Rw7G012800

GABA transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012377
Physical Location & Seq
Reverse (-)
12173410 .. 12178234
4825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012800.1

Sequence Viewer

Length: 1002 bp
ATGATGCCTGAGCCTCCGAACCCGCAACCGTTCCTCGACGACGAAGGCCCCGAGCCTGCCCGCGACACCGACGCCGGCGCCGTCTTCGTCCTCCAATCCAAAGGGCAGTGGTGGCACGCCGGGTTCCATCTGACGACGGCGATAGTGGGGCCGACGATTCTGACGCTGCCGTACGCGTTTCGAGGGCTGGGATGGCCGGTGGGGTTCCTCTGCTTGACCGCCATGGGAATCGTCACGTTCTACTCCTACTACCTCATGTCCAAGGTCCTCGACTACTGCGAGAAGGCCGGCCGCCGCCACATCAGATTCCGGGAGCTCGCCGCCGACGTGTTAGGGTCAGGATGGATGTTCTACTTTGTGATATTCATTCAGACAGCCATAAACACTGGGGTTGGAATTGGAGCAATTTTGCTTGCTGGAGAATGCATTAAGATTATGTATACAGAACTTTCTCCAAATGGATCCCTGAAATTGTACCACTTCATAGCCATGGTTACCGTGGTAATGATAGTCATCTCTCAACTACCATCTTTCCACTCCCTCAGACATATCAACCTTGGTTCGCTGCTTCTCAGCTTGGGCTACTCCTTCTTGGTGGTTGTTGCGTGTGTTTATGCAGGTACCTCTAAGAATGCCCCTCAAAGGGACTACTCCCTAGATTCTTCGGCATCAATAAGGGTCTTCAATGCCTTCACTTCCATCTCCATAATAGCTGCTATCTTTGGGAACGGCATACTACCTGAAATACAAGCAACATTGGCGCCACCAGCTACTGGAAAGATGGTAAAAGGTCTTGTAATGTGTTACACAGTAATTTTCATTACATTCTATGCCACTGCAGTGTCTGGTTACTGGGTGTTTGGGAATAAGTCTAGTTCAAACATTCTAGAGAGCCTAATGCCAGATGAAGGGCCTTCTTTGGCTCCAACATGGGTCCTTGGTCTTGCTGTGGTATTTGTTCTCCTTCAGCTTCTTGCCATTGGCCTGGTAAGTTCTTGTTAA

Protein Analysis

333

Amino Acids

36.15

Weight (kDa)

6.58

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 34 - 325 6e-49 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41800
fragaria_vesca FvH4_5g04130 FvH4_5g04130 FvH4_5g04130
malus_domestica MD06G1103100.v1.1 MD14G1122000.v1.1
prunus_persica Prupe.5G115900_v2.0.a1 Prupe.5G115900_v2.0.a1 Prupe.5G115900_v2.0.a1 Prupe.5G115900_v2.0.a1
pyrus_communis pycom06g09770
rosa_chinensis RchiOBHm_Chr7g0195361
rosa_laevigata RLG00000004127
rosa_multiflora Rmu_sc0007366.1_g000004
rosa_roxburghii Rroxscaffold_3G00260540
rosa_rugosa Rorug07G0022800
rosa_samantha Rh7AG150000 Rh7DG151100
rosa_wichuraiana Rw7G012800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 608
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 3 cut(s) 77, 620, 760
AccB7I CCANNNNNTGG 1 cut(s) 773
AccI GTMKAC 1 cut(s) 440
AccII CGCG 2 cut(s) 63, 176
AciI CCGC 6 cut(s) 23, 61, 219, 292, 295, 321
AclWI GGATC 2 cut(s) 456, 469
AcoI YGGCCR 2 cut(s) 194, 289
AcuI CTGAAG 1 cut(s) 950
AcyI GRCGYC 3 cut(s) 72, 78, 761
AfaI GTAC 3 cut(s) 173, 476, 622
AfiI CCNNNNNNNGG 4 cut(s) 642, 643, 773, 908
AflIII ACRYGT 2 cut(s) 174, 327
AgsI TTSAA 2 cut(s) 685, 879
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 1 cut(s) 984
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 5 cut(s) 316, 576, 713, 770, 970
AluI AGCT 5 cut(s) 316, 576, 713, 770, 970
Alw21I GWGCWC 1 cut(s) 318
AlwI GGATC 2 cut(s) 456, 469
AlwNI CAGNNNCTG 2 cut(s) 773, 845
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 7 cut(s) 46, 149, 194, 285, 289, 911, 982
ApeKI GCWGC 3 cut(s) 166, 565, 713
Asp718I GGTACC 1 cut(s) 620
AspLEI GCGC 2 cut(s) 80, 763
AspS9I GGNCC 5 cut(s) 47, 149, 265, 911, 934
AsuC2I CCSGG 2 cut(s) 121, 311
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 2 cut(s) 265, 934
BamHI GGATCC 1 cut(s) 461
BanI GGYRCC 3 cut(s) 77, 620, 760
BanII GRGCYC 1 cut(s) 318
BbsI GAAGAC 2 cut(s) 76, 673
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 153, 552, 700
BccI CCATC 6 cut(s) 135, 186, 336, 535, 707, 775
BceAI ACGGC 4 cut(s) 65, 153, 154, 745
BciT130I CCWGG 1 cut(s) 986
BcnI CCSGG 2 cut(s) 121, 311
BfaI CTAG 3 cut(s) 656, 873, 887
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 2 cut(s) 81, 764
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 6 cut(s) 167, 292, 295, 321, 566, 714
BlsI GCNGC 6 cut(s) 168, 293, 296, 322, 567, 715
Bme1390I CCNGG 3 cut(s) 121, 311, 986
Bme18I GGWCC 2 cut(s) 265, 934
BmeT110I CYCGRG 1 cut(s) 50
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 5 cut(s) 47, 149, 265, 911, 934
BmrFI CCNGG 3 cut(s) 121, 311, 986
BmrI ACTGGG 2 cut(s) 396, 862
BmsI GCATC 1 cut(s) 677
BmuI ACTGGG 2 cut(s) 396, 862
BpiI GAAGAC 2 cut(s) 76, 673
BpmI CTGGAG 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 121, 311
BsaBI GATNNNNATC 1 cut(s) 512
BsaHI GRCGYC 3 cut(s) 72, 78, 761
BsaJI CCNNGG 6 cut(s) 222, 261, 489, 498, 556, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 642, 643, 773, 908
Bse118I RCCGGY 3 cut(s) 74, 196, 287
Bse1I ACTGG 3 cut(s) 391, 778, 857
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 6 cut(s) 222, 261, 489, 498, 556, 937
BseGI GGATG 3 cut(s) 197, 347, 351
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 4 cut(s) 642, 643, 773, 908
BseMII CTCAG 2 cut(s) 556, 586
BseNI ACTGG 3 cut(s) 391, 778, 857
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 3 cut(s) 153, 552, 700
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 2 cut(s) 63, 176
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 7 cut(s) 48, 151, 196, 287, 291, 913, 984
BshNI GGYRCC 3 cut(s) 77, 620, 760
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 5 cut(s) 75, 120, 197, 288, 310
BsiWI CGTACG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 4 cut(s) 642, 643, 773, 908
BsmFI GGGAC 1 cut(s) 659
BsmI GAATGC 2 cut(s) 428, 637
BsnI GGCC 7 cut(s) 48, 151, 196, 287, 291, 913, 984
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 461
Bsp19I CCATGG 2 cut(s) 222, 489
BspACI CCGC 6 cut(s) 23, 61, 219, 292, 295, 321
BspANI GGCC 7 cut(s) 48, 151, 196, 287, 291, 913, 984
BspCNI CTCAG 2 cut(s) 555, 585
BspFNI CGCG 2 cut(s) 63, 176
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 2 cut(s) 456, 469
BspT107I GGYRCC 3 cut(s) 77, 620, 760
BsrFI RCCGGY 3 cut(s) 74, 196, 287
BsrI ACTGG 3 cut(s) 391, 778, 857
BssAI RCCGGY 3 cut(s) 74, 196, 287
BssECI CCNNGG 6 cut(s) 222, 261, 489, 498, 556, 937
BssMI GATC 1 cut(s) 461
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 3 cut(s) 72, 78, 761
BssT1I CCWWGG 5 cut(s) 222, 261, 489, 556, 937
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 3 cut(s) 30, 499, 811
BstACI GRCGYC 3 cut(s) 72, 78, 761
BstC8I GCNNGC 7 cut(s) 57, 61, 76, 117, 289, 318, 414
BstDEI CTNAG 4 cut(s) 9, 542, 572, 627
BstDSI CCRYGG 3 cut(s) 222, 489, 498
BstEII GGTNACC 1 cut(s) 493
BstF5I GGATG 3 cut(s) 197, 347, 351
BstFNI CGCG 2 cut(s) 63, 176
BstH2I RGCGCY 2 cut(s) 81, 764
BstHHI GCGC 2 cut(s) 80, 763
BstKTI GATC 1 cut(s) 464
BstMBI GATC 1 cut(s) 461
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 112, 193, 758, 767
BstNI CCWGG 1 cut(s) 986
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 119, 309, 984
BstSFI CTRYAG 1 cut(s) 837
BstUI CGCG 2 cut(s) 63, 176
BstV1I GCAGC 3 cut(s) 153, 552, 700
BstV2I GAAGAC 2 cut(s) 76, 673
BstX2I RGATCY 1 cut(s) 461
BstXI CCANNNNNNTGG 1 cut(s) 985
BstYI RGATCY 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 441
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 7 cut(s) 48, 151, 196, 287, 291, 913, 984
BtgI CCRYGG 3 cut(s) 222, 489, 498
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 3 cut(s) 197, 347, 351
BtsI GCAGTG 3 cut(s) 113, 834, 846
BtsIMutI CAGTG 4 cut(s) 113, 384, 834, 846
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 7 cut(s) 57, 61, 76, 117, 289, 318, 414
CaiI CAGNNNCTG 2 cut(s) 773, 845
CfoI GCGC 2 cut(s) 80, 763
Cfr10I RCCGGY 3 cut(s) 74, 196, 287
Cfr13I GGNCC 5 cut(s) 47, 149, 265, 911, 934
CseI GACGC 2 cut(s) 80, 172
Csp6I GTAC 3 cut(s) 172, 475, 621
CviAII CATG 4 cut(s) 223, 256, 490, 930
CviQI GTAC 3 cut(s) 172, 475, 621
DdeI CTNAG 4 cut(s) 9, 542, 572, 627
DinI GGCGCC 2 cut(s) 79, 762
DpnI GATC 1 cut(s) 463
DpnII GATC 1 cut(s) 461
EaeI YGGCCR 2 cut(s) 194, 289
EagI CGGCCG 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 316
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 5 cut(s) 222, 261, 489, 556, 937
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 265, 934
Eco52I CGGCCG 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 950
Eco88I CYCGRG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 4 cut(s) 47, 265, 911, 934
EcoO65I GGTNACC 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 984
EcoT14I CCWWGG 5 cut(s) 222, 261, 489, 556, 937
EcoT22I ATGCAT 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 318
EgeI GGCGCC 2 cut(s) 79, 762
EheI GGCGCC 2 cut(s) 79, 762
ErhI CCWWGG 5 cut(s) 222, 261, 489, 556, 937
FaeI CATG 4 cut(s) 226, 259, 493, 933
FaqI GGGAC 1 cut(s) 659
FatI CATG 4 cut(s) 222, 255, 489, 929
FauI CCCGC 2 cut(s) 30, 68
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 6 cut(s) 167, 292, 295, 321, 566, 714
FokI GGATG 3 cut(s) 204, 354, 358
FriOI GRGCYC 1 cut(s) 318
FseI GGCCGGCC 1 cut(s) 291
Fsp4HI GCNGC 6 cut(s) 167, 292, 295, 321, 566, 714
FspBI CTAG 3 cut(s) 656, 873, 887
GlaI GCGC 2 cut(s) 79, 762
GluI GCNGC 6 cut(s) 167, 292, 295, 321, 566, 714
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 2 cut(s) 81, 764
HaeIII GGCC 7 cut(s) 48, 151, 196, 287, 291, 913, 984
HapII CCGG 5 cut(s) 75, 120, 197, 288, 310
HgaI GACGC 2 cut(s) 80, 172
HhaI GCGC 2 cut(s) 80, 763
Hin1I GRCGYC 3 cut(s) 72, 78, 761
Hin1II CATG 4 cut(s) 226, 259, 493, 933
Hin6I GCGC 2 cut(s) 78, 761
HinP1I GCGC 2 cut(s) 78, 761
HinfI GANTC 4 cut(s) 157, 228, 306, 659
HpaII CCGG 5 cut(s) 75, 120, 197, 288, 310
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 6 cut(s) 18, 132, 162, 305, 372, 545
Hpy188III TCNNGA 2 cut(s) 339, 887
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 6 cut(s) 41, 44, 74, 139, 157, 329
HpyAV CCTTC 7 cut(s) 38, 277, 598, 700, 902, 924, 974
HpyCH4III ACNGT 3 cut(s) 30, 499, 811
HpyCH4IV ACGT 2 cut(s) 236, 327
HpyCH4V TGCA 3 cut(s) 426, 617, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 193, 758, 767
HpyF3I CTNAG 4 cut(s) 9, 542, 572, 627
HpySE526I ACGT 2 cut(s) 236, 327
Hsp92I GRCGYC 3 cut(s) 72, 78, 761
Hsp92II CATG 4 cut(s) 226, 259, 493, 933
HspAI GCGC 2 cut(s) 78, 761
KasI GGCGCC 2 cut(s) 77, 760
KpnI GGTACC 1 cut(s) 624
KroI GCCGGC 2 cut(s) 74, 287
KroNI GCCGGC 2 cut(s) 76, 289
Kzo9I GATC 1 cut(s) 461
LmnI GCTCC 3 cut(s) 313, 401, 928
Lsp1109I GCAGC 3 cut(s) 153, 552, 700
LweI GCATC 1 cut(s) 677
MaeI CTAG 3 cut(s) 656, 873, 887
MaeII ACGT 2 cut(s) 236, 327
MaeIII GTNAC 4 cut(s) 232, 493, 803, 848
MalI GATC 1 cut(s) 463
MboI GATC 1 cut(s) 461
MboII GAAGA 3 cut(s) 76, 654, 673
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 4 cut(s) 396, 405, 470, 813
MluI ACGCGT 1 cut(s) 174
Mly113I GGCGCC 2 cut(s) 78, 761
MmeI TCCRAC 2 cut(s) 373, 950
Mph1103I ATGCAT 1 cut(s) 428
MreI CGCCGGCG 1 cut(s) 74
MroNI GCCGGC 2 cut(s) 74, 287
MseI TTAA 2 cut(s) 429, 1000
MslI CAYNNNNRTG 2 cut(s) 488, 839
MspI CCGG 5 cut(s) 75, 120, 197, 288, 310
MspR9I CCNGG 3 cut(s) 121, 311, 986
Mva1269I GAATGC 2 cut(s) 428, 637
MvaI CCWGG 1 cut(s) 986
MvnI CGCG 2 cut(s) 63, 176
MwoI GCNNNNNNNGC 4 cut(s) 112, 193, 758, 767
NaeI GCCGGC 2 cut(s) 76, 289
NarI GGCGCC 2 cut(s) 78, 761
NciI CCSGG 2 cut(s) 121, 311
NcoI CCATGG 2 cut(s) 222, 489
NdeII GATC 1 cut(s) 461
NgoMIV GCCGGC 2 cut(s) 74, 287
NlaIII CATG 4 cut(s) 226, 259, 493, 933
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 428
OliI CACNNNNGTG 1 cut(s) 839
PcsI WCGNNNNNNNCGW 4 cut(s) 48, 78, 276, 324
PctI GAATGC 2 cut(s) 428, 637
PdiI GCCGGC 2 cut(s) 76, 289
PfeI GAWTC 4 cut(s) 157, 228, 306, 659
Pfl23II CGTACG 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 773
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 6 cut(s) 168, 293, 296, 322, 567, 715
PluTI GGCGCC 2 cut(s) 81, 764
PpuMI RGGWCCY 2 cut(s) 265, 934
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 2 cut(s) 265, 934
Psp6I CCWGG 1 cut(s) 984
PspEI GGTNACC 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 984
PspLI CGTACG 1 cut(s) 171
PspPI GGNCC 5 cut(s) 47, 149, 265, 911, 934
PspPPI RGGWCCY 2 cut(s) 265, 934
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 2 cut(s) 773, 845
PsuI RGATCY 1 cut(s) 461
RigI GGCCGGCC 1 cut(s) 291
RsaI GTAC 3 cut(s) 173, 476, 622
RsaNI GTAC 3 cut(s) 172, 475, 621
RseI CAYNNNNRTG 2 cut(s) 488, 839
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 2 cut(s) 429, 1000
SatI GCNGC 6 cut(s) 167, 292, 295, 321, 566, 714
Sau3AI GATC 1 cut(s) 461
Sau96I GGNCC 5 cut(s) 47, 149, 265, 911, 934
ScrFI CCNGG 3 cut(s) 121, 311, 986
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 1 cut(s) 837
SfoI GGCGCC 2 cut(s) 79, 762
SgrAI CRCCGGYG 1 cut(s) 74
SinI GGWCC 2 cut(s) 265, 934
SmiMI CAYNNNNRTG 2 cut(s) 488, 839
Sse9I AATT 4 cut(s) 396, 405, 470, 813
SsiI CCGC 6 cut(s) 23, 61, 219, 292, 295, 321
SspDI GGCGCC 2 cut(s) 77, 760
SspMI CTAG 3 cut(s) 656, 873, 887
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 119, 309, 984
StyI CCWWGG 5 cut(s) 222, 261, 489, 556, 937
TaaI ACNGT 3 cut(s) 30, 499, 811
TaiI ACGT 2 cut(s) 239, 330
TaqI TCGA 3 cut(s) 36, 181, 270
TasI AATT 4 cut(s) 396, 405, 470, 813
TauI GCSGC 3 cut(s) 294, 297, 323
TfiI GAWTC 4 cut(s) 157, 228, 306, 659
Tru1I TTAA 2 cut(s) 429, 1000
Tru9I TTAA 2 cut(s) 429, 1000
TscAI CASTG 4 cut(s) 113, 391, 841, 846
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 166, 565, 713
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 355, 472, 808, 921
TspRI CASTG 4 cut(s) 113, 391, 841, 846
Van91I CCANNNNNTGG 1 cut(s) 773
VpaK11BI GGWCC 2 cut(s) 265, 934
XbaI TCTAGA 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 3 cut(s) 656, 873, 887
Zsp2I ATGCAT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.