Rorug07G0022800

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012377
Physical Location & Seq
Reverse (-)
1648020 .. 1651674
3655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0022800.1

Sequence Viewer

Length: 1143 bp
ATGCCTGTTCTTACAGAGAGCTCAGAGCACATGAAATGGAGAAGACCCAGAAGCCAATTAATCCAGCCCATTTCAGAAACAGATCCATACAACCCAAATCCAGCACCATCCATAATCCAATCCACTCGCTGCAAATCCACAATCTCCTCCCTCCTCCTCTCCAGCTTCACCACCACCACCACCACCAATGAAGCCTCATCCTCAAGCCTCAGCACCAAGAAGAAGACAAACTTCCCCTCATCAGCAAAGTTCAGAGGCATGGGCTGCACAGCCTCAGCCTCACAGCAAGTCTCAGTGCCAGCTGTGATCAGGAGCTCAGCAGATTGGGAAGGGAAGAAGGTGAAGAAGAAAAAGGTTAATAAGAAGAATGTCAGGAATGAGTTCAAGGACAAGAGCCAGAACCAAGGAGTGGTTGATGGGCCTGTTGGGTTTGGGTTGAATTCTGCAACTTGTATGGATTTTCAGGATGTTTGGTGTGGGCCTGGAATTGGGTTCTCAGCAGAGACTGCTGGCTCTGTGGATTGTGTTGTGGCTAGGAGAAATGTTTCTGGAAGAGGCAAGATTGATGGGGATCATAATAGGATGAACAGCCACAGGGAGGTACGTCCTTGTTTAGCAAGGCGAACTGTGAACCCGGATACTATCTCGTTTCTTGATTCTGAACCTGAATTCCTCTTAAGCCGCCCTGGATCAGAGGTGTTTGGAAGTAGGTGTTATCGACATGTTCGCCATGCCTCTCCTGAAGGCCTCGCAGAGATTATGATGTTTCAAAGTAGTCTTATGATGGGTGGAAGATCAGACATGGATAGATATAGAGAGTGGAGACTTGATGTTGATAACATGACATACGAGGAACTGCTTGAGTTAGGTGAGAGAATTGGTTATGTGAGTACTGGATTAAAAGAAGATGAGATAAGCCGGTGCCTTCGAAAAATTAAGCTATCAATGTTGAGTGATCGGTCACAACATTCACCTGGGCAAATAGATGGCAAGTGCATCATTTGTCAGGAGGAATATGAAGCAGATGATGAGATGGGTAGACTGAATTGTGGACACCTCTTCCACTTACAGTGTATAGAACAGTGGCTTGCTCATAAAAATACTTGCCCTTTTTGTAAGGTTGAAGCGACAACTAAACGCTAG

Protein Analysis

380

Amino Acids

42.54

Weight (kDa)

8.69

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 327 - 373 1.1e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 331 - 373 8e-15 Ring finger domain
zf-C3HC4_2 PF13923 331 - 372 3.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 331 - 373 3.7e-06 zinc-RING finger domain
zf-C3HC4 PF00097 332 - 372 2.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 332 - 370 5.6e-07 RING-type zinc-finger
zf-RING_11 PF17123 332 - 359 2.5e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41800
fragaria_vesca FvH4_5g04130 FvH4_5g04130 FvH4_5g04130
malus_domestica MD06G1103100.v1.1 MD14G1122000.v1.1
prunus_persica Prupe.5G115900_v2.0.a1 Prupe.5G115900_v2.0.a1 Prupe.5G115900_v2.0.a1 Prupe.5G115900_v2.0.a1
pyrus_communis pycom06g09770
rosa_chinensis RchiOBHm_Chr7g0195361
rosa_laevigata RLG00000004127
rosa_multiflora Rmu_sc0007366.1_g000004
rosa_roxburghii Rroxscaffold_3G00260540
rosa_rugosa Rorug07G0022800
rosa_samantha Rh7AG150000 Rh7DG151100
rosa_wichuraiana Rw7G012800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 921
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 1 cut(s) 1039
AciI CCGC 1 cut(s) 682
AclWI GGATC 3 cut(s) 77, 579, 697
AcsI RAATTY 2 cut(s) 439, 668
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 603, 892
AfiI CCNNNNNNNGG 3 cut(s) 409, 488, 598
AflII CTTAAG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 4 cut(s) 385, 439, 770, 1124
AjnI CCWGG 3 cut(s) 481, 685, 973
AloI GAACNNNNNNTCC 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 21, 165, 302, 315, 940
AluI AGCT 5 cut(s) 21, 165, 302, 315, 940
Alw21I GWGCWC 3 cut(s) 23, 30, 317
Alw26I GTCTC 3 cut(s) 295, 497, 817
AlwI GGATC 3 cut(s) 77, 579, 697
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 3 cut(s) 419, 479, 745
ApeKI GCWGC 2 cut(s) 129, 264
ApoI RAATTY 2 cut(s) 439, 668
AseI ATTAAT 1 cut(s) 59
Asp700I GAANNNNTTC 2 cut(s) 380, 544
AspS9I GGNCC 2 cut(s) 419, 479
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 4 cut(s) 160, 352, 881, 963
AsuII TTCGAA 1 cut(s) 928
BanI GGYRCC 1 cut(s) 921
BanII GRGCYC 2 cut(s) 23, 317
BbsI GAAGAC 2 cut(s) 49, 230
Bbv12I GWGCWC 3 cut(s) 23, 30, 317
BbvCI CCTCAGC 2 cut(s) 209, 274
BbvI GCAGC 2 cut(s) 116, 251
BccI CCATC 6 cut(s) 115, 410, 560, 778, 980, 1027
BciT130I CCWGG 3 cut(s) 483, 687, 975
BciVI GTATCC 1 cut(s) 631
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 3 cut(s) 295, 497, 817
BfaI CTAG 2 cut(s) 534, 1141
BfrI CTTAAG 1 cut(s) 676
BfuI GTATCC 1 cut(s) 631
BisI GCNGC 3 cut(s) 130, 265, 682
BlpI GCTNAGC 1 cut(s) 316
BlsI GCNGC 3 cut(s) 131, 266, 683
BmcAI AGTACT 1 cut(s) 892
Bme1390I CCNGG 4 cut(s) 483, 635, 687, 975
BmgT120I GGNCC 2 cut(s) 419, 479
BmiI GGNNCC 1 cut(s) 923
BmrFI CCNGG 4 cut(s) 483, 635, 687, 975
BmsI GCATC 1 cut(s) 1005
BpiI GAAGAC 2 cut(s) 49, 230
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 2 cut(s) 209, 274
Bpu1102I GCTNAGC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 928
BpuEI CTTGAG 2 cut(s) 187, 881
BpuMI CCSGG 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 403, 685, 974
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 488, 598
Bse118I RCCGGY 1 cut(s) 918
Bse1I ACTGG 1 cut(s) 898
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 3 cut(s) 483, 687, 975
BseDI CCNNGG 3 cut(s) 403, 685, 974
BseGI GGATG 4 cut(s) 107, 197, 472, 588
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 3 cut(s) 409, 488, 598
BseMII CTCAG 6 cut(s) 36, 223, 288, 306, 330, 510
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 3 cut(s) 136, 143, 146
BseXI GCAGC 2 cut(s) 116, 251
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 3 cut(s) 421, 481, 747
BshNI GGYRCC 1 cut(s) 921
BsiHKAI GWGCWC 3 cut(s) 23, 30, 317
BsiSI CCGG 2 cut(s) 635, 919
BslI CCNNNNNNNGG 3 cut(s) 409, 488, 598
BsmAI GTCTC 3 cut(s) 295, 497, 817
BsnI GGCC 3 cut(s) 421, 481, 747
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 3 cut(s) 23, 30, 317
Bsp143I GATC 6 cut(s) 82, 306, 571, 689, 794, 955
Bsp1720I GCTNAGC 1 cut(s) 316
BspACI CCGC 1 cut(s) 682
BspANI GGCC 3 cut(s) 421, 481, 747
BspCNI CTCAG 6 cut(s) 35, 222, 287, 305, 329, 509
BspLI GGNNCC 1 cut(s) 923
BspPI GGATC 3 cut(s) 77, 579, 697
BspT104I TTCGAA 1 cut(s) 928
BspT107I GGYRCC 1 cut(s) 921
BspTI CTTAAG 1 cut(s) 676
BsrFI RCCGGY 1 cut(s) 918
BsrI ACTGG 1 cut(s) 898
BssAI RCCGGY 1 cut(s) 918
BssECI CCNNGG 3 cut(s) 403, 685, 974
BssMI GATC 6 cut(s) 82, 306, 571, 689, 794, 955
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 3 cut(s) 483, 687, 975
Bst4CI ACNGT 3 cut(s) 628, 1071, 1083
Bst6I CTCTTC 2 cut(s) 547, 1064
BstAFI CTTAAG 1 cut(s) 676
BstAPI GCANNNNNTGC 2 cut(s) 264, 506
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 3 cut(s) 300, 511, 1089
BstDEI CTNAG 6 cut(s) 22, 209, 274, 292, 316, 496
BstF5I GGATG 4 cut(s) 107, 197, 472, 588
BstKTI GATC 6 cut(s) 85, 309, 574, 692, 797, 958
BstMAI GTCTC 3 cut(s) 295, 497, 817
BstMBI GATC 6 cut(s) 82, 306, 571, 689, 794, 955
BstMWI GCNNNNNNNGC 2 cut(s) 264, 506
BstNI CCWGG 3 cut(s) 483, 687, 975
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 4 cut(s) 481, 633, 685, 973
BstV1I GCAGC 2 cut(s) 116, 251
BstV2I GAAGAC 2 cut(s) 49, 230
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 421, 481, 747
BtsCI GGATG 4 cut(s) 107, 197, 472, 588
BtsIMutI CAGTG 3 cut(s) 300, 1076, 1088
Cac8I GCNNGC 3 cut(s) 300, 511, 1089
CaiI CAGNNNCTG 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 918
Cfr13I GGNCC 2 cut(s) 419, 479
Csp6I GTAC 2 cut(s) 602, 891
CviAII CATG 6 cut(s) 31, 259, 722, 731, 802, 841
CviQI GTAC 2 cut(s) 602, 891
DdeI CTNAG 6 cut(s) 22, 209, 274, 292, 316, 496
DpnI GATC 6 cut(s) 84, 308, 573, 691, 796, 957
DpnII GATC 6 cut(s) 82, 306, 571, 689, 794, 955
Eam1104I CTCTTC 2 cut(s) 547, 1064
EarI CTCTTC 2 cut(s) 547, 1064
Ecl136II GAGCTC 2 cut(s) 21, 315
Eco130I CCWWGG 1 cut(s) 403
Eco147I AGGCCT 1 cut(s) 747
Eco24I GRGCYC 2 cut(s) 23, 317
Eco53kI GAGCTC 2 cut(s) 21, 315
Eco57I CTGAAG 1 cut(s) 762
EcoICRI GAGCTC 2 cut(s) 21, 315
EcoRI GAATTC 2 cut(s) 439, 668
EcoRII CCWGG 3 cut(s) 481, 685, 973
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 2 cut(s) 23, 317
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 6 cut(s) 34, 262, 725, 734, 805, 844
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 6 cut(s) 30, 258, 721, 730, 801, 840
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 3 cut(s) 130, 265, 682
FokI GGATG 4 cut(s) 94, 184, 479, 595
FriOI GRGCYC 2 cut(s) 23, 317
Fsp4HI GCNGC 3 cut(s) 130, 265, 682
FspBI CTAG 2 cut(s) 534, 1141
GluI GCNGC 3 cut(s) 130, 265, 682
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 3 cut(s) 421, 481, 747
HapII CCGG 2 cut(s) 635, 919
Hin1II CATG 6 cut(s) 34, 262, 725, 734, 805, 844
HinfI GANTC 1 cut(s) 656
HpaII CCGG 2 cut(s) 635, 919
HphI GGTGA 4 cut(s) 160, 352, 881, 963
Hpy166II GTNNAC 3 cut(s) 631, 1040, 1052
Hpy188I TCNGA 6 cut(s) 25, 76, 254, 661, 694, 799
Hpy188III TCNNGA 7 cut(s) 310, 373, 464, 549, 653, 740, 1007
Hpy8I GTNNAC 3 cut(s) 631, 1040, 1052
HpyAV CCTTC 4 cut(s) 323, 331, 737, 935
HpyCH4III ACNGT 3 cut(s) 628, 1071, 1083
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 4 cut(s) 132, 267, 446, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 506
HpyF3I CTNAG 6 cut(s) 22, 209, 274, 292, 316, 496
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 6 cut(s) 34, 262, 725, 734, 805, 844
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 6 cut(s) 82, 306, 571, 689, 794, 955
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 2 cut(s) 116, 251
LweI GCATC 1 cut(s) 1005
MaeI CTAG 2 cut(s) 534, 1141
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 1 cut(s) 960
MalI GATC 6 cut(s) 84, 308, 573, 691, 796, 957
MboI GATC 6 cut(s) 82, 306, 571, 689, 794, 955
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 23, 30, 317
MluCI AATT 7 cut(s) 56, 439, 486, 668, 876, 933, 1045
MroXI GAANNNNTTC 2 cut(s) 380, 544
MseI TTAA 5 cut(s) 59, 357, 677, 899, 936
MspA1I CMGCKG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 676
MspI CCGG 2 cut(s) 635, 919
MspR9I CCNGG 4 cut(s) 483, 635, 687, 975
MvaI CCWGG 3 cut(s) 483, 687, 975
MwoI GCNNNNNNNGC 2 cut(s) 264, 506
NciI CCSGG 1 cut(s) 635
NdeII GATC 6 cut(s) 82, 306, 571, 689, 794, 955
NlaIII CATG 6 cut(s) 34, 262, 725, 734, 805, 844
NlaIV GGNNCC 1 cut(s) 923
NmuCI GTSAC 1 cut(s) 960
NspI RCATGY 1 cut(s) 725
NspV TTCGAA 1 cut(s) 928
PceI AGGCCT 1 cut(s) 747
PciI ACATGT 1 cut(s) 721
PdmI GAANNNNTTC 2 cut(s) 380, 544
PfeI GAWTC 1 cut(s) 656
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 3 cut(s) 131, 266, 683
PscI ACATGT 1 cut(s) 721
PshBI ATTAAT 1 cut(s) 59
Psp124BI GAGCTC 2 cut(s) 23, 317
Psp6I CCWGG 3 cut(s) 481, 685, 973
PspGI CCWGG 3 cut(s) 481, 685, 973
PspN4I GGNNCC 1 cut(s) 923
PspPI GGNCC 2 cut(s) 419, 479
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 603, 892
RsaNI GTAC 2 cut(s) 602, 891
SacI GAGCTC 2 cut(s) 23, 317
SaqAI TTAA 5 cut(s) 59, 357, 677, 899, 936
SatI GCNGC 3 cut(s) 130, 265, 682
Sau3AI GATC 6 cut(s) 82, 306, 571, 689, 794, 955
Sau96I GGNCC 2 cut(s) 419, 479
ScaI AGTACT 1 cut(s) 892
ScrFI CCNGG 4 cut(s) 483, 635, 687, 975
SduI GDGCHC 3 cut(s) 23, 30, 317
SfaNI GCATC 1 cut(s) 1005
SfuI TTCGAA 1 cut(s) 928
SmlI CTYRAG 3 cut(s) 202, 676, 860
SmoI CTYRAG 3 cut(s) 202, 676, 860
Sse9I AATT 7 cut(s) 56, 439, 486, 668, 876, 933, 1045
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 1 cut(s) 682
SspMI CTAG 2 cut(s) 534, 1141
SstI GAGCTC 2 cut(s) 23, 317
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 4 cut(s) 481, 633, 685, 973
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 3 cut(s) 628, 1071, 1083
TaiI ACGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 718, 928
TaqII GACCGA 1 cut(s) 948
TasI AATT 7 cut(s) 56, 439, 486, 668, 876, 933, 1045
TatI WGTACW 1 cut(s) 890
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 5 cut(s) 59, 357, 677, 899, 936
Tru9I TTAA 5 cut(s) 59, 357, 677, 899, 936
TscAI CASTG 3 cut(s) 300, 1076, 1088
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 2 cut(s) 129, 264
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 4 cut(s) 47, 204, 599, 1032
TspRI CASTG 3 cut(s) 300, 1076, 1088
Van91I CCANNNNNTGG 1 cut(s) 409
Vha464I CTTAAG 1 cut(s) 676
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 439, 668
XceI RCATGY 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 1039
XmnI GAANNNNTTC 2 cut(s) 380, 544
XspI CTAG 2 cut(s) 534, 1141
ZrmI AGTACT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.