Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009812

Physical Location & Seq

Genomic Coordinates Reverse (-)

40007727 .. 40008518

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCTTAGTTGCAGAGTCATTTCAGGTGTCGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCAACATTGGAGGACCCTTTAGGCATGTTAACCTGTTCATGGGATTTTAACAATAAGACCGAAGGTTTCATCTGCAACTTTCTGGGAATCGAGTGTTGGCACCCTCATGAAAGCAAAGTTATAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGACGTTGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCAAGTAACGGCCTCAGTGGATCAATTCCCAGTGATATCCAAAAATTGATCCCTTTCGTTACGTCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGCCAATTCCCCGGAATATCTCCAATTGTACTTTTTTCAATGTCCTTAAACTTGACAACAACAAGTTCACGGGTCAGATTCCTGCAGAACTTGGTCAGCTTAGTAGGCTTAAAACATTTAGCGTGGCCAACAATCAACTGTCTGGGCCAGTCCCCTACTTCCACAATATTTATAGGACGGAAGCGGTCCGAGCGGACAGCTATGCAAACAATCCTGGACTCTGCGGTGGTCCTTTGAAGAATTGCCAGTCATCATCTCAGAACAAGAATGATTTAGTGAGGGTTTTCAAGTCTTACACTGTAGTCATGTTGGGAGCACTCGGTTTTGGTATTGGTTTTGTTTTCTCTTTTTCTTTTTTCGTCCTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

263

Amino Acids

28.75

Weight (kDa)

8.32

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77590 AT1G77590
fragaria_vesca	FvH4_2g26850
malus_domestica	MD08G1163100.v1.1 MD15G1349800.v1.1
prunus_persica	Prupe.1G499000_v2.0.a1 Prupe.1G499000_v2.0.a1
pyrus_communis	pycom08g14100 pycom15g31290
rosa_chinensis	RchiOBHm_Chr6g0295701
rosa_laevigata	RLG00000011774
rosa_multiflora	Rmu_sc0007372.1_g000004 Rmu_sc0007986.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172200
rosa_rugosa	Rorug06G0253400 Rorug06G0253500 Rorug06G0253600
rosa_samantha	Rh6AG367000 Rh6BG374800 Rh6DG367900
rosa_wichuraiana	Rw6G032030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	219
AccBSI	CCGCTC	1 cut(s)	614
AccII	CGCG	1 cut(s)	288
AciI	CCGC	4 cut(s)	41, 605, 614, 645
AclWI	GGATC	2 cut(s)	355, 370
AcoI	YGGCCR	1 cut(s)	546
AfaI	GTAC	2 cut(s)	304, 451
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	330, 460, 658, 709
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	5 cut(s)	253, 309, 414, 520, 621
AluI	AGCT	5 cut(s)	253, 309, 414, 520, 621
Alw21I	GWGCWC	1 cut(s)	739
AlwI	GGATC	2 cut(s)	355, 370
AoxI	GGCC	5 cut(s)	274, 337, 422, 546, 566
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	5 cut(s)	133, 422, 566, 607, 650
AsuC2I	CCSGG	1 cut(s)	433
AvaII	GGWCC	3 cut(s)	133, 607, 650
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	739
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	433
BfmI	CTRYAG	2 cut(s)	504, 720
BglII	AGATCT	2 cut(s)	19, 322
Bme1390I	CCNGG	2 cut(s)	433, 636
Bme18I	GGWCC	3 cut(s)	133, 607, 650
BmgT120I	GGNCC	5 cut(s)	133, 422, 566, 607, 650
BmiI	GGNNCC	2 cut(s)	135, 221
BmrFI	CCNGG	2 cut(s)	433, 636
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	5 cut(s)	16, 277, 357, 569, 667
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	355, 432, 692
BseNI	ACTGG	5 cut(s)	16, 277, 357, 569, 667
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	279, 557
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	279, 557
BsnI	GGCC	5 cut(s)	276, 339, 424, 548, 568
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	19, 322, 347, 375, 397
Bsp68I	TCGCGA	1 cut(s)	288
BspACI	CCGC	4 cut(s)	41, 605, 614, 645
BspANI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BspCNI	CTCAG	3 cut(s)	354, 431, 691
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	135, 221
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	355, 370
BspT107I	GGYRCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	5 cut(s)	16, 277, 357, 569, 667
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	19, 322, 347, 375, 397
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	561, 721
BstAUI	TGTACA	1 cut(s)	302
BstDEI	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 678
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	5 cut(s)	22, 325, 350, 378, 400
BstMBI	GATC	5 cut(s)	19, 322, 347, 375, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 526, 611
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	431, 634
BstSFI	CTRYAG	2 cut(s)	504, 720
BstUI	CGCG	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	19, 322
BstYI	RGATCY	2 cut(s)	19, 322
BsuRI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BtsIMutI	CAGTG	3 cut(s)	349, 364, 717
BtuMI	TCGCGA	1 cut(s)	288
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	5 cut(s)	133, 422, 566, 607, 650
CpoI	CGGWCCG	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	303, 450
CspI	CGGWCCG	1 cut(s)	607
CviAII	CATG	4 cut(s)	145, 159, 227, 727
CviQI	GTAC	2 cut(s)	303, 450
DdeI	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 678
DpnI	GATC	5 cut(s)	21, 324, 349, 377, 399
DpnII	GATC	5 cut(s)	19, 322, 347, 375, 397
EaeI	YGGCCR	1 cut(s)	546
Eco32I	GATATC	2 cut(s)	97, 364
Eco47I	GGWCC	3 cut(s)	133, 607, 650
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	2 cut(s)	97, 364
FaeI	CATG	4 cut(s)	148, 162, 230, 730
FaiI	YATR	8 cut(s)	116, 146, 160, 228, 242, 594, 624, 728
FaqI	GGGAC	2 cut(s)	279, 557
FatI	CATG	4 cut(s)	144, 158, 226, 726
FauI	CCCGC	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	276, 339, 424, 548, 568
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	4 cut(s)	148, 162, 230, 730
HincII	GTYRAC	2 cut(s)	9, 150
HindII	GTYRAC	2 cut(s)	9, 150
HindIII	AAGCTT	2 cut(s)	251, 307
HinfI	GANTC	5 cut(s)	72, 207, 267, 499, 639
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	433
Hpy166II	GTNNAC	3 cut(s)	9, 150, 489
Hpy188I	TCNGA	3 cut(s)	498, 611, 681
Hpy188III	TCNNGA	3 cut(s)	88, 227, 287
Hpy8I	GTNNAC	3 cut(s)	9, 150, 489
Hpy99I	CGWCG	2 cut(s)	293, 394
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	561, 721
HpyCH4IV	ACGT	2 cut(s)	291, 389
HpyCH4V	TGCA	5 cut(s)	27, 69, 195, 506, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 526, 611
HpyF3I	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 678
HpySE526I	ACGT	2 cut(s)	291, 389
Hsp92II	CATG	4 cut(s)	148, 162, 230, 730
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	19, 322, 347, 375, 397
LmnI	GCTCC	1 cut(s)	734
MaeII	ACGT	2 cut(s)	291, 389
MaeIII	GTNAC	2 cut(s)	332, 385
MalI	GATC	5 cut(s)	21, 324, 349, 377, 399
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	5 cut(s)	19, 322, 347, 375, 397
MboII	GAAGA	1 cut(s)	670
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	2 cut(s)	19, 322
MhlI	GDGCHC	1 cut(s)	739
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	6 cut(s)	298, 351, 371, 426, 445, 661
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	3 cut(s)	81, 261, 633
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	124, 234, 294, 350, 693
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	5 cut(s)	149, 168, 311, 468, 531
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	2 cut(s)	433, 636
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	315, 526, 611
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	5 cut(s)	19, 322, 347, 375, 397
NlaIII	CATG	4 cut(s)	148, 162, 230, 730
NlaIV	GGNNCC	2 cut(s)	135, 221
NruI	TCGCGA	1 cut(s)	288
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	207, 499
PfoI	TCCNGGA	1 cut(s)	634
PleI	GAGTC	3 cut(s)	80, 261, 633
PpsI	GAGTC	3 cut(s)	80, 261, 633
PpuMI	RGGWCCY	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	5 cut(s)	133, 422, 566, 607, 650
PspPPI	RGGWCCY	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	19, 322
RruI	TCGCGA	1 cut(s)	288
RsaI	GTAC	2 cut(s)	304, 451
RsaNI	GTAC	2 cut(s)	303, 450
RseI	CAYNNNNRTG	1 cut(s)	225
Rsr2I	CGGWCCG	1 cut(s)	607
RsrII	CGGWCCG	1 cut(s)	607
SaqAI	TTAA	5 cut(s)	149, 168, 311, 468, 531
Sau3AI	GATC	5 cut(s)	19, 322, 347, 375, 397
Sau96I	GGNCC	5 cut(s)	133, 422, 566, 607, 650
SchI	GAGTC	3 cut(s)	81, 261, 633
ScrFI	CCNGG	2 cut(s)	433, 636
SduI	GDGCHC	1 cut(s)	739
SfcI	CTRYAG	2 cut(s)	504, 720
SinI	GGWCC	3 cut(s)	133, 607, 650
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	6 cut(s)	298, 351, 371, 426, 445, 661
SsiI	CCGC	4 cut(s)	41, 605, 614, 645
SspI	AATATT	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	431, 634
TaaI	ACNGT	2 cut(s)	561, 721
TaiI	ACGT	2 cut(s)	294, 392
TaqI	TCGA	3 cut(s)	87, 210, 787
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	6 cut(s)	298, 351, 371, 426, 445, 661
TatI	WGTACW	2 cut(s)	302, 449
TfiI	GAWTC	2 cut(s)	207, 499
Tru1I	TTAA	5 cut(s)	149, 168, 311, 468, 531
Tru9I	TTAA	5 cut(s)	149, 168, 311, 468, 531
TscAI	CASTG	3 cut(s)	349, 364, 724
TspDTI	ATGAA	3 cut(s)	147, 178, 243
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	3 cut(s)	349, 364, 724
VpaK11BI	GGWCC	3 cut(s)	133, 607, 650
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.