Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004959

Physical Location & Seq

Genomic Coordinates Reverse (-)

48036364 .. 48039963

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGTCCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCCAAGCTAAACCCTCCCAAAGCCCTCCTCTCCATTCGAGATTCTTATGGCGGTGCACGGGCTTGGAAGAAATGCCAGCCCAGTACTGTTAATGTGTGCTCATGGAGCTCAGCTGCTAGTTATGTGACACCTCCGGGAGGCGCTGCTAAGTTTTCTGGCAATCCCATTGTTGTGAAGAAGCAATTGTTGCAAAAGAGAGCTGGAACGGTAAGGGCAGCTACTATTGAAGAAATAGAAGCGGAGAAGTCTGTGATCGAAAAAGATGCTAAAGGCAGGATGGAAAAGACTATTGAAACGGTACGATCCAATTTCAATTCTATTAGGACAGGGAGGGCAAGCCCAGCCATGCTGGACAAGATTGAGGTTGACTATTATGGAAGTCCAGTTGGCTTGAAGAGCCTTGCTCAAATTAGTTCTCCTGATGGAACTTCCCTATTGATTTCGCCATACGATAAATCCAGCTTAAAGTCTATTGAGAAGGCCATAGTTGCCTCTGATCTTGGCATGACTCCAAATAATGATGGAGAAGTGATACGGCTGACCCTGCCTCAACTCACATCAGATAGACGGAAGGAATTGACTAAAGTTGTATCAAAACAAGCTGAAGAAGGGAAGGTAGCATTGAGGAACATAAGAAGGGATACTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAGCTTGATACCATATCCAAACAGAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

281

Amino Acids

31.0

Weight (kDa)

9.63

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	117 - 279	6.4e-64	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20480 AT1G20490 AT1G20490 AT1G20500 AT1G20510 AT1G20510 AT1G20510 AT5G38120 AT5G38120 AT5G38120 AT5G38120
fragaria_vesca	FvH4_2g37640 FvH4_2g37640 FvH4_2g37640 FvH4_2g37640
malus_domestica	MD08G1004000.v1.1 MD15G1003500.v1.1
prunus_persica	Prupe.1G355900_v2.0.a1
pyrus_communis	pycom15g00250
rosa_chinensis	RchiOBHm_Chr6g0304091
rosa_laevigata	RLG00000011015
rosa_multiflora	Rmu_sc0003805.1_g000004 Rmu_sc0030558.1_g000003
rosa_roxburghii	Rroxscaffold_7G00164090
rosa_rugosa	Rorug06G0327500
rosa_samantha	Rh6AG441500 Rh6BG461300 Rh6CG453600 Rh6DG440900
rosa_wichuraiana	Rw6G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 287
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	672, 698
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	133, 348
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	275, 341, 361, 442, 759
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	161, 191, 263
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	3 cut(s)	148, 178, 275
BccI	CCATC	4 cut(s)	47, 319, 464, 563
BceAI	ACGGC	1 cut(s)	599
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciVI	GTATCC	2 cut(s)	682, 733
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	192
BfuI	GTATCC	2 cut(s)	682, 733
BisI	GCNGC	3 cut(s)	162, 192, 264
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	3 cut(s)	163, 193, 265
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	129, 431
BseGI	GGATG	2 cut(s)	39, 330
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	171, 726
BseNI	ACTGG	2 cut(s)	129, 431
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	148, 178, 275
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	530
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	530
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp143I	GATC	3 cut(s)	300, 350, 544
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	99, 287
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	2 cut(s)	170, 727
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	129, 431
BssMI	GATC	3 cut(s)	300, 350, 544
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	4 cut(s)	36, 136, 256, 346
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	125, 385
BstDEI	CTNAG	3 cut(s)	157, 195, 735
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	39, 330
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	303, 353, 547
BstMBI	GATC	3 cut(s)	300, 350, 544
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 153, 235, 389, 444, 536, 592
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	148, 178, 275
BsuI	GTATCC	2 cut(s)	682, 733
BsuRI	GGCC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	39, 330
Cac8I	GCNNGC	2 cut(s)	125, 385
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	132, 347
CviAII	CATG	3 cut(s)	150, 394, 553
CviQI	GTAC	2 cut(s)	132, 347
DdeI	CTNAG	3 cut(s)	157, 195, 735
DpnI	GATC	3 cut(s)	302, 352, 546
DpnII	GATC	3 cut(s)	300, 350, 544
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	2 cut(s)	672, 698
EcoICRI	GAGCTC	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	3 cut(s)	153, 397, 556
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	3 cut(s)	149, 393, 552
Fnu4HI	GCNGC	3 cut(s)	162, 192, 264
FokI	GGATG	2 cut(s)	26, 337
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	162, 192, 264
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	162, 192, 264
GsaI	CCCAGC	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	153, 397, 556
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	2 cut(s)	699, 797
HinfI	GANTC	3 cut(s)	25, 89, 556
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	104, 415
Hpy188I	TCNGA	4 cut(s)	544, 610, 717, 736
Hpy188III	TCNNGA	2 cut(s)	86, 467
Hpy8I	GTNNAC	2 cut(s)	104, 415
HpyAV	CCTTC	8 cut(s)	520, 613, 650, 655, 678, 712, 820, 832
HpyCH4III	ACNGT	4 cut(s)	36, 136, 256, 346
HpyCH4V	TGCA	4 cut(s)	32, 104, 238, 769
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 153, 235, 389, 444, 536, 592
HpyF3I	CTNAG	3 cut(s)	157, 195, 735
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	153, 397, 556
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	300, 350, 544
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	3 cut(s)	148, 178, 275
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	302, 352, 546
MboI	GATC	3 cut(s)	300, 350, 544
MboII	GAAGA	6 cut(s)	127, 235, 287, 454, 665, 805
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	6 cut(s)	230, 355, 361, 456, 623, 830
MlyI	GAGTC	2 cut(s)	19, 550
MmeI	TCCRAC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	3 cut(s)	138, 512, 695
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	7 cut(s)	29, 153, 235, 389, 444, 536, 592
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	300, 350, 544
NlaIII	CATG	3 cut(s)	153, 397, 556
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	163, 193, 265
PleI	GAGTC	2 cut(s)	19, 550
PpsI	GAGTC	2 cut(s)	19, 550
Psp124BI	GAGCTC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	133, 348
RsaNI	GTAC	2 cut(s)	132, 347
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	138, 512, 695
SatI	GCNGC	3 cut(s)	162, 192, 264
Sau3AI	GATC	3 cut(s)	300, 350, 544
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	19, 550
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	106, 149, 158
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	6 cut(s)	230, 355, 361, 456, 623, 830
SsiI	CCGC	2 cut(s)	99, 287
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	4 cut(s)	36, 136, 256, 346
TaqI	TCGA	2 cut(s)	85, 303
TasI	AATT	6 cut(s)	230, 355, 361, 456, 623, 830
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	138, 512, 695
Tru9I	TTAA	3 cut(s)	138, 512, 695
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	161, 191, 263
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	720
TspGWI	ACGGA	1 cut(s)	631
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.