Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009812

Physical Location & Seq

Genomic Coordinates Forward (+)

39989590 .. 39990732

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGATTGACAAGGAAATCTATCACCCTGTCCACCCTAGACACAAGCTCAAGATTGAATACACAGAGATCCCATTTTACTGTGATGGGTGCAAAGAAGCTGGGATTGGCCTCAAATATAAGTGTCAGCAATGCGAATTTGATCTTCACAAGTCATGTGCTGTGGCTCCTCTCTACATCACCCATCCCTTCTACAACAAATGTGAGTTTCAATTTCTTTATAGCCCGCCTGGTTCTCTTAGAAGAGTATGTGATGCTTGTAGGAAAGATGTTTCCGGGTTTGTGTACCACTGCAGGAGATGTGGGTTTGATCTACACCCTTGTTGTGCAAACCTCCCACAAGTCCTAGATGATGGGAAGCACAACCTTTACTTGTGCCTCAAGTTAACCAGCGCTTGTCATCGGTGTGGAGGCAAGGGACCTGGTTGGTCTTACAGGTCTGACTGCAAGACCTATAACCTTCACGTGTCATGTGTGAAGGAGTTGCTTGTGGAGAGCTGGCAAGCCATGTATCTCAATGTGGACAAGAATAAGGTTAGGGAAATGCAGACTAGAATTCCTAGCCTTAAGGGCACACTGCAAAACCATCATGGGAAAAAAGGAGGGAAGGTTGGGAAATGTTGCCAGATTGCTGGTGGTGCTGTTCGTGTTATCGTCTCTGCCATCCTCGGAGATCCTACTGCTCTAATAGGCGCTGCTGTTGCCGGTTTCATGTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

240

Amino Acids

26.89

Weight (kDa)

9.02

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	10 - 54	7.5e-10	C1 domain
C1_2	PF03107	75 - 110	8.5e-07	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77590 AT1G77590
fragaria_vesca	FvH4_2g26850
malus_domestica	MD08G1163100.v1.1 MD15G1349800.v1.1
prunus_persica	Prupe.1G499000_v2.0.a1 Prupe.1G499000_v2.0.a1
pyrus_communis	pycom08g14100 pycom15g31290
rosa_chinensis	RchiOBHm_Chr6g0295701
rosa_laevigata	RLG00000011774
rosa_multiflora	Rmu_sc0007372.1_g000004 Rmu_sc0007986.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172200
rosa_rugosa	Rorug06G0253400 Rorug06G0253500 Rorug06G0253600
rosa_samantha	Rh6AG367000 Rh6BG374800 Rh6DG367900
rosa_wichuraiana	Rw6G032030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	64, 668
AcsI	RAATTY	2 cut(s)	137, 555
AcvI	CACGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	59, 212
AjnI	CCWGG	2 cut(s)	229, 421
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	49, 101, 498
AluI	AGCT	3 cut(s)	49, 101, 498
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	64, 668
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	137, 555
AspLEI	GCGC	2 cut(s)	395, 695
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	17, 172
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	575
BbrPI	CACGTG	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	5 cut(s)	80, 192, 347, 594, 671
BciT130I	CCWGG	2 cut(s)	231, 423
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	4 cut(s)	39, 347, 552, 561
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	2 cut(s)	396, 696
BfrI	CTTAAG	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	570
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	3 cut(s)	231, 277, 423
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	168, 420
BmrFI	CCNGG	3 cut(s)	231, 277, 423
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	35, 365
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse118I	RCCGGY	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	231, 423
BseDI	CCNNGG	1 cut(s)	667
BseGI	GGATG	2 cut(s)	184, 663
BseMI	GCAATG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	682
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	276, 705
BslFI	GGGAC	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	661
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	69, 142, 310, 673
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	168, 420
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	2 cut(s)	64, 668
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	704
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	4 cut(s)	69, 142, 310, 673
Bst2UI	CCWGG	2 cut(s)	231, 423
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	227, 500, 504
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	184, 663
BstH2I	RGCGCY	2 cut(s)	396, 696
BstHHI	GCGC	2 cut(s)	395, 695
BstKTI	GATC	4 cut(s)	72, 145, 313, 676
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	4 cut(s)	69, 142, 310, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	570, 638, 701
BstNI	CCWGG	2 cut(s)	231, 423
BstSCI	CCNGG	3 cut(s)	229, 275, 421
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	2 cut(s)	69, 673
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	2 cut(s)	69, 673
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	184, 663
BtsI	GCAGTG	2 cut(s)	289, 575
BtsIMutI	CAGTG	2 cut(s)	289, 575
Cac8I	GCNNGC	3 cut(s)	227, 500, 504
CfoI	GCGC	2 cut(s)	395, 695
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	5 cut(s)	156, 471, 508, 590, 712
CviJI	RGCY	8 cut(s)	49, 101, 111, 167, 225, 498, 506, 564
CviKI_1	RGCY	8 cut(s)	49, 101, 111, 167, 225, 498, 506, 564
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	71, 144, 312, 675
DpnII	GATC	4 cut(s)	69, 142, 310, 673
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	419
Eco47III	AGCGCT	1 cut(s)	394
Eco72I	CACGTG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	229, 421
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	5 cut(s)	159, 474, 511, 593, 715
FaiI	YATR	9 cut(s)	120, 157, 222, 250, 456, 472, 509, 591, 713
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	5 cut(s)	155, 470, 507, 589, 711
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	2 cut(s)	171, 650
Fsp4HI	GCNGC	1 cut(s)	696
FspBI	CTAG	4 cut(s)	39, 347, 552, 561
GlaI	GCGC	2 cut(s)	394, 694
GluI	GCNGC	1 cut(s)	696
GsaI	CCCAGC	1 cut(s)	105
HaeII	RGCGCY	2 cut(s)	396, 696
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	276, 705
HhaI	GCGC	2 cut(s)	395, 695
Hin1II	CATG	5 cut(s)	159, 474, 511, 593, 715
Hin6I	GCGC	2 cut(s)	393, 693
HinP1I	GCGC	2 cut(s)	393, 693
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HpaI	GTTAAC	1 cut(s)	387
HpaII	CCGG	2 cut(s)	276, 705
HphI	GGTGA	2 cut(s)	17, 172
Hpy166II	GTNNAC	4 cut(s)	34, 286, 387, 523
Hpy188I	TCNGA	2 cut(s)	442, 671
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	4 cut(s)	34, 286, 387, 523
HpyAV	CCTTC	4 cut(s)	199, 470, 472, 601
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	93, 294, 329, 447, 547, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	570, 638, 701
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	5 cut(s)	159, 474, 511, 593, 715
HspAI	GCGC	2 cut(s)	393, 693
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	4 cut(s)	69, 142, 310, 673
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	421
MaeI	CTAG	4 cut(s)	39, 347, 552, 561
MaeII	ACGT	1 cut(s)	465
MalI	GATC	4 cut(s)	71, 144, 312, 675
MboI	GATC	4 cut(s)	69, 142, 310, 673
MboII	GAAGA	3 cut(s)	16, 137, 255
MflI	RGATCY	2 cut(s)	69, 673
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	3 cut(s)	137, 212, 555
MnlI	CCTC	7 cut(s)	122, 180, 344, 389, 404, 596, 677
MseI	TTAA	2 cut(s)	386, 567
MslI	CAYNNNNRTG	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	2 cut(s)	276, 705
MspR9I	CCNGG	3 cut(s)	231, 277, 423
MvaI	CCWGG	2 cut(s)	231, 423
MwoI	GCNNNNNNNGC	3 cut(s)	570, 638, 701
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	69, 142, 310, 673
NlaIII	CATG	5 cut(s)	159, 474, 511, 593, 715
NlaIV	GGNNCC	2 cut(s)	168, 420
PkrI	GCNGC	1 cut(s)	697
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	229, 421
PspCI	CACGTG	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	229, 421
PspN4I	GGNNCC	2 cut(s)	168, 420
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	69, 673
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	386, 567
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	4 cut(s)	69, 142, 310, 673
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	231, 277, 423
SduI	GDGCHC	1 cut(s)	575
SexAI	ACCWGGT	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	50, 380, 566
SmoI	CTYRAG	3 cut(s)	50, 380, 566
Sse9I	AATT	3 cut(s)	137, 212, 555
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	4 cut(s)	39, 347, 552, 561
StyD4I	CCNGG	3 cut(s)	229, 275, 421
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	468
TasI	AATT	3 cut(s)	137, 212, 555
Tru1I	TTAA	2 cut(s)	386, 567
Tru9I	TTAA	2 cut(s)	386, 567
TscAI	CASTG	2 cut(s)	296, 582
TseI	GCWGC	1 cut(s)	695
TspDTI	ATGAA	2 cut(s)	17, 700
TspRI	CASTG	2 cut(s)	296, 582
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	2 cut(s)	137, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XspI	CTAG	4 cut(s)	39, 347, 552, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.