Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012816

Physical Location & Seq

Genomic Coordinates Reverse (-)

34742214 .. 34743368

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTTCTTCAGGAGTTGAGGGAGACGATTATCGTTACTATTTGCATGGAGAAGAAGTGAAGAACACCAAATGGAGGTATGGTTCCCCACCAAACTATGATGTTGTCAACAAGCTCTTTCACGAAGGCAGAACCAAGATATGGCCTCCTGGATCACTAGAAGAACGAGTGCAGAACCTTGTAAAGACATGGGAAATGGAGTTGTTTCATAAGACAAGTGATGCAGACTATAAATCGCTTGATCCTAATAACTACACATTTAGCCTAAATGGAAGAAAAGGTATAAGTTTGGCAGAGAAGCGAAAGCTTGGAGGAGGCTACAACTCTTTGCTGCAAACCTCTTTGCCAAATGAGTTCCGGTGCTACAACCCGGCTGAAGAAACCGTGGATTCATCTCATCGGGCTTTAACAACAGCCTTCCCACGCGGTTTTGCTCTTGAGATTCTCCATGTGTATTCTGGTCCTCCAGAAATTGTGTACAAGTTCAGGCACTGGGGTTACATGGAAGGTCCCTTCAAAGGTCATGCCCCTACTGGAGAATTAGTTGAACTCTTTGGGATGGCAGTGTTTCAGTTGGATGAATCTGAGAAAGTTGTGAGTGTTGAGTTCTTTTTCGACCGTGGTGAACTTCTCGGGGGCCTTCTGAAGGGTGCAAGCATCGACAGTTCCAGTGAAGAGGTGGCACCAACTTGCCCATACTTGAGGAACACAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

238

Amino Acids

26.89

Weight (kDa)

5.56

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63150
fragaria_vesca	FvH4_2g23630
malus_domestica	MD03G1265800.v1.1 MD11G1286300.v1.1
prunus_persica	Prupe.8G241500_v2.0.a1 Prupe.8G241500_v2.0.a1
pyrus_communis	pycom03g21230 pycom11g25380
rosa_chinensis	RchiOBHm_Chr6g0291101
rosa_laevigata	RLG00000012144
rosa_multiflora	Rmu_sc0004642.1_g000016
rosa_roxburghii	Rroxscaffold_7G00176380
rosa_rugosa	Rorug06G0217500 Rorug06G0217600
rosa_samantha	Rh6AG327800 Rh6CG341500 Rh6DG328700
rosa_wichuraiana	Rw6G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	160, 236
AcuI	CTGAAG	2 cut(s)	396, 665
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	75, 141, 518, 646
AgsI	TTSAA	2 cut(s)	517, 548
AjnI	CCWGG	1 cut(s)	148
AloI	GAACNNNNNNTCC	2 cut(s)	67, 99
AluBI	AGCT	2 cut(s)	115, 307
AluI	AGCT	2 cut(s)	115, 307
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	160, 236
AlwNI	CAGNNNCTG	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	143, 637
ApeKI	GCWGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	461, 509, 637
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	461, 509
BanI	GGYRCC	1 cut(s)	682
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	150, 371
Bme18I	GGWCC	2 cut(s)	461, 509
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	3 cut(s)	461, 509, 637
BmiI	GGNNCC	4 cut(s)	85, 511, 638, 684
BmrFI	CCNGG	2 cut(s)	150, 371
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	211, 666
BmuI	ACTGGG	1 cut(s)	502
BpmI	CTGGAG	2 cut(s)	450, 555
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	384, 619
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 67, 72, 97, 528, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 141, 518, 646
Bse1I	ACTGG	3 cut(s)	497, 538, 669
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	384, 619
BseGI	GGATG	2 cut(s)	564, 583
BseLI	CCNNNNNNNGG	4 cut(s)	75, 141, 518, 646
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	497, 538, 669
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	145, 639
BshNI	GGYRCC	1 cut(s)	682
BsiEI	CGRYCG	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	358, 371
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	4 cut(s)	75, 141, 518, 646
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	145, 639
BsoBI	CYCGRG	1 cut(s)	632
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	152, 241
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	2 cut(s)	145, 639
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	4 cut(s)	85, 511, 638, 684
BspPI	GGATC	2 cut(s)	160, 236
BspT107I	GGYRCC	1 cut(s)	682
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	497, 538, 669
BssECI	CCNNGG	2 cut(s)	384, 619
BssMI	GATC	2 cut(s)	152, 241
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	385, 620, 665
Bst6I	CTCTTC	1 cut(s)	669
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	1 cut(s)	585
BstDSI	CCRYGG	2 cut(s)	384, 619
BstENI	CCTNNNNNAGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	564, 583
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	155, 244
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	2 cut(s)	152, 241
BstMCI	CGRYCG	1 cut(s)	619
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	148, 369
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	145, 639
BtgI	CCRYGG	2 cut(s)	384, 619
BtsCI	GGATG	2 cut(s)	564, 583
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	490, 570, 676
Cac8I	GCNNGC	1 cut(s)	655
CaiI	CAGNNNCTG	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	461, 509, 637
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	5 cut(s)	47, 189, 449, 502, 524
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	2 cut(s)	154, 243
DpnII	GATC	2 cut(s)	152, 241
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	461, 509
Eco57I	CTGAAG	2 cut(s)	396, 665
Eco88I	CYCGRG	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	644
EcoO109I	RGGNCCY	2 cut(s)	509, 637
EcoRII	CCWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	5 cut(s)	50, 192, 452, 505, 527
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	5 cut(s)	46, 188, 448, 501, 523
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	2 cut(s)	571, 590
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	2 cut(s)	450, 555
HaeIII	GGCC	2 cut(s)	145, 639
HapII	CCGG	2 cut(s)	358, 371
Hin1II	CATG	5 cut(s)	50, 192, 452, 505, 527
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	389, 442, 581
HpaII	CCGG	2 cut(s)	358, 371
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	109, 478, 626
Hpy188I	TCNGA	2 cut(s)	586, 645
Hpy188III	TCNNGA	4 cut(s)	12, 122, 437, 467
Hpy8I	GTNNAC	3 cut(s)	109, 478, 626
HpyAV	CCTTC	6 cut(s)	119, 427, 500, 523, 640, 650
HpyCH4III	ACNGT	3 cut(s)	385, 620, 665
HpyCH4V	TGCA	5 cut(s)	46, 172, 224, 334, 653
HpyF3I	CTNAG	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	50, 192, 452, 505, 527
Kzo9I	GATC	2 cut(s)	152, 241
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	211, 666
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	35, 497
MalI	GATC	2 cut(s)	154, 243
MboI	GATC	2 cut(s)	152, 241
MboII	GAAGA	6 cut(s)	65, 73, 173, 285, 389, 686
MluCI	AATT	2 cut(s)	471, 539
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	9 cut(s)	13, 69, 156, 305, 308, 349, 474, 670, 696
MseI	TTAA	1 cut(s)	407
MspI	CCGG	2 cut(s)	358, 371
MspR9I	CCNGG	2 cut(s)	150, 371
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	426
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	2 cut(s)	152, 241
NlaIII	CATG	5 cut(s)	50, 192, 452, 505, 527
NlaIV	GGNNCC	4 cut(s)	85, 511, 638, 684
PfeI	GAWTC	3 cut(s)	389, 442, 581
PflMI	CCANNNNNTGG	1 cut(s)	141
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	333
PpuMI	RGGWCCY	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	4 cut(s)	85, 511, 638, 684
PspPI	GGNCC	3 cut(s)	461, 509, 637
PspPPI	RGGWCCY	1 cut(s)	509
PstNI	CAGNNNCTG	1 cut(s)	492
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	2 cut(s)	152, 241
Sau96I	GGNCC	3 cut(s)	461, 509, 637
ScrFI	CCNGG	2 cut(s)	150, 371
SetI	ASST	9 cut(s)	80, 117, 180, 283, 309, 341, 511, 523, 681
SfaNI	GCATC	2 cut(s)	211, 666
SinI	GGWCC	2 cut(s)	461, 509
SmlI	CTYRAG	2 cut(s)	437, 700
SmoI	CTYRAG	2 cut(s)	437, 700
Sse9I	AATT	2 cut(s)	471, 539
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	148, 369
TaaI	ACNGT	3 cut(s)	385, 620, 665
TaqI	TCGA	2 cut(s)	615, 660
TasI	AATT	2 cut(s)	471, 539
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	389, 442, 581
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	3 cut(s)	497, 570, 676
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	197, 381, 594
TspRI	CASTG	3 cut(s)	497, 570, 676
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	461, 509
XagI	CCTNNNNNAGG	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	455, 676
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.