Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007185

Physical Location & Seq

Genomic Coordinates Reverse (-)

42314510 .. 42316823

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCAAAGACGTCTTATCCCCAGCAGCAGCACCCAAAGAACCCCCGCCGGCTCCGGCGATACCCGCGTCTATTTCGGGTCTGACCCTCCTTGACATTATCCGCAACGACGAGCCCAAATCGTATAAGGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACATTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCCGCCTGGGCCTCCACCGCCCAAGTCCCCACCTCCGACGTCCCCCTCCGGAACAACAACCACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACATCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGAGCAAACGCCGACACCAGCAACCGGCCGCCGCAGGCCGCCGGCTCCGCGCCGAGTTTCAATCGGCGGAGCTCCGTGCGGTTCGCGTCGGACATCGAGTCGCCGCGGCCCAAGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGTGGCGGCACAAGAGGCTGCCGAGGCCGCCGCCGCCGCAGCGGCGGCTGATGCGGCAGCGGCGGAGGAGAAGGCAGAGAGAGAAGGAGATGGAGAGGGAGACGGCGCATCTTCGTCCGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGCCGGAGCCGGAGCCGGTGAGGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAGGGAGGGAGGTACACCATGGACGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGTGGAGGAGGTGGTGAAGGAGGAAGAACCGGAAGAAGGTGGGGGCGTGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCATTTATCCCCTGCGGGCATACCTTTTGCCGGATGTGCTCCAGAGAGTTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

347

Amino Acids

37.57

Weight (kDa)

4.8

Isoelectric Point (pI)

67.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	296 - 340	7.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	299 - 336	6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25430 AT4G32285 AT4G32285
fragaria_vesca	FvH4_2g28990 FvH4_2g28990 FvH4_2g28990 FvH4_2g28990
malus_domestica	MD00G1144700.v1.1 MD08G1150700.v1.1
prunus_persica	Prupe.1G481500_v2.0.a1 Prupe.1G481500_v2.0.a1
pyrus_communis	pycom08g12710 pycom15g11360
rosa_chinensis	RchiOBHm_Chr6g0297851
rosa_laevigata	RLG00000011556
rosa_multiflora	Rmu_sc0003137.1_g000015
rosa_roxburghii	Rroxscaffold_7G00170150 Rroxscaffold_7G00179000
rosa_rugosa	Rorug06G0275900 Rorug06G0276000
rosa_samantha	Rh6AG386600 Rh6BG395200 Rh6CG401000 Rh6DG387300
rosa_wichuraiana	Rw6G033690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	54, 282
AccII	CGCG	5 cut(s)	107, 437, 473, 493, 926
AccIII	TCCGGA	1 cut(s)	288
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	1026
AcyI	GRCGYC	2 cut(s)	51, 279
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	411, 872, 957
AgsI	TTSAA	2 cut(s)	211, 448
AhdI	GACNNNNNGTC	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	245, 313
AluBI	AGCT	2 cut(s)	459, 502
AluI	AGCT	2 cut(s)	459, 502
Alw21I	GWGCWC	3 cut(s)	461, 891, 968
Alw26I	GTCTC	3 cut(s)	500, 642, 743
AlwI	GGATC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	897
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	6 cut(s)	168, 249, 413, 423, 494, 573
ApeKI	GCWGC	7 cut(s)	65, 68, 370, 566, 587, 605, 897
ApoI	RAATTY	1 cut(s)	1026
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	242, 439, 656, 926
AspS9I	GGNCC	2 cut(s)	249, 495
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	4 cut(s)	692, 730, 862, 922
BaeI	ACNNNNGTAYC	2 cut(s)	92, 125
BanII	GRGCYC	3 cut(s)	156, 387, 461
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	3 cut(s)	461, 891, 968
BbvI	GCAGC	7 cut(s)	77, 80, 382, 553, 599, 617, 884
BccI	CCATC	5 cut(s)	353, 370, 632, 727, 757
BceAI	ACGGC	4 cut(s)	34, 181, 525, 667
BciT130I	CCWGG	2 cut(s)	247, 315
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	500, 642, 743
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	243
BglI	GCCNNNNNGGC	3 cut(s)	248, 315, 590
BlpI	GCTNAGC	1 cut(s)	381
Bme1390I	CCNGG	3 cut(s)	247, 315, 387
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	249, 495
BmiI	GGNNCC	6 cut(s)	93, 366, 433, 702, 708, 714
BmrFI	CCNGG	3 cut(s)	247, 315, 387
BmsI	GCATC	2 cut(s)	589, 665
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	3 cut(s)	524, 791, 952
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	387
BsaHI	GRCGYC	2 cut(s)	51, 279
BsaJI	CCNNGG	5 cut(s)	197, 246, 491, 570, 789
BsaWI	WCCGGW	3 cut(s)	288, 677, 865
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 872, 957
Bse118I	RCCGGY	4 cut(s)	88, 411, 428, 715
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	247, 315
BseDI	CCNNGG	5 cut(s)	197, 246, 491, 570, 789
BseGI	GGATG	3 cut(s)	345, 729, 966
BseLI	CCNNNNNNNGG	3 cut(s)	411, 872, 957
BseMII	CTCAG	2 cut(s)	29, 372
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	7 cut(s)	77, 80, 382, 553, 599, 617, 884
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	1004
Bsh1236I	CGCG	5 cut(s)	107, 437, 473, 493, 926
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	6 cut(s)	170, 251, 415, 425, 496, 575
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	3 cut(s)	461, 891, 968
BslFI	GGGAC	2 cut(s)	251, 266
BslI	CCNNNNNNNGG	3 cut(s)	411, 872, 957
BsmAI	GTCTC	3 cut(s)	500, 642, 743
BsmBI	CGTCTC	3 cut(s)	500, 642, 743
BsmFI	GGGAC	2 cut(s)	251, 266
BsnI	GGCC	6 cut(s)	170, 251, 415, 425, 496, 575
Bsp1286I	GDGCHC	5 cut(s)	156, 387, 461, 891, 968
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	174, 332, 513
Bsp1720I	GCTNAGC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	789
BspANI	GGCC	6 cut(s)	170, 251, 415, 425, 496, 575
BspCNI	CTCAG	2 cut(s)	30, 373
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	5 cut(s)	107, 437, 473, 493, 926
BspLI	GGNNCC	6 cut(s)	93, 366, 433, 702, 708, 714
BspPI	GGATC	1 cut(s)	327
BsrFI	RCCGGY	4 cut(s)	88, 411, 428, 715
BssAI	RCCGGY	4 cut(s)	88, 411, 428, 715
BssECI	CCNNGG	5 cut(s)	197, 246, 491, 570, 789
BssMI	GATC	3 cut(s)	174, 332, 513
BssNI	GRCGYC	2 cut(s)	51, 279
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	2 cut(s)	247, 315
Bst4CI	ACNGT	2 cut(s)	688, 893
Bst6I	CTCTTC	3 cut(s)	792, 801, 825
BstACI	GRCGYC	2 cut(s)	51, 279
BstC8I	GCNNGC	6 cut(s)	90, 238, 311, 423, 430, 944
BstDEI	CTNAG	2 cut(s)	38, 381
BstDSI	CCRYGG	3 cut(s)	197, 491, 789
BstF5I	GGATG	3 cut(s)	345, 729, 966
BstFNI	CGCG	5 cut(s)	107, 437, 473, 493, 926
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	4 cut(s)	242, 439, 656, 926
BstKTI	GATC	3 cut(s)	177, 335, 516
BstMAI	GTCTC	3 cut(s)	500, 642, 743
BstMBI	GATC	3 cut(s)	174, 332, 513
BstMCI	CGRYCG	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	247, 315
BstSCI	CCNGG	3 cut(s)	245, 313, 385
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	5 cut(s)	107, 437, 473, 493, 926
BstV1I	GCAGC	7 cut(s)	77, 80, 382, 553, 599, 617, 884
BstV2I	GAAGAC	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	413
BsuRI	GGCC	6 cut(s)	170, 251, 415, 425, 496, 575
BtgI	CCRYGG	3 cut(s)	197, 491, 789
BtsCI	GGATG	3 cut(s)	345, 729, 966
Cac8I	GCNNGC	6 cut(s)	90, 238, 311, 423, 430, 944
CaiI	CAGNNNCTG	1 cut(s)	897
CfoI	GCGC	4 cut(s)	242, 439, 656, 926
Cfr10I	RCCGGY	4 cut(s)	88, 411, 428, 715
Cfr13I	GGNCC	2 cut(s)	249, 495
Cfr42I	CCGCGG	1 cut(s)	494
CseI	GACGC	2 cut(s)	96, 462
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	2 cut(s)	790, 907
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	2 cut(s)	38, 381
DpnI	GATC	3 cut(s)	176, 334, 515
DpnII	GATC	3 cut(s)	174, 332, 513
DriI	GACNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	792, 801, 825
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	3 cut(s)	792, 801, 825
EciI	GGCGGA	3 cut(s)	212, 469, 626
Ecl136II	GAGCTC	1 cut(s)	459
EclXI	CGGCCG	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	3 cut(s)	156, 387, 461
Eco52I	CGGCCG	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	245, 313
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	3 cut(s)	156, 387, 461
ErhI	CCWWGG	1 cut(s)	789
Esp3I	CGTCTC	3 cut(s)	500, 642, 743
FaeI	CATG	2 cut(s)	793, 910
FaiI	YATR	5 cut(s)	165, 791, 908, 918, 948
FaqI	GGGAC	2 cut(s)	251, 266
FatI	CATG	2 cut(s)	789, 906
FauI	CCCGC	4 cut(s)	93, 112, 344, 935
FokI	GGATG	3 cut(s)	332, 736, 973
FriOI	GRGCYC	3 cut(s)	156, 387, 461
GlaI	GCGC	4 cut(s)	241, 438, 655, 925
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	3 cut(s)	524, 791, 952
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	6 cut(s)	170, 251, 415, 425, 496, 575
HgaI	GACGC	2 cut(s)	96, 462
HhaI	GCGC	4 cut(s)	242, 439, 656, 926
Hin1I	GRCGYC	2 cut(s)	51, 279
Hin1II	CATG	2 cut(s)	793, 910
Hin6I	GCGC	4 cut(s)	240, 437, 654, 924
HinP1I	GCGC	4 cut(s)	240, 437, 654, 924
HinfI	GANTC	1 cut(s)	485
HphI	GGTGA	4 cut(s)	692, 730, 862, 922
Hpy166II	GTNNAC	1 cut(s)	786
Hpy188I	TCNGA	6 cut(s)	123, 179, 277, 478, 667, 1043
Hpy188III	TCNNGA	4 cut(s)	229, 289, 969, 1031
Hpy8I	GTNNAC	1 cut(s)	786
Hpy99I	CGWCG	4 cut(s)	152, 281, 478, 697
HpyAV	CCTTC	5 cut(s)	613, 626, 664, 847, 866
HpyCH4III	ACNGT	2 cut(s)	688, 893
HpyCH4IV	ACGT	3 cut(s)	51, 279, 692
HpyCH4V	TGCA	3 cut(s)	906, 985, 1008
HpyF3I	CTNAG	2 cut(s)	38, 381
HpySE526I	ACGT	3 cut(s)	51, 279, 692
Hsp92I	GRCGYC	2 cut(s)	51, 279
Hsp92II	CATG	2 cut(s)	793, 910
HspAI	GCGC	4 cut(s)	240, 437, 654, 924
Kpn2I	TCCGGA	1 cut(s)	288
KroI	GCCGGC	2 cut(s)	88, 428
KroNI	GCCGGC	2 cut(s)	90, 430
KspI	CCGCGG	1 cut(s)	494
Kzo9I	GATC	3 cut(s)	174, 332, 513
Lsp1109I	GCAGC	7 cut(s)	77, 80, 382, 553, 599, 617, 884
LweI	GCATC	2 cut(s)	589, 665
MaeII	ACGT	3 cut(s)	51, 279, 692
MaeIII	GTNAC	2 cut(s)	350, 688
MalI	GATC	3 cut(s)	176, 334, 515
MboI	GATC	3 cut(s)	174, 332, 513
MboII	GAAGA	8 cut(s)	214, 651, 809, 815, 818, 842, 872, 881
MhlI	GDGCHC	5 cut(s)	156, 387, 461, 891, 968
MluCI	AATT	2 cut(s)	1012, 1026
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	3 cut(s)	300, 456, 723
MroI	TCCGGA	1 cut(s)	288
MroNI	GCCGGC	2 cut(s)	88, 428
MroXI	GAANNNNTTC	1 cut(s)	206
MspA1I	CMGCKG	3 cut(s)	493, 590, 608
MspR9I	CCNGG	3 cut(s)	247, 315, 387
MvaI	CCWGG	2 cut(s)	247, 315
MvnI	CGCG	5 cut(s)	107, 437, 473, 493, 926
NaeI	GCCGGC	2 cut(s)	90, 430
NciI	CCSGG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	3 cut(s)	174, 332, 513
NgoMIV	GCCGGC	2 cut(s)	88, 428
NlaIII	CATG	2 cut(s)	793, 910
NlaIV	GGNNCC	6 cut(s)	93, 366, 433, 702, 708, 714
NmeAIII	GCCGAG	2 cut(s)	465, 595
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdiI	GCCGGC	2 cut(s)	90, 430
PdmI	GAANNNNTTC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	245, 313
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	2 cut(s)	245, 313
PspN4I	GGNNCC	6 cut(s)	93, 366, 433, 702, 708, 714
PspPI	GGNCC	2 cut(s)	249, 495
PstNI	CAGNNNCTG	1 cut(s)	897
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
SacI	GAGCTC	1 cut(s)	461
SacII	CCGCGG	1 cut(s)	494
Sau3AI	GATC	3 cut(s)	174, 332, 513
Sau96I	GGNCC	2 cut(s)	249, 495
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	247, 315, 387
SduI	GDGCHC	5 cut(s)	156, 387, 461, 891, 968
SfaNI	GCATC	2 cut(s)	589, 665
SfcI	CTRYAG	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	494
SgrBI	CCGCGG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	1012, 1026
SseBI	AGGCCT	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	461
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	245, 313, 385
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	2 cut(s)	688, 893
TaiI	ACGT	3 cut(s)	54, 282, 695
TaqI	TCGA	1 cut(s)	483
TasI	AATT	2 cut(s)	1012, 1026
TseI	GCWGC	7 cut(s)	65, 68, 370, 566, 587, 605, 897
TspDTI	ATGAA	1 cut(s)	1006
TspGWI	ACGGA	3 cut(s)	338, 451, 767
XapI	RAATTY	1 cut(s)	1026
XmnI	GAANNNNTTC	1 cut(s)	206
ZraI	GACGTC	2 cut(s)	52, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.