Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005888

Physical Location & Seq

Genomic Coordinates Reverse (-)

2438226 .. 2438812

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0034100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCAAACGAGAGACACTACTATCGTATCAATGTCTCTCAATCCCAAACAGTCGTCGAAACCTTCATCGACTGGACCCGATTTTCATCATCACCGGATCTGCTTCGACTTGAGTTTAAGCTCTTCAAGTCGGTAGAAAGCGTCTGGGTCGCAGACGATTGTGATGTTGGTGTCATCCATGATCAAACCATTAACCTGATCAAAGCTGAAGAACCAATAATGGTTACTCACACCAAGCTGTTTTCTGATCGAAGTAGCTCGATGATGAGAGGCATTCTCTCCGGCATGCATGTCCCAGAAGATGAGCAGCCAAATATTATTTTGCAAGTATTACATGGGATTAAAGTTGTGCTTGCAGAGCAGAGGGTTCGTGGCCTCGCTTCCATGCCTAATGTTCTTGTGGACATTTATGATGTGACTCTGCAGTTGCAAAACATCAATGATGATCAAACCTTTGGTCACAAACGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

18.03

Weight (kDa)

5.28

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64050 AT1G64050
fragaria_vesca	FvH4_5g03290 FvH4_5g03290 FvH4_5g03290
malus_domestica	MD06G1092500.v1.1 MD14G1113000.v1.1
prunus_persica	Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1 Prupe.5G107200_v2.0.a1
pyrus_communis	pycom06g08830 pycom14g10800
rosa_chinensis	RchiOBHm_Chr7g0196491
rosa_laevigata	RLG00000004009
rosa_multiflora	Rmu_sc0005497.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259250
rosa_rugosa	Rorug07G0034000 Rorug07G0034100
rosa_samantha	Rh7AG158300 Rh7BG160200 Rh7CG166600 Rh7DG159400
rosa_wichuraiana	Rw7G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	4 cut(s)	121, 206, 238, 258
AluI	AGCT	4 cut(s)	121, 206, 238, 258
Alw26I	GTCTC	2 cut(s)	7, 40
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	75
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BbvI	GCAGC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BclI	TGATCA	3 cut(s)	181, 198, 445
BcoDI	GTCTC	2 cut(s)	7, 40
BfmI	CTRYAG	1 cut(s)	422
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	85
BseGI	GGATG	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	95, 282
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	7, 40
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	97, 181, 198, 247, 445
BspANI	GGCC	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	5 cut(s)	97, 181, 198, 247, 445
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	287, 354
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	5 cut(s)	100, 184, 201, 250, 448
BstMAI	GTCTC	2 cut(s)	7, 40
BstMBI	GATC	5 cut(s)	97, 181, 198, 247, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	2 cut(s)	289, 293
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	287, 354
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	130
CviAII	CATG	5 cut(s)	179, 286, 290, 335, 385
CviJI	RGCY	6 cut(s)	121, 206, 238, 258, 310, 375
CviKI_1	RGCY	6 cut(s)	121, 206, 238, 258, 310, 375
DpnI	GATC	5 cut(s)	99, 183, 200, 249, 447
DpnII	GATC	5 cut(s)	97, 181, 198, 247, 445
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	291
FaeI	CATG	5 cut(s)	182, 289, 293, 338, 388
FaiI	YATR	6 cut(s)	180, 287, 291, 336, 386, 411
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	5 cut(s)	178, 285, 289, 334, 384
FbaI	TGATCA	3 cut(s)	181, 198, 445
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	95, 282
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	5 cut(s)	182, 289, 293, 338, 388
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	2 cut(s)	95, 282
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	289, 325, 356, 424, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
Hsp92II	CATG	5 cut(s)	182, 289, 293, 338, 388
Ksp22I	TGATCA	3 cut(s)	181, 198, 445
Kzo9I	GATC	5 cut(s)	97, 181, 198, 247, 445
LguI	GCTCTTC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	58, 108, 130, 209, 295, 309
Lsp1109I	GCAGC	1 cut(s)	319
MaeIII	GTNAC	3 cut(s)	223, 415, 458
MalI	GATC	5 cut(s)	99, 183, 200, 249, 447
MboI	GATC	5 cut(s)	97, 181, 198, 247, 445
MboII	GAAGA	3 cut(s)	115, 221, 311
MflI	RGATCY	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	3 cut(s)	263, 357, 386
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	3 cut(s)	117, 192, 342
MspI	CCGG	2 cut(s)	95, 282
Mva1269I	GAATGC	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	5 cut(s)	97, 181, 198, 247, 445
NlaIII	CATG	5 cut(s)	182, 289, 293, 338, 388
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	415, 458
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	2 cut(s)	289, 293
PaeI	GCATGC	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	128
PctI	GAATGC	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	117, 192, 342
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	5 cut(s)	97, 181, 198, 247, 445
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	412
SetI	ASST	7 cut(s)	65, 123, 198, 208, 240, 260, 455
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	289
SspI	AATATT	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	5 cut(s)	57, 69, 106, 250, 260
Tru1I	TTAA	3 cut(s)	117, 192, 342
Tru9I	TTAA	3 cut(s)	117, 192, 342
TseFI	GTSAC	2 cut(s)	415, 458
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	415, 458
TspDTI	ATGAA	2 cut(s)	55, 75
VpaK11BI	GGWCC	1 cut(s)	75
XceI	RCATGY	2 cut(s)	289, 293
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.