Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007627

Physical Location & Seq

Genomic Coordinates Reverse (-)

9113672 .. 9121419

Gene Structure 7748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG061000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGACACACCAGAAGAAGATATTTCAACTGCCAAATACATTGAAAACATAACTATACCATCTGCACTCATTGAAAAAAGTTTTGGTCAAACATTGAAGAAGGCCATCAGTTCTGGTGATATGGTGAATGTGTACCTTGACTGGAGAGAATCTGTTCCTCACCCAGATGATCGTGTGGAATATGAACTATGGACCAACAGTAATGATGAATGTGGGGTTAAGTGTGACATGTTGATGGAATTTACAAAGGAGTTTAGGGGTGCAGCCCAGATACTTGAAAAAGGGGGTTACACTCAGTTCACACCGCATTATATAACTTGGTACTGTCCTAAGGCATTCACCTTGAGCAAACAGTGCAAATCTCAGTGTATCAATCATGGAAGATATTGTGCTCCTGACCCTGAACAAGACTTCAGCACTGGTTACGAAGGGAAAGATGTGGTTCTTGAAAATTTAAGGCAGCTGTGTGTTTTTAAAGTAGCTAATGAGACTCGAAAGCCTTGGGTATGGTGGGACTATGTGACTGATTTTCAAATCAGATGTCCAATGAAAGAGAAAAAATACAACAAGGAATGTGCTGAGGCTGTCATTAAGTCTCTTGGGCTTGATAGTAAGAAGATCGACAAGTGTATGGGAAACTCAGATGCAGACTCTGAAAATCCTGTTCTGAAAGAGGAGCAAGATGCTCAGGTTGGGAAGGGAACAAGAGGTGATGTGACCATATTGCCTACACTTGTTGTCAATAATCGACAATACCGAGGAAAGTTGGCAAAAAGTGCAGTTCTGAAGGCCATCTGTTCTGGTTTTGAAGAAACTACTGAGCCAGCTGTTTGCTTGAGTACTGATGTTGAGACAAATGAGTGTTTGGACAATAATGGTGGTTGCTGGCAAAATAAAGCTGCCAACATTACAGCCTGCAAGGATACCTTTCGTGGGAGGGTATGTGAGTGCCCTCTCGTTGATGGTGTGCAGTTCAAAGGAGATGGTTACACTACCTGTGAAGCAAGTGGGCCTGGGAGGTGCAAGGTAAACAATGGAGGTTGTTGGCATGAAGCTCGAGATGGGCATGCATTCTCTGCTTGTACAGATGATGGAGGGGTGCAATGCAAGTGTCCTCCTGGATTTAAAGGTGATGGTGTGAAAACTTGTGAAGATATCAATGAATGCAAAGAGAAGAAAGTCTGTCAGTGCCCTGAATGCTCCTGTAAAGATACCTGGGGAAGTTATGACTGCTCATGTAGTGGAAATCTTTTGTATATCAAAGATCATGACACCTGCATAAGCAAGACTTCTGGAGGATCAAAATCATCTGCATGGGCTGCTGTGTGGGTTATTTTAATTGGCTTGGCTATGGCTTCTGGTGGGGCATATCTTGTGTACAAATATCGATTACGGTCATACATGGATTCAGAAATTAGAGCTATAATGGCACAGTATATGCCTCTGGACAGCCAAGCTGAAGTTCCCAATCATGTGAATGATGAGCATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

497

Amino Acids

55.24

Weight (kDa)

5.24

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VSR_TRX	PF25011	59 - 266	1.3e-104	Vacuolar sorting receptor thioredoxin-like domain
cEGF	PF12662	367 - 388	2.9e-08	Complement Clr-like EGF-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14720 AT2G14720 AT2G14740 AT2G14740 AT3G52850
fragaria_vesca	FvH4_2g04230 FvH4_2g04230 FvH4_2g04230
malus_domestica	MD05G1099000.v1.1 MD10G1105000.v1.1
prunus_persica	Prupe.8G143700_v2.0.a1 Prupe.8G143700_v2.0.a1
pyrus_communis	pycom05g09820 pycom10g09040
rosa_chinensis	RchiOBHm_Chr6g0253651
rosa_laevigata	RLG00000014996
rosa_multiflora	Rmu_sc0000331.1_g000012
rosa_roxburghii	Rroxscaffold_7G00211730
rosa_rugosa	Rorug05G0545300
rosa_samantha	Rh6AG061000 Rh6BG054800 Rh6CG054400 Rh6DG051900
rosa_wichuraiana	Rw6G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1283
Acc36I	ACCTGC	1 cut(s)	1283
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	1306
AcsI	RAATTY	2 cut(s)	239, 451
AcuI	CTGAAG	3 cut(s)	397, 806, 1479
AfaI	GTAC	5 cut(s)	134, 323, 841, 1084, 1379
AfiI	CCNNNNNNNGG	1 cut(s)	933
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	9 cut(s)	27, 44, 74, 97, 278, 449, 533, 809, 976
AjnI	CCWGG	3 cut(s)	1012, 1117, 1214
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 1446, 1478
AluBI	AGCT	7 cut(s)	463, 482, 827, 899, 1055, 1421, 1457
AluI	AGCT	7 cut(s)	463, 482, 827, 899, 1055, 1421, 1457
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	3 cut(s)	482, 600, 845
AlwI	GGATC	1 cut(s)	1306
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	1056
AoxI	GGCC	3 cut(s)	102, 789, 1010
ApeKI	GCWGC	4 cut(s)	263, 460, 899, 1319
ApoI	RAATTY	2 cut(s)	239, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	192, 1010
AsuHPI	GGTGA	6 cut(s)	128, 136, 152, 331, 722, 1142
AvaI	CYCGRG	1 cut(s)	1056
AvaII	GGWCC	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	2 cut(s)	953, 1193
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	4 cut(s)	275, 472, 886, 1306
BccI	CCATC	9 cut(s)	67, 113, 229, 800, 956, 977, 1055, 1085, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	3 cut(s)	1014, 1119, 1216
BciVI	GTATCC	1 cut(s)	916
BcoDI	GTCTC	3 cut(s)	482, 600, 845
BfuAI	ACCTGC	1 cut(s)	1283
BfuI	GTATCC	1 cut(s)	916
BisI	GCNGC	4 cut(s)	264, 461, 900, 1320
BlsI	GCNGC	4 cut(s)	265, 462, 901, 1321
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	3 cut(s)	1014, 1119, 1216
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	1056
BmgT120I	GGNCC	2 cut(s)	192, 1010
BmrFI	CCNGG	3 cut(s)	1014, 1119, 1216
BmsI	GCATC	2 cut(s)	634, 673
BpmI	CTGGAG	2 cut(s)	163, 1314
Bpu10I	CCTNAGC	2 cut(s)	579, 687
BpuEI	CTTGAG	2 cut(s)	364, 856
Bsa29I	ATCGAT	1 cut(s)	1387
BsaBI	GATNNNNATC	1 cut(s)	1303
BsaJI	CCNNGG	4 cut(s)	500, 757, 1013, 1215
BsaXI	ACNNNNNCTCC	2 cut(s)	928, 958
Bsc4I	CCNNNNNNNGG	1 cut(s)	933
Bse1I	ACTGG	2 cut(s)	146, 424
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	1109
Bse8I	GATNNNNATC	1 cut(s)	1303
BseBI	CCWGG	3 cut(s)	1014, 1119, 1216
BseCI	ATCGAT	1 cut(s)	1387
BseDI	CCNNGG	4 cut(s)	500, 757, 1013, 1215
BseJI	GATNNNNATC	1 cut(s)	1303
BseLI	CCNNNNNNNGG	1 cut(s)	933
BseMI	GCAATG	1 cut(s)	1109
BseMII	CTCAG	6 cut(s)	308, 377, 570, 654, 701, 810
BseNI	ACTGG	2 cut(s)	146, 424
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	2 cut(s)	953, 1193
BseXI	GCAGC	4 cut(s)	275, 472, 886, 1306
BsgI	GTGCAG	4 cut(s)	48, 282, 798, 989
BshFI	GGCC	3 cut(s)	104, 791, 1012
BshVI	ATCGAT	1 cut(s)	1387
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	933
BsmAI	GTCTC	3 cut(s)	482, 600, 845
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	4 cut(s)	335, 1070, 1169, 1202
BsnI	GGCC	3 cut(s)	104, 791, 1012
BsoBI	CYCGRG	1 cut(s)	1056
Bsp1286I	GDGCHC	3 cut(s)	394, 953, 1193
Bsp1407I	TGTACA	2 cut(s)	1082, 1377
Bsp143I	GATC	4 cut(s)	169, 618, 1264, 1298
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	3 cut(s)	104, 791, 1012
BspCNI	CTCAG	6 cut(s)	307, 376, 571, 653, 700, 811
BspDI	ATCGAT	1 cut(s)	1387
BspHI	TCATGA	1 cut(s)	1267
BspMI	ACCTGC	1 cut(s)	1283
BspPI	GGATC	1 cut(s)	1306
BsrDI	GCAATG	1 cut(s)	1109
BsrGI	TGTACA	2 cut(s)	1082, 1377
BsrI	ACTGG	2 cut(s)	146, 424
BssECI	CCNNGG	4 cut(s)	500, 757, 1013, 1215
BssMI	GATC	4 cut(s)	169, 618, 1264, 1298
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	3 cut(s)	1014, 1119, 1216
Bst4CI	ACNGT	5 cut(s)	200, 326, 354, 1395, 1434
BstAPI	GCANNNNNTGC	4 cut(s)	354, 776, 1076, 1319
BstAUI	TGTACA	2 cut(s)	1082, 1377
BstC8I	GCNNGC	5 cut(s)	825, 887, 916, 1068, 1488
BstDEI	CTNAG	7 cut(s)	294, 330, 363, 579, 640, 687, 819
BstKTI	GATC	4 cut(s)	172, 621, 1267, 1301
BstMAI	GTCTC	3 cut(s)	482, 600, 845
BstMBI	GATC	4 cut(s)	169, 618, 1264, 1298
BstMWI	GCNNNNNNNGC	6 cut(s)	354, 776, 1076, 1197, 1319, 1427
BstNI	CCWGG	3 cut(s)	1014, 1119, 1216
BstNSI	RCATGY	3 cut(s)	232, 1070, 1490
BstSCI	CCNGG	3 cut(s)	1012, 1117, 1214
BstSLI	GKGCMC	2 cut(s)	953, 1193
BstV1I	GCAGC	4 cut(s)	275, 472, 886, 1306
Bsu15I	ATCGAT	1 cut(s)	1387
Bsu36I	CCTNAGG	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	104, 791, 1012
BsuTUI	ATCGAT	1 cut(s)	1387
BtsIMutI	CAGTG	4 cut(s)	359, 371, 417, 1193
BveI	ACCTGC	1 cut(s)	1283
Cac8I	GCNNGC	5 cut(s)	825, 887, 916, 1068, 1488
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	1267
Cfr13I	GGNCC	2 cut(s)	192, 1010
ClaI	ATCGAT	1 cut(s)	1387
Csp6I	GTAC	5 cut(s)	133, 322, 840, 1083, 1378
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviQI	GTAC	5 cut(s)	133, 322, 840, 1083, 1378
DdeI	CTNAG	7 cut(s)	294, 330, 363, 579, 640, 687, 819
DpnI	GATC	4 cut(s)	171, 620, 1266, 1300
DpnII	GATC	4 cut(s)	169, 618, 1264, 1298
DraI	TTTAAA	2 cut(s)	475, 1126
Eco130I	CCWWGG	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	1156
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	3 cut(s)	397, 806, 1479
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	1056
EcoRII	CCWGG	3 cut(s)	1012, 1117, 1214
EcoRV	GATATC	1 cut(s)	1156
EcoT14I	CCWWGG	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	1072
ErhI	CCWWGG	1 cut(s)	500
FalI	AAGNNNNNCTT	4 cut(s)	911, 943, 1273, 1305
FaqI	GGGAC	1 cut(s)	527
Fnu4HI	GCNGC	4 cut(s)	264, 461, 900, 1320
Fsp4HI	GCNGC	4 cut(s)	264, 461, 900, 1320
GluI	GCNGC	4 cut(s)	264, 461, 900, 1320
GsuI	CTGGAG	2 cut(s)	163, 1314
HaeIII	GGCC	3 cut(s)	104, 791, 1012
HinfI	GANTC	4 cut(s)	149, 490, 650, 1406
HphI	GGTGA	6 cut(s)	128, 136, 152, 331, 722, 1142
Hpy166II	GTNNAC	4 cut(s)	133, 300, 1030, 1378
Hpy188I	TCNGA	6 cut(s)	539, 643, 655, 669, 786, 1411
Hpy188III	TCNNGA	6 cut(s)	395, 446, 1058, 1268, 1293, 1445
Hpy8I	GTNNAC	4 cut(s)	133, 300, 1030, 1378
HpyAV	CCTTC	4 cut(s)	94, 422, 691, 781
HpyCH4III	ACNGT	5 cut(s)	200, 326, 354, 1395, 1434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	354, 776, 1076, 1197, 1319, 1427
HpyF3I	CTNAG	7 cut(s)	294, 330, 363, 579, 640, 687, 819
Kzo9I	GATC	4 cut(s)	169, 618, 1264, 1298
LmnI	GCTCC	3 cut(s)	397, 676, 1205
Lsp1109I	GCAGC	4 cut(s)	275, 472, 886, 1306
LweI	GCATC	2 cut(s)	634, 673
MaeIII	GTNAC	6 cut(s)	224, 287, 422, 520, 715, 986
MalI	GATC	4 cut(s)	171, 620, 1266, 1300
MboI	GATC	4 cut(s)	169, 618, 1264, 1298
MboII	GAAGA	8 cut(s)	26, 29, 109, 393, 628, 821, 1163, 1186
MhlI	GDGCHC	3 cut(s)	394, 953, 1193
MluCI	AATT	4 cut(s)	239, 451, 1338, 1413
MlyI	GAGTC	2 cut(s)	484, 644
Mph1103I	ATGCAT	1 cut(s)	1072
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	6 cut(s)	219, 455, 474, 591, 1125, 1337
MslI	CAYNNNNRTG	4 cut(s)	165, 233, 1312, 1476
MspA1I	CMGCKG	2 cut(s)	463, 827
MspR9I	CCNGG	3 cut(s)	1014, 1119, 1216
Mva1269I	GAATGC	4 cut(s)	335, 1070, 1169, 1202
MvaI	CCWGG	3 cut(s)	1014, 1119, 1216
MwoI	GCNNNNNNNGC	6 cut(s)	354, 776, 1076, 1197, 1319, 1427
NdeII	GATC	4 cut(s)	169, 618, 1264, 1298
NmuCI	GTSAC	3 cut(s)	224, 520, 715
NsiI	ATGCAT	1 cut(s)	1072
NspI	RCATGY	3 cut(s)	232, 1070, 1490
PaeI	GCATGC	2 cut(s)	1070, 1490
PaeR7I	CTCGAG	1 cut(s)	1056
PagI	TCATGA	1 cut(s)	1267
PaqCI	CACCTGC	1 cut(s)	1283
PciI	ACATGT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	754
PctI	GAATGC	4 cut(s)	335, 1070, 1169, 1202
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	149, 1406
PfoI	TCCNGGA	1 cut(s)	1117
PkrI	GCNGC	4 cut(s)	265, 462, 901, 1321
PleI	GAGTC	2 cut(s)	484, 644
PpsI	GAGTC	2 cut(s)	484, 644
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	1012, 1117, 1214
PspGI	CCWGG	3 cut(s)	1012, 1117, 1214
PspPI	GGNCC	2 cut(s)	192, 1010
PstNI	CAGNNNCTG	1 cut(s)	653
PvuII	CAGCTG	2 cut(s)	463, 827
RsaI	GTAC	5 cut(s)	134, 323, 841, 1084, 1379
RsaNI	GTAC	5 cut(s)	133, 322, 840, 1083, 1378
RseI	CAYNNNNRTG	4 cut(s)	165, 233, 1312, 1476
SaqAI	TTAA	6 cut(s)	219, 455, 474, 591, 1125, 1337
SatI	GCNGC	4 cut(s)	264, 461, 900, 1320
Sau3AI	GATC	4 cut(s)	169, 618, 1264, 1298
Sau96I	GGNCC	2 cut(s)	192, 1010
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	484, 644
ScrFI	CCNGG	3 cut(s)	1014, 1119, 1216
SduI	GDGCHC	3 cut(s)	394, 953, 1193
SfaNI	GCATC	2 cut(s)	634, 673
Sfr274I	CTCGAG	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	1056
SmiMI	CAYNNNNRTG	4 cut(s)	165, 233, 1312, 1476
SmlI	CTYRAG	3 cut(s)	343, 835, 1056
SmoI	CTYRAG	3 cut(s)	343, 835, 1056
SphI	GCATGC	2 cut(s)	1070, 1490
Sse9I	AATT	4 cut(s)	239, 451, 1338, 1413
SsiI	CCGC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	1012, 1117, 1214
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	5 cut(s)	200, 326, 354, 1395, 1434
TaqI	TCGA	5 cut(s)	493, 621, 748, 1057, 1387
TasI	AATT	4 cut(s)	239, 451, 1338, 1413
TatI	WGTACW	3 cut(s)	839, 1082, 1377
TfiI	GAWTC	2 cut(s)	149, 1406
Tru1I	TTAA	6 cut(s)	219, 455, 474, 591, 1125, 1337
Tru9I	TTAA	6 cut(s)	219, 455, 474, 591, 1125, 1337
TscAI	CASTG	4 cut(s)	359, 371, 424, 1193
TseFI	GTSAC	3 cut(s)	224, 520, 715
TseI	GCWGC	4 cut(s)	263, 460, 899, 1319
Tsp45I	GTSAC	3 cut(s)	224, 520, 715
TspDTI	ATGAA	5 cut(s)	198, 222, 563, 1065, 1176
TspRI	CASTG	4 cut(s)	359, 371, 424, 1193
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	2 cut(s)	239, 451
XceI	RCATGY	3 cut(s)	232, 1070, 1490
XhoI	CTCGAG	1 cut(s)	1056
XmnI	GAANNNNTTC	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	841
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.