Rorug05G0593200

TPX2 (targeting protein for Xklp2) protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005580
Physical Location & Seq
Reverse (-)
79104871 .. 79108238
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0593200.1

Sequence Viewer

Length: 1350 bp
ATGGCGCAGAACCTTCTCCGCCTCCGGCGAAGCCTAAGCAGCAGCAGCAGCAGCCTCGTCGCAAATCTCCACCGTTCTCTATCGGCCACCTCCGCACTCTCCTCTGTCCCACGCTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCTCCTCCGCCGTTGTTCAATCTCTCCAATTCCGATTCCAATCTCGATCATTCAGGTCGTCCTCATTCTCTTCTGCACGGCCGCCTTACGGTAGCAACAACCAAAATGACGAGATTGGCCCCGACACCATACTCTTCGAAGGCTGCGATTACAACCACTGGCTCATCGTCATGGATTTCCCCAGAGATAACAAGCCTTCTCCAGAAGAGATGGTCAGAACTTATGAGGAAACCTGTGCCAGAGGCTTGAATATCAGTGTGGAAGAGGCAAAAAAGAAAATTTATGCTTGTAGCACAACAACGTATACAGGCTTTCAGGTGTTGATGACTGAGGAAGAGTCTGAGAAGTTTAATGGTGTATCTGGAGTTATTTTTGTGTTGCCCGATTCTTACATTGATCCACAAAACAAGGAGTATGGAGGAGACAAATATGAAAATGGGAAAATTACACCCAGACCGCCCCCATTTCAGTATGAGAGGCAGGGCTCAAGATACCGTGATCGTAACAGATACGAGCGACAAGGACCAATGCCAAATCAGCAAGGGAATTCCTCGTATGGCCAACAGGGTTCTCCACAAGGTGGAGGAAACAATAGGACTTCACAAAATTATCCACACCAGACTTATGCCCCACCAGGACAAGGGGAACACAGAGGTCATACACCAGTTAATTCCCCTGGAGGAAGGGACGCATATCAGCCAGGTAGAGGTCCAACTCCTTCATATCAGGGCAATTACAACCAACAGGTGCAAGGGAACAGACCACAAGGAGAGCAGAGTACATATGCTCCTCCTGGTCAAGGGGAATATAGGGGTAATGATGGGACTTATGGTTATGGGCAAGGTCCAAGCTCTGGAACTCATGGACATGGTTTGAGTGGGCTTCAAGGCCCGGGAACAGGTGGATCTTATGGGCAAGGACCGAGTGGTGGATCTTATGGGCAAGGACCGAGTGGTGGAGGTTATGGGCAAGGACCGAGTGCTGCAGGTTATGGTCAAGGACCGAGTGCTGGAAGTTATGGCCAAGGACCGAGAGCTGGGGCTTCTGGACAAGGACCCGTATCTAGTGCTCAAGTCCAAGGACCCAGTGCTGGCTACCCTGGGAATGGAGATCAGAGTTTCACCCAAGAGGAGCCAAGGAGAATGCAAGGAGAACAAACAAACTATGCATACATGGGACAGACAGGAACTGACCAAGGAAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

449

Amino Acids

47.93

Weight (kDa)

8.24

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 98 - 191 4e-36 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1118
AccB7I CCANNNNNTGG 2 cut(s) 722, 995
AccI GTMKAC 1 cut(s) 446
AciI CCGC 5 cut(s) 19, 93, 150, 224, 599
AclWI GGATC 3 cut(s) 533, 1054, 1081
AcoI YGGCCR 4 cut(s) 84, 221, 700, 1162
AcsI RAATTY 2 cut(s) 420, 688
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 1 cut(s) 922
AgsI TTSAA 3 cut(s) 161, 391, 1028
AjnI CCWGG 5 cut(s) 775, 817, 841, 934, 1240
AluBI AGCT 2 cut(s) 993, 1178
AluI AGCT 2 cut(s) 993, 1178
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 3 cut(s) 533, 1054, 1081
AlwNI CAGNNNCTG 1 cut(s) 1331
Ama87I CYCGRG 1 cut(s) 1033
AoxI GGCC 6 cut(s) 84, 221, 259, 700, 1030, 1162
ApeKI GCWGC 7 cut(s) 39, 42, 45, 48, 51, 285, 1124
ApoI RAATTY 2 cut(s) 420, 688
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 1034, 1035
AsuHPI GGTGA 1 cut(s) 1255
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 1033
BalI TGGCCA 2 cut(s) 702, 1164
BanII GRGCYC 1 cut(s) 629
Bbv12I GWGCWC 1 cut(s) 1213
BbvI GCAGC 7 cut(s) 51, 54, 57, 60, 63, 272, 1111
BccI CCATC 2 cut(s) 346, 956
BceAI ACGGC 2 cut(s) 137, 236
BcgI CGANNNNNNTGC 4 cut(s) 37, 40, 71, 74
BciT130I CCWGG 5 cut(s) 777, 819, 843, 936, 1242
BcnI CCSGG 2 cut(s) 1034, 1035
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 1 cut(s) 1206
BfmI CTRYAG 1 cut(s) 1125
BfuAI ACCTGC 1 cut(s) 1118
BisI GCNGC 8 cut(s) 40, 43, 46, 49, 52, 224, 286, 1125
BlsI GCNGC 8 cut(s) 41, 44, 47, 50, 53, 225, 287, 1126
Bme1390I CCNGG 7 cut(s) 777, 819, 843, 936, 1034, 1035, 1242
BmeT110I CYCGRG 1 cut(s) 1033
BmiI GGNNCC 4 cut(s) 262, 1198, 1225, 1275
BmrFI CCNGG 7 cut(s) 777, 819, 843, 936, 1034, 1035, 1242
BmrI ACTGGG 1 cut(s) 1221
BmuI ACTGGG 1 cut(s) 1221
BpmI CTGGAG 3 cut(s) 327, 525, 840
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 613, 1197
BpuMI CCSGG 2 cut(s) 1034, 1035
BsaBI GATNNNNATC 1 cut(s) 181
BsaJI CCNNGG 8 cut(s) 817, 1033, 1165, 1219, 1240, 1241, 1277, 1336
BsaXI ACNNNNNCTCC 2 cut(s) 913, 943
Bse1I ACTGG 3 cut(s) 305, 806, 1227
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 5 cut(s) 777, 819, 843, 936, 1242
BseDI CCNNGG 8 cut(s) 817, 1033, 1165, 1219, 1240, 1241, 1277, 1336
BseJI GATNNNNATC 1 cut(s) 181
BseMII CTCAG 2 cut(s) 462, 474
BseNI ACTGG 3 cut(s) 305, 806, 1227
BseRI GAGGAG 9 cut(s) 91, 106, 127, 130, 133, 136, 576, 921, 1286
BseX3I CGGCCG 1 cut(s) 221
BseXI GCAGC 7 cut(s) 51, 54, 57, 60, 63, 272, 1111
BseYI CCCAGC 1 cut(s) 1178
BsgI GTGCAG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 6 cut(s) 86, 223, 261, 702, 1032, 1164
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 1213
BsiHKCI CYCGRG 1 cut(s) 1033
BsiSI CCGG 2 cut(s) 25, 1034
BslFI GGGAC 4 cut(s) 92, 842, 979, 1332
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 4 cut(s) 92, 842, 979, 1332
BsmI GAATGC 1 cut(s) 1290
BsnI GGCC 6 cut(s) 86, 223, 261, 702, 1032, 1164
BsoBI CYCGRG 1 cut(s) 1033
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 629, 1213
Bsp143I GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
BspACI CCGC 5 cut(s) 19, 93, 150, 224, 599
BspANI GGCC 6 cut(s) 86, 223, 261, 702, 1032, 1164
BspCNI CTCAG 2 cut(s) 463, 475
BspLI GGNNCC 4 cut(s) 262, 1198, 1225, 1275
BspMAI CTGCAG 1 cut(s) 1129
BspMI ACCTGC 1 cut(s) 1118
BspPI GGATC 3 cut(s) 533, 1054, 1081
BspT104I TTCGAA 1 cut(s) 279
BsrI ACTGG 3 cut(s) 305, 806, 1227
BssECI CCNNGG 8 cut(s) 817, 1033, 1165, 1219, 1240, 1241, 1277, 1336
BssMI GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 4 cut(s) 1165, 1219, 1277, 1336
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 5 cut(s) 777, 819, 843, 936, 1242
Bst4CI ACNGT 3 cut(s) 74, 233, 638
Bst6I CTCTTC 6 cut(s) 124, 217, 281, 342, 399, 471
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 1234
BstDEI CTNAG 3 cut(s) 35, 471, 483
BstENI CCTNNNNNAGG 1 cut(s) 939
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 6 cut(s) 191, 541, 643, 1049, 1076, 1255
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 6 cut(s) 39, 45, 48, 51, 92, 679
BstNI CCWGG 5 cut(s) 777, 819, 843, 936, 1242
BstSCI CCNGG 7 cut(s) 775, 817, 841, 934, 1032, 1033, 1240
BstSFI CTRYAG 1 cut(s) 1125
BstV1I GCAGC 7 cut(s) 51, 54, 57, 60, 63, 272, 1111
BstX2I RGATCY 2 cut(s) 1046, 1073
BstYI RGATCY 2 cut(s) 1046, 1073
BstZ17I GTATAC 1 cut(s) 447
BstZI CGGCCG 1 cut(s) 221
BsuRI GGCC 6 cut(s) 86, 223, 261, 702, 1032, 1164
BtsIMutI CAGTG 3 cut(s) 298, 403, 1234
BveI ACCTGC 1 cut(s) 1118
Cac8I GCNNGC 1 cut(s) 1234
CaiI CAGNNNCTG 1 cut(s) 1331
CfoI GCGC 1 cut(s) 7
Cfr9I CCCGGG 1 cut(s) 1033
CseI GACGC 1 cut(s) 839
Csp6I GTAC 1 cut(s) 921
CviAII CATG 4 cut(s) 313, 1004, 1010, 1315
CviQI GTAC 1 cut(s) 921
DdeI CTNAG 3 cut(s) 35, 471, 483
DpnI GATC 6 cut(s) 190, 540, 642, 1048, 1075, 1254
DpnII GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
DraIII CACNNNGTG 1 cut(s) 722
EaeI YGGCCR 4 cut(s) 84, 221, 700, 1162
EagI CGGCCG 1 cut(s) 221
Eam1104I CTCTTC 6 cut(s) 124, 217, 281, 342, 399, 471
EarI CTCTTC 6 cut(s) 124, 217, 281, 342, 399, 471
EciI GGCGGA 2 cut(s) 8, 139
EclXI CGGCCG 1 cut(s) 221
Eco130I CCWWGG 4 cut(s) 1165, 1219, 1277, 1336
Eco24I GRGCYC 1 cut(s) 629
Eco52I CGGCCG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 1033
EcoNI CCTNNNNNAGG 1 cut(s) 939
EcoO109I RGGNCCY 2 cut(s) 1196, 1223
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 5 cut(s) 775, 817, 841, 934, 1240
EcoT14I CCWWGG 4 cut(s) 1165, 1219, 1277, 1336
EcoT22I ATGCAT 1 cut(s) 1312
EcoT38I GRGCYC 1 cut(s) 629
ErhI CCWWGG 4 cut(s) 1165, 1219, 1277, 1336
FaeI CATG 4 cut(s) 316, 1007, 1013, 1318
FaqI GGGAC 4 cut(s) 92, 842, 979, 1332
FatI CATG 4 cut(s) 312, 1003, 1009, 1314
FauNDI CATATG 1 cut(s) 925
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 8 cut(s) 40, 43, 46, 49, 52, 224, 286, 1125
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 8 cut(s) 40, 43, 46, 49, 52, 224, 286, 1125
FspBI CTAG 1 cut(s) 1206
GlaI GCGC 1 cut(s) 6
GluI GCNGC 8 cut(s) 40, 43, 46, 49, 52, 224, 286, 1125
GsaI CCCAGC 1 cut(s) 1182
GsuI CTGGAG 3 cut(s) 327, 525, 840
HaeIII GGCC 6 cut(s) 86, 223, 261, 702, 1032, 1164
HapII CCGG 2 cut(s) 25, 1034
HgaI GACGC 1 cut(s) 839
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 316, 1007, 1013, 1318
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 177, 479, 527
HpaII CCGG 2 cut(s) 25, 1034
HphI GGTGA 1 cut(s) 1255
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 4 cut(s) 176, 359, 484, 1257
Hpy188III TCNNGA 6 cut(s) 186, 344, 504, 630, 996, 1188
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 7 cut(s) 23, 135, 141, 275, 348, 819, 870
HpyCH4III ACNGT 3 cut(s) 74, 233, 638
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 5 cut(s) 218, 892, 1127, 1288, 1310
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 45, 48, 51, 92, 679
HpyF3I CTNAG 3 cut(s) 35, 471, 483
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 4 cut(s) 316, 1007, 1013, 1318
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
LmnI GCTCC 3 cut(s) 119, 934, 1273
Lsp1109I GCAGC 7 cut(s) 51, 54, 57, 60, 63, 272, 1111
MaeI CTAG 1 cut(s) 1206
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 644
MalI GATC 6 cut(s) 190, 540, 642, 1048, 1075, 1254
MboI GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
MboII GAAGA 6 cut(s) 111, 204, 268, 359, 416, 488
MflI RGATCY 2 cut(s) 1046, 1073
MhlI GDGCHC 2 cut(s) 629, 1213
MlsI TGGCCA 2 cut(s) 702, 1164
MluCI AATT 7 cut(s) 170, 420, 585, 688, 748, 811, 874
MluNI TGGCCA 2 cut(s) 702, 1164
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 878
Mox20I TGGCCA 2 cut(s) 702, 1164
Mph1103I ATGCAT 1 cut(s) 1312
MscI TGGCCA 2 cut(s) 702, 1164
MseI TTAA 2 cut(s) 492, 810
MslI CAYNNNNRTG 2 cut(s) 311, 1008
Msp20I TGGCCA 2 cut(s) 702, 1164
MspI CCGG 2 cut(s) 25, 1034
MspR9I CCNGG 7 cut(s) 777, 819, 843, 936, 1034, 1035, 1242
Mva1269I GAATGC 1 cut(s) 1290
MvaI CCWGG 5 cut(s) 777, 819, 843, 936, 1242
MwoI GCNNNNNNNGC 6 cut(s) 39, 45, 48, 51, 92, 679
NciI CCSGG 2 cut(s) 1034, 1035
NdeI CATATG 1 cut(s) 925
NdeII GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
NlaIII CATG 4 cut(s) 316, 1007, 1013, 1318
NlaIV GGNNCC 4 cut(s) 262, 1198, 1225, 1275
NsiI ATGCAT 1 cut(s) 1312
NspV TTCGAA 1 cut(s) 279
PasI CCCWGGG 1 cut(s) 1241
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 1290
PfeI GAWTC 2 cut(s) 177, 527
PflMI CCANNNNNTGG 2 cut(s) 722, 995
PkrI GCNGC 8 cut(s) 41, 44, 47, 50, 53, 225, 287, 1126
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 2 cut(s) 1196, 1223
Psp5II RGGWCCY 2 cut(s) 1196, 1223
Psp6I CCWGG 5 cut(s) 775, 817, 841, 934, 1240
PspFI CCCAGC 1 cut(s) 1178
PspGI CCWGG 5 cut(s) 775, 817, 841, 934, 1240
PspN4I GGNNCC 4 cut(s) 262, 1198, 1225, 1275
PspPPI RGGWCCY 2 cut(s) 1196, 1223
PstI CTGCAG 1 cut(s) 1129
PstNI CAGNNNCTG 1 cut(s) 1331
PsuI RGATCY 2 cut(s) 1046, 1073
RsaI GTAC 1 cut(s) 922
RsaNI GTAC 1 cut(s) 921
RseI CAYNNNNRTG 2 cut(s) 311, 1008
SaqAI TTAA 2 cut(s) 492, 810
SatI GCNGC 8 cut(s) 40, 43, 46, 49, 52, 224, 286, 1125
Sau3AI GATC 6 cut(s) 188, 538, 640, 1046, 1073, 1252
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 7 cut(s) 777, 819, 843, 936, 1034, 1035, 1242
SduI GDGCHC 2 cut(s) 629, 1213
SfcI CTRYAG 1 cut(s) 1125
SfuI TTCGAA 1 cut(s) 279
SmaI CCCGGG 1 cut(s) 1035
SmiMI CAYNNNNRTG 2 cut(s) 311, 1008
SmlI CTYRAG 2 cut(s) 628, 1212
SmoI CTYRAG 2 cut(s) 628, 1212
Sse9I AATT 7 cut(s) 170, 420, 585, 688, 748, 811, 874
SsiI CCGC 5 cut(s) 19, 93, 150, 224, 599
SspMI CTAG 1 cut(s) 1206
StyD4I CCNGG 7 cut(s) 775, 817, 841, 934, 1032, 1033, 1240
StyI CCWWGG 4 cut(s) 1165, 1219, 1277, 1336
TaaI ACNGT 3 cut(s) 74, 233, 638
TaiI ACGT 1 cut(s) 446
TaqI TCGA 2 cut(s) 187, 279
TaqII GACCGA 5 cut(s) 1078, 1105, 1132, 1159, 1186
TasI AATT 7 cut(s) 170, 420, 585, 688, 748, 811, 874
TatI WGTACW 1 cut(s) 920
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 2 cut(s) 177, 527
Tru1I TTAA 2 cut(s) 492, 810
Tru9I TTAA 2 cut(s) 492, 810
TscAI CASTG 3 cut(s) 305, 403, 1234
TseI GCWGC 7 cut(s) 39, 42, 45, 48, 51, 285, 1124
TspDTI ATGAA 2 cut(s) 588, 852
TspMI CCCGGG 1 cut(s) 1033
TspRI CASTG 3 cut(s) 305, 403, 1234
Van91I CCANNNNNTGG 2 cut(s) 722, 995
XagI CCTNNNNNAGG 1 cut(s) 939
XapI RAATTY 2 cut(s) 420, 688
XmaI CCCGGG 1 cut(s) 1033
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 1206
Zsp2I ATGCAT 1 cut(s) 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.