCTCTCTATTTGAGCTTATGCATGATTTTGGATCTTTTGATGAATCCTGTTTCGGAACTTGTGTCCAAACTTGTATAACTTTGGGTCCCAATTTGTATATGGTGAATTCTCAAAACAAGATTGAGGGTTATTTTTTTGATCCGGCTGACCCAGATGGTCCATGCATCCGCCGCTTGGAGCATGCCGCCATTCCAAGTCTAGTTGATCCCAGATTGTTCATGTACGGAGAGAATGTCATCGTCTGCACCATTGAGAACAAAATTTATGTTCTTGCCAAATATGCTCATGAAGTTGAGGATAATCATCAGCAGCCTCCCCTCTTTAAGGTTTATGATCCTCTTAGCCGAACCTGGAAACATCTCCCTAATCCTCCCTTCTTCAATAAATTAGAACAATCATACACTAACTATAGTGGGAGAGAACACTTTGTTTGGGGCCACAAGCTTGGTGTAAGGCATTCGCATGATGAGTCATATATTTTTGACACTCGCCAACAGAAATGGGCGTATTACAGAAGAAAAGATGACTTGAAAAGAAGAGACAGCACGGAAGACGACTGCACCACCTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

228

Amino Acids

27.09

Weight (kDa)

6.5

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	113 - 213	3.6e-07	FKB95, Kelch-repeats domain
DUF1668	PF07893	115 - 206	2.4e-06	Protein of unknown function (DUF1668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14720 AT2G14720 AT2G14740 AT2G14740 AT3G52850
fragaria_vesca	FvH4_2g04230 FvH4_2g04230 FvH4_2g04230
malus_domestica	MD05G1099000.v1.1 MD10G1105000.v1.1
prunus_persica	Prupe.8G143700_v2.0.a1 Prupe.8G143700_v2.0.a1
pyrus_communis	pycom05g09820 pycom10g09040
rosa_chinensis	RchiOBHm_Chr6g0253651
rosa_laevigata	RLG00000014996
rosa_multiflora	Rmu_sc0000331.1_g000012
rosa_roxburghii	Rroxscaffold_7G00211730
rosa_rugosa	Rorug05G0545300
rosa_samantha	Rh6AG061000 Rh6BG054800 Rh6CG054400 Rh6DG051900
rosa_wichuraiana	Rw6G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	280, 283, 297
AclWI	GGATC	4 cut(s)	151, 245, 311, 440
AcsI	RAATTY	3 cut(s)	95, 217, 372
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	2 cut(s)	38, 335
AfiI	CCNNNNNNNGG	2 cut(s)	286, 436
AgsI	TTSAA	2 cut(s)	493, 643
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	114, 127, 556
AluI	AGCT	3 cut(s)	114, 127, 556
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	4 cut(s)	151, 245, 311, 440
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	3 cut(s)	95, 217, 372
AspS9I	GGNCC	3 cut(s)	197, 269, 547
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	197, 269
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	2 cut(s)	100, 520
BisI	GCNGC	3 cut(s)	283, 297, 422
BlsI	GCNGC	3 cut(s)	284, 298, 423
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	2 cut(s)	197, 269
BmgT120I	GGNCC	3 cut(s)	197, 269, 547
BmiI	GGNNCC	3 cut(s)	198, 199, 548
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 436
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	276, 680
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	286, 436
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	433
BsgI	GTGCAG	2 cut(s)	340, 655
BshFI	GGCC	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	286, 436
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	143, 250, 316, 445
BspACI	CCGC	3 cut(s)	280, 283, 297
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	198, 199, 548
BspMAI	CTGCAG	1 cut(s)	104
BspPI	GGATC	4 cut(s)	151, 245, 311, 440
BsrGI	TGTACA	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	4 cut(s)	143, 250, 316, 445
BssNI	GRCGYC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	79
BstAUI	TGTACA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	69, 452
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	276, 680
BstKTI	GATC	4 cut(s)	146, 253, 319, 448
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	4 cut(s)	143, 250, 316, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 392
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	2 cut(s)	100, 520
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	276, 680
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	3 cut(s)	197, 269, 547
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	37, 334
CviAII	CATG	7 cut(s)	40, 134, 273, 293, 331, 398, 575
CviJI	RGCY	7 cut(s)	114, 127, 257, 424, 456, 549, 556
CviKI_1	RGCY	7 cut(s)	114, 127, 257, 424, 456, 549, 556
CviQI	GTAC	2 cut(s)	37, 334
DdeI	CTNAG	2 cut(s)	69, 452
DpnI	GATC	4 cut(s)	145, 252, 318, 447
DpnII	GATC	4 cut(s)	143, 250, 316, 445
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	197, 269
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRI	GAATTC	2 cut(s)	95, 217
EcoRII	CCWGG	1 cut(s)	461
EcoT22I	ATGCAT	2 cut(s)	135, 278
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	7 cut(s)	43, 137, 276, 296, 334, 401, 578
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	7 cut(s)	39, 133, 272, 292, 330, 397, 574
Fnu4HI	GCNGC	3 cut(s)	283, 297, 422
FokI	GGATG	2 cut(s)	263, 667
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	283, 297, 422
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	283, 297, 422
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	7 cut(s)	43, 137, 276, 296, 334, 401, 578
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	2 cut(s)	155, 581
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	70, 167
Hpy188III	TCNNGA	2 cut(s)	398, 684
HpyAV	CCTTC	2 cut(s)	16, 496
HpyCH4V	TGCA	5 cut(s)	102, 133, 276, 357, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 392
HpyF3I	CTNAG	2 cut(s)	69, 452
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	7 cut(s)	43, 137, 276, 296, 334, 401, 578
KflI	GGGWCCC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	143, 250, 316, 445
LmnI	GCTCC	2 cut(s)	111, 289
LpnPI	CCDG	6 cut(s)	172, 267, 276, 334, 448, 475
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	311
MalI	GATC	4 cut(s)	145, 252, 318, 447
MboI	GATC	4 cut(s)	143, 250, 316, 445
MboII	GAAGA	5 cut(s)	31, 481, 639, 660, 674
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	6 cut(s)	52, 95, 202, 217, 372, 497
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	8 cut(s)	21, 102, 229, 400, 435, 440, 459, 492
Mph1103I	ATGCAT	2 cut(s)	135, 278
MseI	TTAA	2 cut(s)	84, 435
MslI	CAYNNNNRTG	1 cut(s)	573
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	463
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	282, 392
NdeII	GATC	4 cut(s)	143, 250, 316, 445
NlaIII	CATG	7 cut(s)	43, 137, 276, 296, 334, 401, 578
NlaIV	GGNNCC	3 cut(s)	198, 199, 548
NsiI	ATGCAT	2 cut(s)	135, 278
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	397
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	284, 298, 423
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PpuMI	RGGWCCY	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	198, 199, 548
PspPI	GGNCC	3 cut(s)	197, 269, 547
PspPPI	RGGWCCY	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	38, 335
RsaNI	GTAC	2 cut(s)	37, 334
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	84, 435
SatI	GCNGC	3 cut(s)	283, 297, 422
Sau3AI	GATC	4 cut(s)	143, 250, 316, 445
Sau96I	GGNCC	3 cut(s)	197, 269, 547
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	116, 129, 441, 464, 558, 680
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	2 cut(s)	100, 520
SinI	GGWCC	2 cut(s)	197, 269
SmiMI	CAYNNNNRTG	1 cut(s)	573
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	6 cut(s)	52, 95, 202, 217, 372, 497
SsiI	CCGC	3 cut(s)	280, 283, 297
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	461
TasI	AATT	6 cut(s)	52, 95, 202, 217, 372, 497
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	2 cut(s)	285, 299
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	84, 435
Tru9I	TTAA	2 cut(s)	84, 435
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	4 cut(s)	108, 168, 319, 414
TspGWI	ACGGA	2 cut(s)	351, 674
VpaK11BI	GGWCC	2 cut(s)	197, 269
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	3 cut(s)	95, 217, 372
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	2 cut(s)	135, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.