Rorug06G0071800
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008234
Physical Location & Seq
Forward (+)
9557317 .. 9562116
4800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0071800.1

Sequence Viewer

Length: 768 bp
ATGAAGACCTTATTCTTTCTCCTCCTACTCGGCACCGCCTCCGCCGACTGTTCTTTCTCCGACGGCGACACCGCCCCTCTAATTCTCCCTCGTCACGAAGTTTATGGAAATGGCCGAATCTTCGACATCACCCACCGTATCACCACGGCGATGCCGTCGTATTTCTCCCCGGACGGCATGCTGGGCCAGTTCCTGTGGCTCCCCCACAGCATGAAGAACGGCTCTATCGCAAACATGTCAGTTTTCAAGCTGCCTACTCACACCGGCACGCATGTTGATTCACCCGGACACTTCTTCGATCACTACCTCGATGCTGGCTTCGACGTCGATACGCTTGACTTGGAGGTGCTTAATGGTCCAGCATTGTTAGTTGATGTTCCGAGGGACAAGAACATAACTGCTGAAGTGATGAAGTCCTTAAATATTCCAAAGGGAGTACGTCGTGTGCTCTTCAGAACATTAAATACTGACAGATGGCTTATGTTCAAAAATCAGTTTGACACAAGCTATGTGGGATTCATGAAGGATGGAGCCGAGTGGTTAGTGGAGAACACAGATATCAAACTTGTTGGAATTGATTACTTATCTGTTGCTGCATTTGATGATTTGATTACATCCCACCTTGTTTTTCTAGAAAGCAGGGAAATCATCCTCGTGGAAGCCCTAAAACTTGATGACATCCAACCAGGAATATATTCTGTCCATTGCTTACCTTTGAGGTTGCAAGGTGCAGAAGGATCACCAATCCGATGCATTCTTATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007030 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010033 GO:0010152 GO:0010154 GO:0010227 GO:0010256 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0022402 GO:0022414 GO:0023052 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033612 GO:0033993 GO:0034293 GO:0036211 GO:0038023 GO:0042175 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046777 GO:0048229 GO:0048236 GO:0048316 GO:0048367 GO:0048437 GO:0048545 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0098827 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

255

Amino Acids

28.55

Weight (kDa)

5.4

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclase PF04199 41 - 197 2.7e-21 Putative cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 3 cut(s) 36, 42, 72
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 423, 436
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 1 cut(s) 438
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 247, 487
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 2 cut(s) 250, 507
AluI AGCT 2 cut(s) 250, 507
Alw21I GWGCWC 1 cut(s) 450
AlwI GGATC 1 cut(s) 745
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 2 cut(s) 112, 184
ApeKI GCWGC 2 cut(s) 250, 593
Asp700I GAANNNNTTC 1 cut(s) 694
AspS9I GGNCC 2 cut(s) 184, 356
AsuC2I CCSGG 2 cut(s) 170, 285
AsuHPI GGTGA 4 cut(s) 121, 133, 273, 732
AvaII GGWCC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 32
BauI CACGAG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 237, 580
BccI CCATC 2 cut(s) 468, 521
BceAI ACGGC 5 cut(s) 79, 139, 162, 190, 235
BciT130I CCWGG 1 cut(s) 687
BcnI CCSGG 2 cut(s) 170, 285
BfaI CTAG 1 cut(s) 632
BisI GCNGC 2 cut(s) 251, 594
BlsI GCNGC 2 cut(s) 252, 595
Bme1390I CCNGG 3 cut(s) 170, 285, 687
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 184, 356
BmiI GGNNCC 3 cut(s) 34, 200, 532
BmrFI CCNGG 3 cut(s) 170, 285, 687
BmsI GCATC 3 cut(s) 141, 301, 740
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 2 cut(s) 170, 285
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 144, 168, 380
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 703
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 3 cut(s) 144, 168, 380
BseGI GGATG 4 cut(s) 532, 614, 648, 678
BseMI GCAATG 1 cut(s) 703
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 2 cut(s) 237, 580
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 750
BshFI GGCC 2 cut(s) 114, 186
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 3 cut(s) 170, 264, 285
BslFI GGGAC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 2 cut(s) 114, 186
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 2 cut(s) 298, 737
BspACI CCGC 3 cut(s) 36, 42, 72
BspANI GGCC 2 cut(s) 114, 186
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 3 cut(s) 34, 200, 532
BspPI GGATC 1 cut(s) 745
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 144, 168, 380
BssMI GATC 2 cut(s) 298, 737
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 653
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 2 cut(s) 50, 137
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 3 cut(s) 179, 269, 316
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 532, 614, 648, 678
BstKTI GATC 2 cut(s) 301, 740
BstMBI GATC 2 cut(s) 298, 737
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 687
BstNSI RCATGY 3 cut(s) 181, 238, 275
BstSCI CCNGG 3 cut(s) 168, 283, 685
BstV1I GCAGC 2 cut(s) 237, 580
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 114, 186
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 4 cut(s) 532, 614, 648, 678
Cac8I GCNNGC 3 cut(s) 179, 269, 316
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 519
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 184, 356
Csp6I GTAC 1 cut(s) 437
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 5 cut(s) 178, 211, 235, 272, 520
CviQI GTAC 1 cut(s) 437
DpnI GATC 2 cut(s) 300, 739
DpnII GATC 2 cut(s) 298, 737
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 1 cut(s) 31
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 423, 436
EcoRII CCWGG 1 cut(s) 685
EcoRV GATATC 1 cut(s) 559
EcoT22I ATGCAT 1 cut(s) 755
FaeI CATG 5 cut(s) 181, 214, 238, 275, 523
FaqI GGGAC 1 cut(s) 398
FatI CATG 5 cut(s) 177, 210, 234, 271, 519
Fnu4HI GCNGC 2 cut(s) 251, 594
FokI GGATG 4 cut(s) 539, 601, 635, 665
Fsp4HI GCNGC 2 cut(s) 251, 594
FspBI CTAG 1 cut(s) 632
GluI GCNGC 2 cut(s) 251, 594
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 114, 186
HapII CCGG 3 cut(s) 170, 264, 285
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 5 cut(s) 181, 214, 238, 275, 523
HinfI GANTC 3 cut(s) 117, 278, 516
HpaII CCGG 3 cut(s) 170, 264, 285
HphI GGTGA 4 cut(s) 121, 133, 273, 732
Hpy188I TCNGA 4 cut(s) 61, 381, 455, 749
Hpy188III TCNNGA 3 cut(s) 95, 520, 632
Hpy99I CGWCG 5 cut(s) 65, 160, 326, 329, 444
HpyAV CCTTC 2 cut(s) 517, 728
HpyCH4III ACNGT 2 cut(s) 50, 137
HpyCH4IV ACGT 2 cut(s) 324, 439
HpyCH4V TGCA 4 cut(s) 596, 724, 731, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 324, 439
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 5 cut(s) 181, 214, 238, 275, 523
Kzo9I GATC 2 cut(s) 298, 737
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 2 cut(s) 204, 530
Lsp1109I GCAGC 2 cut(s) 237, 580
LweI GCATC 3 cut(s) 141, 301, 740
MaeI CTAG 1 cut(s) 632
MaeII ACGT 2 cut(s) 324, 439
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 300, 739
MboI GATC 2 cut(s) 298, 737
MboII GAAGA 5 cut(s) 16, 112, 226, 286, 442
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 81, 573
MmeI TCCRAC 3 cut(s) 84, 550, 706
MnlI CCTC 9 cut(s) 32, 49, 87, 99, 317, 337, 375, 662, 711
Mph1103I ATGCAT 1 cut(s) 755
MroXI GAANNNNTTC 1 cut(s) 694
MseI TTAA 3 cut(s) 351, 419, 461
MslI CAYNNNNRTG 2 cut(s) 149, 653
MspI CCGG 3 cut(s) 170, 264, 285
MspR9I CCNGG 3 cut(s) 170, 285, 687
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 2 cut(s) 170, 285
NdeII GATC 2 cut(s) 298, 737
NlaIII CATG 5 cut(s) 181, 214, 238, 275, 523
NlaIV GGNNCC 3 cut(s) 34, 200, 532
NmeAIII GCCGAG 2 cut(s) 9, 559
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 755
NspI RCATGY 3 cut(s) 181, 238, 275
PaeI GCATGC 1 cut(s) 181
PagI TCATGA 1 cut(s) 519
PciI ACATGT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PctI GAATGC 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 117, 278, 516
PkrI GCNGC 2 cut(s) 252, 595
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 3 cut(s) 34, 200, 532
PspPI GGNCC 2 cut(s) 184, 356
PsrI GAACNNNNNNTAC 2 cut(s) 448, 480
PstNI CAGNNNCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 2 cut(s) 149, 653
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 351, 419, 461
SatI GCNGC 2 cut(s) 251, 594
Sau3AI GATC 2 cut(s) 298, 737
Sau96I GGNCC 2 cut(s) 184, 356
ScrFI CCNGG 3 cut(s) 170, 285, 687
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 3 cut(s) 141, 301, 740
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 2 cut(s) 149, 653
SphI GCATGC 1 cut(s) 181
Sse9I AATT 2 cut(s) 81, 573
SsiI CCGC 3 cut(s) 36, 42, 72
SspI AATATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 168, 283, 685
TaaI ACNGT 2 cut(s) 50, 137
TaiI ACGT 2 cut(s) 327, 442
TaqI TCGA 5 cut(s) 123, 297, 309, 321, 327
TasI AATT 2 cut(s) 81, 573
TfiI GAWTC 3 cut(s) 117, 278, 516
Tru1I TTAA 3 cut(s) 351, 419, 461
Tru9I TTAA 3 cut(s) 351, 419, 461
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 250, 593
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 17, 227, 425, 508, 536
VpaK11BI GGWCC 1 cut(s) 356
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 3 cut(s) 181, 238, 275
XmnI GAANNNNTTC 1 cut(s) 694
XspI CTAG 1 cut(s) 632
ZraI GACGTC 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.