Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015213

Physical Location & Seq

Genomic Coordinates Reverse (-)

76569453 .. 76570125

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0572600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAGAAGATAAGGAGAGGAAATAGGATCCTTATAATCTTGGACGACATTTGGGAGAGAATAGATTTGTCCAACATAGGAATTCCCAGCTTCCACGAGCTTCAAAGATGCAATTCCAAAGTCCTACTCACAACAAGAACACATAATGTTTGTCGTGCCATGAAGTGTCAATCAAACATTTCTCTTGATGTTTTATCAGAAGAAGATTCTTGGACCTTGTTTGTGAACAAAGCAAAAAAGTCTTTTGAGTCGATCAATTTTTATAATGTTGCAAGGGAGGTAGCTAGAGAATGTGCTGGTCTTCCAGTTGTGCTGATAGCAGTTGCGAAGGCACTTGGTGATAAGTGTTTGGATGACTGGGAGGAAGCAGCTCGACGATTAAGGGCTTCTCAAGCTGCCAACCCTGAAGATGGGAAAATTGTGTTCAATTGCATAAAATTGAGCTATGATTACTTAAAATCTGATGATGCCAGGTCATGCTTCTTGCTTTGTTGCCTATTCCCAGAAGACTATGATATCCAAATTGAAGACTTGCTAAACTATGGGATGGGGAAAGGATTGTTTCAAGATTCCAGCACAATGCATGATGCCAGAGCTAGTGCATATTCGGTAAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010167 GO:0016020 GO:0016491 GO:0016661 GO:0016662 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050421 GO:0050896 GO:0055114 GO:0098809 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

NIR_SIR NIR_SIR_ferr

Protein Analysis

206

Amino Acids

23.44

Weight (kDa)

5.96

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	6 - 79	1.2e-16	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15620
fragaria_vesca	FvH4_2g05960
malus_domestica	MD05G1081500.v1.1
prunus_persica	Prupe.8G126000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257431
rosa_laevigata	RLG00000014695
rosa_multiflora	Rmu_sc0000820.1_g000048 Rmu_sc0003301.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208660 Rroxscaffold_7G00208680
rosa_rugosa	Rorug05G0572600
rosa_samantha	Rh6AG090100 Rh6BG081600 Rh6CG078100 Rh6DG073900
rosa_wichuraiana	Rw6G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	35, 264
AclWI	GGATC	2 cut(s)	22, 35
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	4 cut(s)	104, 427, 527, 566
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	7 cut(s)	90, 100, 284, 371, 395, 444, 596
AluI	AGCT	7 cut(s)	90, 100, 284, 371, 395, 444, 596
AlwI	GGATC	2 cut(s)	22, 35
ApeKI	GCWGC	2 cut(s)	368, 395
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	95
BbsI	GAAGAC	3 cut(s)	293, 513, 534
BbvI	GCAGC	2 cut(s)	380, 382
BccI	CCATC	2 cut(s)	404, 541
BciT130I	CCWGG	1 cut(s)	472
BfaI	CTAG	2 cut(s)	285, 597
BisI	GCNGC	2 cut(s)	369, 396
BlsI	GCNGC	2 cut(s)	370, 397
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	472
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	3 cut(s)	98, 457, 577
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	3 cut(s)	293, 513, 534
BpuEI	CTTGAG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	305, 362
BseBI	CCWGG	1 cut(s)	472
BseGI	GGATG	2 cut(s)	358, 552
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	305, 362
BseXI	GCAGC	2 cut(s)	380, 382
BseYI	CCCAGC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	27, 252
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	22, 35
BsrI	ACTGG	2 cut(s)	305, 362
BssMI	GATC	2 cut(s)	27, 252
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	472
BstF5I	GGATG	2 cut(s)	358, 552
BstKTI	GATC	2 cut(s)	30, 255
BstMBI	GATC	2 cut(s)	27, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	380, 382
BstV2I	GAAGAC	3 cut(s)	293, 513, 534
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	358, 552
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	3 cut(s)	160, 477, 584
CviJI	RGCY	8 cut(s)	90, 100, 284, 371, 386, 395, 444, 596
CviKI_1	RGCY	8 cut(s)	90, 100, 284, 371, 386, 395, 444, 596
DpnI	GATC	2 cut(s)	29, 254
DpnII	GATC	2 cut(s)	27, 252
DraIII	CACNNNGTG	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	585
FaeI	CATG	3 cut(s)	163, 480, 587
FatI	CATG	3 cut(s)	159, 476, 583
Fnu4HI	GCNGC	2 cut(s)	369, 396
FokI	GGATG	2 cut(s)	365, 559
Fsp4HI	GCNGC	2 cut(s)	369, 396
FspBI	CTAG	2 cut(s)	285, 597
GluI	GCNGC	2 cut(s)	369, 396
GsaI	CCCAGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	163, 480, 587
HinfI	GANTC	3 cut(s)	206, 248, 569
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	199, 463
Hpy188III	TCNNGA	2 cut(s)	185, 566
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	322
HpyCH4V	TGCA	6 cut(s)	4, 111, 272, 432, 583, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
Hsp92II	CATG	3 cut(s)	163, 480, 587
Kzo9I	GATC	2 cut(s)	27, 252
Lsp1109I	GCAGC	2 cut(s)	380, 382
LweI	GCATC	3 cut(s)	98, 457, 577
MaeI	CTAG	2 cut(s)	285, 597
MalI	GATC	2 cut(s)	29, 254
MboI	GATC	2 cut(s)	27, 252
MboII	GAAGA	7 cut(s)	19, 212, 215, 293, 419, 518, 539
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	7 cut(s)	81, 112, 256, 417, 427, 437, 522
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	11, 271, 355
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	3 cut(s)	380, 455, 619
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	27, 252
NlaIII	CATG	3 cut(s)	163, 480, 587
NlaIV	GGNNCC	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	206, 569
PkrI	GCNGC	2 cut(s)	370, 397
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PsiI	TTATAA	2 cut(s)	35, 264
Psp6I	CCWGG	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	380, 455, 619
SatI	GCNGC	2 cut(s)	369, 396
Sau3AI	GATC	2 cut(s)	27, 252
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	472
SfaNI	GCATC	3 cut(s)	98, 457, 577
SinI	GGWCC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	7 cut(s)	81, 112, 256, 417, 427, 437, 522
SspMI	CTAG	2 cut(s)	285, 597
StyD4I	CCNGG	1 cut(s)	470
TaqI	TCGA	2 cut(s)	251, 373
TasI	AATT	7 cut(s)	81, 112, 256, 417, 427, 437, 522
TfiI	GAWTC	2 cut(s)	206, 569
Tru1I	TTAA	3 cut(s)	380, 455, 619
Tru9I	TTAA	3 cut(s)	380, 455, 619
TseI	GCWGC	2 cut(s)	368, 395
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	2 cut(s)	285, 597
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.