Rorug06G0211300

Sulfate transporter 3.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003114
Physical Location & Seq
Reverse (-)
33596217 .. 33596624
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0211300.1

Sequence Viewer

Length: 408 bp
ATGGAGAAGGAGAAGAATAAAGTGGTCATAGATCATTATAGGGTTCTTGGTTTACCGTCGGGTAAGGAAGTCACCAAGCTTACCGAGAAAGAGATTACAAAGGCGTACAGAGCAAAGGCTTTGCAGTTGCATCCAGACAAAAGGCCAAACGATCTCGATGCCAATGCCAAGTTTCAAAGGCTCAACTCATCCTATGCGATACTCAGCAATCCAAAAGCCCGGAAACAGTTCGACTCTTCTCTGAGACCCGAGAACAAGTCCTCGGAACCACTACCAACCTCTGAACCACCACCAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGGTTGGTTTGTTAATCTTTGTTTTAGCCCCCATCGTTTTTTCCGGAATCGAGATCCAGAAGCAGTACGTCGAATAG

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

9.05

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 78 1.6e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 374
AclWI GGATC 2 cut(s) 315, 379
AfaI GTAC 2 cut(s) 107, 398
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 2 cut(s) 315, 379
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 374
AoxI GGCC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 248
BccI CCATC 1 cut(s) 371
BcgI CGANNNNNNTGC 4 cut(s) 140, 146, 174, 180
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 220, 317
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 220, 317
BmsI GCATC 2 cut(s) 139, 148
BpuMI CCSGG 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 261, 316
BsaWI WCCGGW 1 cut(s) 374
BseAI TCCGGA 1 cut(s) 374
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 261, 316
BseGI GGATG 2 cut(s) 130, 188
BseMII CTCAG 2 cut(s) 217, 233
BshFI GGCC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 220, 375
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 248
Bsp13I TCCGGA 1 cut(s) 374
Bsp143I GATC 4 cut(s) 31, 151, 307, 384
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 216, 234
BspEI TCCGGA 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 2 cut(s) 315, 379
BspTNI GGTCTC 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 261, 316
BssMI GATC 4 cut(s) 31, 151, 307, 384
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 57, 228
Bst6I CTCTTC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 203, 242
BstF5I GGATG 2 cut(s) 130, 188
BstKTI GATC 4 cut(s) 34, 154, 310, 387
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 4 cut(s) 31, 151, 307, 384
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 218, 315
BstX2I RGATCY 2 cut(s) 307, 384
BstYI RGATCY 2 cut(s) 307, 384
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 130, 188
Csp6I GTAC 2 cut(s) 106, 397
CviJI RGCY 6 cut(s) 79, 119, 145, 181, 218, 359
CviKI_1 RGCY 6 cut(s) 79, 119, 145, 181, 218, 359
CviQI GTAC 2 cut(s) 106, 397
DdeI CTNAG 2 cut(s) 203, 242
DpnI GATC 4 cut(s) 33, 153, 309, 386
DpnII GATC 4 cut(s) 31, 151, 307, 384
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 315
FaiI YATR 3 cut(s) 29, 39, 195
FokI GGATG 2 cut(s) 117, 175
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 220, 375
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 233, 378
HpaII CCGG 2 cut(s) 220, 375
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 3 cut(s) 243, 265, 283
Hpy188III TCNNGA 6 cut(s) 134, 155, 311, 375, 382, 388
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 2 cut(s) 61, 404
HpyCH4III ACNGT 2 cut(s) 57, 228
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 124, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 203, 242
HpySE526I ACGT 1 cut(s) 399
Kpn2I TCCGGA 1 cut(s) 374
Kzo9I GATC 4 cut(s) 31, 151, 307, 384
LpnPI CCDG 6 cut(s) 147, 233, 302, 329, 388, 401
LweI GCATC 2 cut(s) 139, 148
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 70, 320
MalI GATC 4 cut(s) 33, 153, 309, 386
MboI GATC 4 cut(s) 31, 151, 307, 384
MboII GAAGA 2 cut(s) 25, 228
MflI RGATCY 2 cut(s) 307, 384
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 271, 289, 298
MroI TCCGGA 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 1 cut(s) 344
MspI CCGG 2 cut(s) 220, 375
MspR9I CCNGG 2 cut(s) 220, 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 220
NdeII GATC 4 cut(s) 31, 151, 307, 384
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 378
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 267
PsuI RGATCY 2 cut(s) 307, 384
RsaI GTAC 2 cut(s) 107, 398
RsaNI GTAC 2 cut(s) 106, 397
SaqAI TTAA 1 cut(s) 344
Sau3AI GATC 4 cut(s) 31, 151, 307, 384
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 220, 317
SetI ASST 3 cut(s) 81, 281, 402
SfaNI GCATC 2 cut(s) 139, 148
StyD4I CCNGG 2 cut(s) 218, 315
TaaI ACNGT 2 cut(s) 57, 228
TaiI ACGT 1 cut(s) 402
TaqI TCGA 4 cut(s) 156, 231, 381, 402
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.