Rorug06G0321800

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013628
Physical Location & Seq
Reverse (-)
47337733 .. 47339031
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0321800.1

Sequence Viewer

Length: 1221 bp
ATGGAAGTCCTACAACTTTATGAGCTCAGCTACTCTGATCTCCTTCTTGTGTCGTCAAACCATGTTTCACCGCCGTCACCGGAAGAGTTTGAAAAGGTGGAGTCAACTAGCAAAGCTATAATGGAAGCCCTAGGGCCCATGGGCCCAGGCTTGCTGTCGATCACCGGCGTCCCCAACGCCGCCGCTCTCCGCCGGAATCTCCTCCCTCTGGCTCGCAAGCTCGCCCTTCTGGAACCCAATCACCGCAAGCTCATTCTCAAGGATCACAAATTGGGGAGTGATGTGCCTTTGAAAAACCCAGAGAGAAATGTTTCATCTTTCGCTATGCAAATCAAATATTCACATGATATTGAAGATACCCAGTTGAATTCAGAGCATGAATCAGTGAGTGGATTTGAGAATCTTGGAAATGGGTTTAGAGAGTTGGGAATTTGCATGATGGAGCTTGGTCTCAGACTAGCCAGAATTTGTGATAGAGCCATTGGTGGCCAAGAGCTTGAGCAGAGCTTATTGGAATCTGGCACTGCCAAAGCTCGGCTTATACACTATCATTCATTTCTAGAGAAAACCATTTTGGTTCAGGAAGCTAGACCCAAAAAGGCTGTTAATTCGAAGAGGATTCGGATTGGTGATGAAGATAAACGGTCAGGCGGAGATGATTCTAGTAATCTATGGCAACAATGGCATTATGATTATGGGATTTTCACTGTGTTAACAGCTCCATTGTTTGTATTGGCTTCTAATGCACAAGCACCAGAAGAAAGGGAAGAATGTGCTTACCCAAATGGGCATACTTATTTGCAAGTATTTGATCCAAGCAAGAACAATGTGTTCATGGTGAAGGCTTCTCCTGAGAGTTTTATCATTCAGGTTGGAGAGTCGGCTGATATCATATCGCGAGGAAAGCTTCGCGCCACCCTTCATTCGGTTGCTAGACCTCCCAAGTTTGAAAATTTGAGCAGAGAAACTTTTGTTCTGTTCTTGCAGCCTGCTTGGAACAAAACTTTCTCTACCGAAGATTATCCCATGAACCAGATCTCAGGGACATCTTCTGAGGTAAAATGGGATGATGAGTTGGAAAGGAGTAGGCTAACTGAAGAAATACAGAAAATTGTACCACCTCTGGCGATGCGATTGAAGAATGGGATGACATTTGCAGATTTCTCGCGCGAAACCACCAAGCAATACTATGGTGGCACTGGTTTGCAGTCTAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La

Protein Analysis

406

Amino Acids

45.64

Weight (kDa)

6.0

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38070 FvH4_2g38070
malus_domestica MD08G1009300.v1.1 MD15G1008200.v1.1
prunus_persica Prupe.1G361000_v2.0.a1
pyrus_communis pycom08g00770 pycom15g00660
rosa_chinensis RchiOBHm_Chr6g0303491
rosa_laevigata RLG00000011080
rosa_multiflora Rmu_ssc0000114.1_g000046
rosa_roxburghii Rroxscaffold_7G00164700
rosa_rugosa Rorug06G0321800 Rorug06G0321900
rosa_samantha Rh6AG436200 Rh6BG467300 Rh6CG448200 Rh6DG434800
rosa_wichuraiana Rw6G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 4 cut(s) 898, 912, 1168, 1170
AciI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
AclWI GGATC 2 cut(s) 270, 806
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 4 cut(s) 367, 429, 465, 952
AcuI CTGAAG 1 cut(s) 1116
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 1116
AfiI CCNNNNNNNGG 3 cut(s) 208, 534, 925
AgsI TTSAA 6 cut(s) 92, 292, 353, 367, 950, 1138
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 270, 806
AoxI GGCC 3 cut(s) 134, 142, 487
ApaI GGGCCC 2 cut(s) 138, 146
ApeKI GCWGC 1 cut(s) 985
ApoI RAATTY 4 cut(s) 367, 429, 465, 952
Asp700I GAANNNNTTC 1 cut(s) 310
AspA2I CCTAGG 1 cut(s) 130
AspLEI GCGC 2 cut(s) 914, 1170
AspS9I GGNCC 4 cut(s) 134, 135, 142, 143
AsuHPI GGTGA 6 cut(s) 60, 69, 154, 233, 641, 850
AsuII TTCGAA 1 cut(s) 611
AvrII CCTAGG 1 cut(s) 130
BaeGI GKGCMC 2 cut(s) 138, 146
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 3 cut(s) 27, 138, 146
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 997
BccI CCATC 1 cut(s) 433
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 1146, 1180
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
BglII AGATCT 1 cut(s) 1035
BisI GCNGC 3 cut(s) 180, 183, 986
BlnI CCTAGG 1 cut(s) 130
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 181, 184, 987
Bme1390I CCNGG 1 cut(s) 147
BmgT120I GGNCC 4 cut(s) 134, 135, 142, 143
BmiI GGNNCC 3 cut(s) 136, 144, 234
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 1119
BmuI ACTGGG 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 611
BpuEI CTTGAG 2 cut(s) 242, 518
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 130, 138, 145
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 534, 925
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 361, 1204
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 130, 138, 145
BseGI GGATG 2 cut(s) 1072, 1152
BseLI CCNNNNNNNGG 3 cut(s) 208, 534, 925
BseMII CTCAG 5 cut(s) 40, 466, 843, 1044, 1053
BseNI ACTGG 2 cut(s) 361, 1204
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 2 cut(s) 138, 146
BseXI GCAGC 1 cut(s) 997
Bsh1236I CGCG 4 cut(s) 898, 912, 1168, 1170
BshFI GGCC 3 cut(s) 136, 144, 489
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 3 cut(s) 80, 165, 193
BslFI GGGAC 2 cut(s) 155, 1057
BslI CCNNNNNNNGG 3 cut(s) 208, 534, 925
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 155, 1057
BsnI GGCC 3 cut(s) 136, 144, 489
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 611
Bsp120I GGGCCC 2 cut(s) 134, 142
Bsp1286I GDGCHC 3 cut(s) 27, 138, 146
Bsp143I GATC 5 cut(s) 37, 159, 262, 811, 1035
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 898
BspACI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
BspANI GGCC 3 cut(s) 136, 144, 489
BspCNI CTCAG 5 cut(s) 39, 465, 844, 1045, 1052
BspFNI CGCG 4 cut(s) 898, 912, 1168, 1170
BspLI GGNNCC 3 cut(s) 136, 144, 234
BspPI GGATC 2 cut(s) 270, 806
BspT104I TTCGAA 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 361, 1204
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 130, 138, 145
BssMI GATC 5 cut(s) 37, 159, 262, 811, 1035
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 130, 138
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 645, 709
Bst6I CTCTTC 2 cut(s) 78, 608
BstACI GRCGYC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 6 cut(s) 152, 214, 218, 222, 248, 990
BstDEI CTNAG 5 cut(s) 26, 452, 852, 1039, 1053
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 1072, 1152
BstFNI CGCG 4 cut(s) 898, 912, 1168, 1170
BstHHI GCGC 2 cut(s) 914, 1170
BstKTI GATC 5 cut(s) 40, 162, 265, 814, 1038
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 5 cut(s) 37, 159, 262, 811, 1035
BstMWI GCNNNNNNNGC 3 cut(s) 682, 743, 904
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 2 cut(s) 138, 146
BstUI CGCG 4 cut(s) 898, 912, 1168, 1170
BstV1I GCAGC 1 cut(s) 997
BstX2I RGATCY 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1035
BsuRI GGCC 3 cut(s) 136, 144, 489
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 1142
BtsCI GGATG 2 cut(s) 1072, 1152
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 4 cut(s) 390, 522, 705, 1197
BtuMI TCGCGA 1 cut(s) 898
Cac8I GCNNGC 6 cut(s) 152, 214, 218, 222, 248, 990
CfoI GCGC 2 cut(s) 914, 1170
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 134, 135, 142, 143
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 1115
CviAII CATG 7 cut(s) 62, 139, 344, 377, 436, 835, 1027
CviQI GTAC 1 cut(s) 1115
DdeI CTNAG 5 cut(s) 26, 452, 852, 1039, 1053
DpnI GATC 5 cut(s) 39, 161, 264, 813, 1037
DpnII GATC 5 cut(s) 37, 159, 262, 811, 1035
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 78, 608
EarI CTCTTC 2 cut(s) 78, 608
EciI GGCGGA 2 cut(s) 179, 666
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 130, 138
Eco24I GRGCYC 3 cut(s) 27, 138, 146
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 889
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 1116
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 889
EcoT14I CCWWGG 2 cut(s) 130, 138
EcoT38I GRGCYC 3 cut(s) 27, 138, 146
ErhI CCWWGG 2 cut(s) 130, 138
FaeI CATG 7 cut(s) 65, 142, 347, 380, 439, 838, 1030
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 2 cut(s) 155, 1057
FatI CATG 7 cut(s) 61, 138, 343, 376, 435, 834, 1026
Fnu4HI GCNGC 3 cut(s) 180, 183, 986
FokI GGATG 2 cut(s) 1079, 1159
FriOI GRGCYC 3 cut(s) 27, 138, 146
Fsp4HI GCNGC 3 cut(s) 180, 183, 986
FspBI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
GlaI GCGC 2 cut(s) 913, 1169
GluI GCNGC 3 cut(s) 180, 183, 986
HaeIII GGCC 3 cut(s) 136, 144, 489
HapII CCGG 3 cut(s) 80, 165, 193
HgaI GACGC 1 cut(s) 157
HhaI GCGC 2 cut(s) 914, 1170
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 7 cut(s) 65, 142, 347, 380, 439, 838, 1030
Hin6I GCGC 2 cut(s) 912, 1168
HinP1I GCGC 2 cut(s) 912, 1168
HincII GTYRAC 2 cut(s) 105, 714
HindII GTYRAC 2 cut(s) 105, 714
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 8 cut(s) 101, 196, 380, 400, 515, 619, 659, 878
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 3 cut(s) 80, 165, 193
HphI GGTGA 6 cut(s) 60, 69, 154, 233, 641, 850
Hpy166II GTNNAC 2 cut(s) 105, 714
Hpy188I TCNGA 5 cut(s) 37, 373, 455, 624, 1054
Hpy188III TCNNGA 5 cut(s) 230, 560, 581, 851, 897
Hpy8I GTNNAC 2 cut(s) 105, 714
HpyAV CCTTC 4 cut(s) 53, 236, 835, 929
HpyCH4III ACNGT 2 cut(s) 645, 709
HpyCH4V TGCA 7 cut(s) 328, 435, 746, 802, 985, 1157, 1207
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 743, 904
HpyF3I CTNAG 5 cut(s) 26, 452, 852, 1039, 1053
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 7 cut(s) 65, 142, 347, 380, 439, 838, 1030
HspAI GCGC 2 cut(s) 912, 1168
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 37, 159, 262, 811, 1035
LmnI GCTCC 2 cut(s) 442, 724
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 1 cut(s) 1119
MaeI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
MaeIII GTNAC 1 cut(s) 75
MalI GATC 5 cut(s) 39, 161, 264, 813, 1037
MbiI CCGCTC 1 cut(s) 185
MboI GATC 5 cut(s) 37, 159, 262, 811, 1035
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 3 cut(s) 27, 138, 146
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 7 cut(s) 269, 367, 429, 465, 607, 952, 1110
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 2 cut(s) 110, 887
MmeI TCCRAC 2 cut(s) 853, 1056
MnlI CCTC 7 cut(s) 212, 216, 609, 893, 948, 1048, 1131
Mox20I TGGCCA 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 489
MseI TTAA 2 cut(s) 606, 713
Msp20I TGGCCA 1 cut(s) 489
MspI CCGG 3 cut(s) 80, 165, 193
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 4 cut(s) 898, 912, 1168, 1170
MwoI GCNNNNNNNGC 3 cut(s) 682, 743, 904
NcoI CCATGG 1 cut(s) 138
NdeII GATC 5 cut(s) 37, 159, 262, 811, 1035
NlaIII CATG 7 cut(s) 65, 142, 347, 380, 439, 838, 1030
NlaIV GGNNCC 3 cut(s) 136, 144, 234
NmeAIII GCCGAG 1 cut(s) 514
NmuCI GTSAC 1 cut(s) 75
NruI TCGCGA 1 cut(s) 898
NspV TTCGAA 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 6 cut(s) 196, 380, 400, 515, 619, 659
PkrI GCNGC 3 cut(s) 181, 184, 987
PleI GAGTC 2 cut(s) 109, 886
PpsI GAGTC 2 cut(s) 109, 886
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 136, 144, 234
PspOMI GGGCCC 2 cut(s) 134, 142
PspPI GGNCC 4 cut(s) 134, 135, 142, 143
PsuI RGATCY 1 cut(s) 1035
RruI TCGCGA 1 cut(s) 898
RsaI GTAC 1 cut(s) 1116
RsaNI GTAC 1 cut(s) 1115
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 606, 713
SatI GCNGC 3 cut(s) 180, 183, 986
Sau3AI GATC 5 cut(s) 37, 159, 262, 811, 1035
Sau96I GGNCC 4 cut(s) 134, 135, 142, 143
SchI GAGTC 2 cut(s) 110, 887
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 3 cut(s) 27, 138, 146
SfaNI GCATC 1 cut(s) 1119
SfuI TTCGAA 1 cut(s) 611
SgrAI CRCCGGYG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 257, 497
SmoI CTYRAG 2 cut(s) 257, 497
Sse9I AATT 7 cut(s) 269, 367, 429, 465, 607, 952, 1110
SsiI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
SspI AATATT 1 cut(s) 338
SspMI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 2 cut(s) 130, 138
TaaI ACNGT 2 cut(s) 645, 709
TaqI TCGA 2 cut(s) 158, 611
TasI AATT 7 cut(s) 269, 367, 429, 465, 607, 952, 1110
TauI GCSGC 2 cut(s) 182, 185
TfiI GAWTC 6 cut(s) 196, 380, 400, 515, 619, 659
Tru1I TTAA 2 cut(s) 606, 713
Tru9I TTAA 2 cut(s) 606, 713
TscAI CASTG 4 cut(s) 390, 529, 712, 1204
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 1 cut(s) 985
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 7 cut(s) 303, 393, 543, 648, 823, 911, 1043
TspRI CASTG 4 cut(s) 390, 529, 712, 1204
XapI RAATTY 4 cut(s) 367, 429, 465, 952
XbaI TCTAGA 1 cut(s) 559
XmaJI CCTAGG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.