Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012816

Physical Location & Seq

Genomic Coordinates Reverse (-)

34761155 .. 34762339

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTCTACTTCCAACATGGAAGCTTCAGGTGTTGATCAGCGAGACAAGTATCGTTCTTACATGTATGGAGATGGAGAGAAGAACACACAATGGAGATCTGGTGCCCCTCCTAACTACGATGTTGTTAACAAGCTCTTTGAAGAAGGCAGAACCAAGATATGGCCAGCTGGGTCACTGGAAGAAAGAGTTCAGAACCTTTTGAAGACATACGAGATGGAGATGTCCCACAAAGCAAACCCTCAGGACTTCAAATCTGTTGATCCAGAAAAGTTCACTTTCGTCCAGAATGGGAAAGAACCACTGAGTATTGAAGATATTAAGAAAATGGGTGGAGTCTATAACGTGGATCTGCAAAGCTCTCTACCTGAGGAGTTTCAGATCTACAAACCAGCTGAGGAAACAGCAGAATCGTCCCATAAGCTTTTCACCACTACTTTTCCACGTGGATTTGCAATCGAGGTCCTTGAGGTCTATTCCGGTCCGCCGGTGATAGCCTACAAGTTCAGGCACTGGTCTTACATGGAAGGTCCTTTCAAAGGGTATGCCCCTACTGGAGAATTGGTTCAATTCTTCGGCATCGCAGTTTTCACGGTGGATGAGCAGATGAGAATTGTAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTATTGGAGGGCTGACGAAGGGTGGCAAAATTGAAAATTGTGGTGGAAATAGTGCAACCACAAGTAGTTGCCCTATCCTTAGGAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

5.3

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63150
fragaria_vesca	FvH4_2g23630
malus_domestica	MD03G1265800.v1.1 MD11G1286300.v1.1
prunus_persica	Prupe.8G241500_v2.0.a1 Prupe.8G241500_v2.0.a1
pyrus_communis	pycom03g21230 pycom11g25380
rosa_chinensis	RchiOBHm_Chr6g0291101
rosa_laevigata	RLG00000012144
rosa_multiflora	Rmu_sc0004642.1_g000016
rosa_roxburghii	Rroxscaffold_7G00176380
rosa_rugosa	Rorug06G0217500 Rorug06G0217600
rosa_samantha	Rh6AG327800 Rh6CG341500 Rh6DG328700
rosa_wichuraiana	Rw6G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	3 cut(s)	254, 354, 629
AcoI	YGGCCR	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	9
AcvI	CACGTG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	159, 536
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	7 cut(s)	140, 202, 250, 311, 535, 566, 680
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	6 cut(s)	23, 133, 167, 357, 392, 421
AluI	AGCT	6 cut(s)	23, 133, 167, 357, 392, 421
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	254, 354, 629
AlwNI	CAGNNNCTG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	186, 561
AspS9I	GGNCC	3 cut(s)	460, 479, 527
AsuHPI	GGTGA	2 cut(s)	418, 499
AvaII	GGWCC	3 cut(s)	460, 479, 527
AxyI	CCTNAGG	3 cut(s)	240, 366, 725
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	101
BbrPI	CACGTG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	393
BccI	CCATC	2 cut(s)	65, 208
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	639
BglII	AGATCT	2 cut(s)	95, 378
Bme18I	GGWCC	3 cut(s)	460, 479, 527
BmgT120I	GGNCC	3 cut(s)	460, 479, 527
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 536
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	3 cut(s)	180, 515, 556
Bse21I	CCTNAGG	3 cut(s)	240, 366, 725
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	159, 536
BseMII	CTCAG	4 cut(s)	254, 293, 357, 384
BseNI	ACTGG	3 cut(s)	180, 515, 556
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	477, 485
BslFI	GGGAC	2 cut(s)	208, 397
BslI	CCNNNNNNNGG	2 cut(s)	159, 536
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	208, 397
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	4 cut(s)	253, 294, 358, 385
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	3 cut(s)	254, 354, 629
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	180, 515, 556
BssAI	RCCGGY	1 cut(s)	484
BssMI	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
Bst4CI	ACNGT	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	5 cut(s)	240, 302, 366, 393, 725
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	6 cut(s)	37, 98, 262, 349, 381, 637
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
BstNSI	RCATGY	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	3 cut(s)	95, 346, 378
BstYI	RGATCY	3 cut(s)	95, 346, 378
Bsu36I	CCTNAGG	3 cut(s)	240, 366, 725
BsuRI	GGCC	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	173, 299, 508
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	3 cut(s)	460, 479, 527
CpoI	CGGWCCG	1 cut(s)	479
CspI	CGGWCCG	1 cut(s)	479
CviAII	CATG	3 cut(s)	16, 61, 520
CviJI	RGCY	9 cut(s)	23, 133, 163, 167, 357, 392, 421, 494, 658
CviKI_1	RGCY	9 cut(s)	23, 133, 163, 167, 357, 392, 421, 494, 658
DdeI	CTNAG	5 cut(s)	240, 302, 366, 393, 725
DpnI	GATC	6 cut(s)	36, 97, 261, 348, 380, 636
DpnII	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
EaeI	YGGCCR	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	471
Eco47I	GGWCC	3 cut(s)	460, 479, 527
Eco57I	CTGAAG	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	443
Eco81I	CCTNAGG	3 cut(s)	240, 366, 725
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	2 cut(s)	460, 527
FaeI	CATG	3 cut(s)	19, 64, 523
FaiI	YATR	9 cut(s)	17, 62, 66, 160, 208, 339, 417, 521, 543
FaqI	GGGAC	2 cut(s)	208, 397
FatI	CATG	3 cut(s)	15, 60, 519
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	608
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	2 cut(s)	477, 485
Hin1II	CATG	3 cut(s)	19, 64, 523
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	2 cut(s)	21, 419
HinfI	GANTC	2 cut(s)	333, 407
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	477, 485
HphI	GGTGA	2 cut(s)	418, 499
Hpy166II	GTNNAC	3 cut(s)	6, 127, 273
Hpy188I	TCNGA	2 cut(s)	192, 378
Hpy188III	TCNNGA	3 cut(s)	242, 263, 283
Hpy8I	GTNNAC	3 cut(s)	6, 127, 273
HpyAV	CCTTC	3 cut(s)	137, 518, 658
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	2 cut(s)	342, 442
HpyCH4V	TGCA	4 cut(s)	352, 452, 641, 701
HpyF3I	CTNAG	5 cut(s)	240, 302, 366, 393, 725
HpySE526I	ACGT	2 cut(s)	342, 442
Hsp92II	CATG	3 cut(s)	19, 64, 523
Ksp22I	TGATCA	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
LweI	GCATC	1 cut(s)	585
MaeII	ACGT	2 cut(s)	342, 442
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	6 cut(s)	36, 97, 261, 348, 380, 636
MboI	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
MboII	GAAGA	6 cut(s)	91, 152, 191, 214, 323, 562
MflI	RGATCY	3 cut(s)	95, 346, 378
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	5 cut(s)	557, 566, 609, 675, 682
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	117, 249, 361, 388, 451, 460, 647
Mox20I	TGGCCA	1 cut(s)	163
MroXI	GAANNNNTTC	2 cut(s)	186, 561
MscI	TGGCCA	1 cut(s)	163
MseI	TTAA	2 cut(s)	126, 318
Msp20I	TGGCCA	1 cut(s)	163
MspA1I	CMGCKG	2 cut(s)	167, 392
MspI	CCGG	2 cut(s)	477, 485
NdeII	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
NlaIII	CATG	3 cut(s)	19, 64, 523
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PdmI	GAANNNNTTC	2 cut(s)	186, 561
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	341
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	341
Ppu21I	YACGTR	1 cut(s)	443
PpuMI	RGGWCCY	2 cut(s)	460, 527
PscI	ACATGT	1 cut(s)	60
Psp5II	RGGWCCY	2 cut(s)	460, 527
PspCI	CACGTG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	460, 479, 527
PspPPI	RGGWCCY	2 cut(s)	460, 527
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	510
PsuI	RGATCY	3 cut(s)	95, 346, 378
PvuII	CAGCTG	2 cut(s)	167, 392
Rsr2I	CGGWCCG	1 cut(s)	479
RsrII	CGGWCCG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	126, 318
Sau3AI	GATC	6 cut(s)	34, 95, 259, 346, 378, 634
Sau96I	GGNCC	3 cut(s)	460, 479, 527
SchI	GAGTC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	1 cut(s)	639
SgrAI	CRCCGGYG	1 cut(s)	484
SinI	GGWCC	3 cut(s)	460, 479, 527
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	557, 566, 609, 675, 682
SsiI	CCGC	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	2 cut(s)	345, 445
TaqI	TCGA	1 cut(s)	456
TasI	AATT	5 cut(s)	557, 566, 609, 675, 682
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	126, 318
Tru9I	TTAA	2 cut(s)	126, 318
TscAI	CASTG	3 cut(s)	180, 306, 515
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspRI	CASTG	3 cut(s)	180, 306, 515
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	460, 479, 527
XagI	CCTNNNNNAGG	1 cut(s)	534
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	186, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.