Rorug07G0132600

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018443
Physical Location & Seq
Reverse (-)
10447571 .. 10449222
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0132600.1

Sequence Viewer

Length: 939 bp
ATGAGTCCGCTATTTCTTGTGGTTGTAGTAGTTGTAGCTGTTATCTTCTTCATTGGTGGTCTTGTTCATTTGGTTTTAAGATTCTTCATAAAGAGGTCATCTTCCCCACTCTTTCAATCCAGTAATAGACACCCAGAAAGCTCTAGCTCTCGAAATCTTCGAAGACAGCTTCAACACCTCTTTCACTTACACGACTTGGGCCTGGACCAAGCTGTCATAGACTCTCTGCCTGTGTTCTGCTGCAAAGACATTGTTGGTTCAGATGAGCAGTTTGATTGTGCTATCTGTCTGTGTGAGTTTTCTGAGCAGGACAAGCTGAGGTTGCTCCCTAATTGTGGTCATGCATTTCATATGGATTGTATTGACACTTGGCTTCTCTCAAATTCAACATGCCCTCTTTGTAGAGGCACCCTTTTGGGCTCTGGTCTAGTATTGGAAAACCCAGTGTTGAATTTTGATGATTCTAGAGCAATGTCAAGTAGGTTCGATGGTGATGGAGACAATGGGGGTTTAAGTGGTCGGAGAGTCTTAGCTTTGGAGGAAGCTGGTGTCGAAAAGAGGGTGTTTTCGGTGAGACTTGGGAAGTTCAGGAGCTCGACGAACGAAGGAGTAGGAGAAACAAGCAGGTGTAATTTGGACGCTAGGAGATGCTACTCAATGGGGACATATCAGTATGTGGTTGGTGATTCAAATCTTCAAGTGGTCTTGTCGCATGATTGTGGTGGAGGCACTGATACTAAGCTTGACATTGATGATGAACACTTTGAAGTTGGTGGGAATTTGGAGGGGAAGAAAATCAATGGGTGTCATAAAGGTGAGAGCTTCTCTGTGTCCAAGATCTGGCTTTGGTCTAAGAAGAACAAATTCCCAGGCTCTTTGAATACTCATACCGGTATGCCTTCTTTTACTGTAACTTCTCCAATCTATGGTGGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC PP2C TIR VQ

Protein Analysis

312

Amino Acids

34.33

Weight (kDa)

6.25

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 90 - 137 5.9e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 92 - 135 1.2e-15 Ring finger domain
zf-RING_11 PF17123 92 - 121 2.8e-10 RING-like zinc finger
zf-rbx1 PF12678 92 - 135 1.1e-09 RING-H2 zinc finger domain
zf-RING_5 PF14634 92 - 135 4e-06 zinc-RING finger domain
zf-C3HC4 PF00097 93 - 134 6.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 93 - 134 1.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 93 - 132 7.1e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g16070 FvH4_5g16070 FvH4_5g16070 FvH4_5g16070 FvH4_5g16070
rosa_rugosa Rorug07G0132500 Rorug07G0132600
rosa_samantha Rh7AG265500 Rh7CG282200
rosa_wichuraiana Rw7G022730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 615
AasI GACNNNNNNGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 2 cut(s) 840, 926
AciI CCGC 1 cut(s) 8
AcsI RAATTY 4 cut(s) 382, 451, 778, 863
AfiI CCNNNNNNNGG 3 cut(s) 335, 840, 926
AgeI ACCGGT 1 cut(s) 890
AgsI TTSAA 8 cut(s) 116, 173, 387, 451, 690, 698, 767, 880
AjnI CCWGG 2 cut(s) 201, 868
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 2 cut(s) 492, 568
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 4 cut(s) 382, 451, 778, 863
AsiGI ACCGGT 1 cut(s) 890
Asp700I GAANNNNTTC 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 199, 205
AsuHPI GGTGA 4 cut(s) 503, 583, 695, 827
AsuII TTCGAA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 2 cut(s) 422, 596
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 227
BccI CCATC 2 cut(s) 482, 488
BciT130I CCWGG 2 cut(s) 203, 870
BcoDI GTCTC 2 cut(s) 492, 568
BfaI CTAG 4 cut(s) 144, 428, 465, 642
BfuAI ACCTGC 1 cut(s) 615
BglII AGATCT 1 cut(s) 837
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 203, 870
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 199, 205
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 203, 870
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 809, 841
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 868
BsaWI WCCGGW 1 cut(s) 890
Bsc4I CCNNNNNNNGG 3 cut(s) 335, 840, 926
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 2 cut(s) 120, 443
Bse3DI GCAATG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 2 cut(s) 203, 870
BseDI CCNNGG 1 cut(s) 868
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 335, 840, 926
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 294, 308
BseNI ACTGG 2 cut(s) 120, 443
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 890
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 1 cut(s) 891
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 3 cut(s) 335, 840, 926
BsmAI GTCTC 2 cut(s) 492, 568
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 1 cut(s) 201
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 422, 596
Bsp143I GATC 1 cut(s) 837
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 295, 309
BspLI GGNNCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 615
BspT104I TTCGAA 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 2 cut(s) 120, 443
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 1 cut(s) 837
Bst2UI CCWGG 2 cut(s) 203, 870
Bst4CI ACNGT 1 cut(s) 910
BstBI TTCGAA 1 cut(s) 160
BstDEI CTNAG 5 cut(s) 303, 317, 529, 738, 852
BstKTI GATC 1 cut(s) 840
BstMAI GTCTC 2 cut(s) 492, 568
BstMBI GATC 1 cut(s) 837
BstMWI GCNNNNNNNGC 2 cut(s) 313, 322
BstNI CCWGG 2 cut(s) 203, 870
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 2 cut(s) 201, 868
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 837
BstYI RGATCY 1 cut(s) 837
BsuRI GGCC 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 450, 729
BveI ACCTGC 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 2 cut(s) 199, 205
CseI GACGC 1 cut(s) 647
CspAI ACCGGT 1 cut(s) 890
CviAII CATG 4 cut(s) 341, 390, 713, 936
DdeI CTNAG 5 cut(s) 303, 317, 529, 738, 852
DpnI GATC 1 cut(s) 839
DpnII GATC 1 cut(s) 837
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 594
Eco24I GRGCYC 2 cut(s) 422, 596
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 594
EcoRII CCWGG 2 cut(s) 201, 868
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 2 cut(s) 422, 596
FaeI CATG 4 cut(s) 344, 393, 716, 939
FaqI GGGAC 1 cut(s) 676
FatI CATG 4 cut(s) 340, 389, 712, 935
FauNDI CATATG 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 241
FriOI GRGCYC 2 cut(s) 422, 596
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 4 cut(s) 144, 428, 465, 642
GluI GCNGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 891
HgaI GACGC 1 cut(s) 647
Hin1II CATG 4 cut(s) 344, 393, 716, 939
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 6 cut(s) 4, 81, 221, 461, 525, 686
HpaII CCGG 1 cut(s) 891
HphI GGTGA 4 cut(s) 503, 583, 695, 827
Hpy188I TCNGA 3 cut(s) 262, 304, 522
Hpy188III TCNNGA 3 cut(s) 150, 465, 589
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 2 cut(s) 599, 909
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4V TGCA 2 cut(s) 243, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 322
HpyF3I CTNAG 5 cut(s) 303, 317, 529, 738, 852
Hsp92II CATG 4 cut(s) 344, 393, 716, 939
Kzo9I GATC 1 cut(s) 837
LmnI GCTCC 2 cut(s) 330, 591
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 638
MaeI CTAG 4 cut(s) 144, 428, 465, 642
MaeIII GTNAC 1 cut(s) 910
MalI GATC 1 cut(s) 839
MboI GATC 1 cut(s) 837
MboII GAAGA 9 cut(s) 37, 40, 76, 93, 149, 174, 686, 802, 868
MflI RGATCY 1 cut(s) 837
MhlI GDGCHC 2 cut(s) 422, 596
MluCI AATT 6 cut(s) 331, 382, 451, 631, 778, 863
MlyI GAGTC 3 cut(s) 13, 215, 534
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 9 cut(s) 87, 188, 312, 398, 405, 532, 552, 719, 778
Mph1103I ATGCAT 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 2 cut(s) 77, 512
MslI CAYNNNNRTG 2 cut(s) 717, 813
MspI CCGG 1 cut(s) 891
MspR9I CCNGG 2 cut(s) 203, 870
MvaI CCWGG 2 cut(s) 203, 870
MwoI GCNNNNNNNGC 2 cut(s) 313, 322
NdeI CATATG 1 cut(s) 351
NdeII GATC 1 cut(s) 837
NlaIII CATG 4 cut(s) 344, 393, 716, 939
NlaIV GGNNCC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 393
NspV TTCGAA 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 3 cut(s) 81, 461, 686
PflMI CCANNNNNTGG 2 cut(s) 840, 926
PinAI ACCGGT 1 cut(s) 890
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 3 cut(s) 12, 215, 533
PpsI GAGTC 3 cut(s) 12, 215, 533
Psp124BI GAGCTC 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 201, 868
PspGI CCWGG 2 cut(s) 201, 868
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 2 cut(s) 199, 205
PsuI RGATCY 1 cut(s) 837
RseI CAYNNNNRTG 2 cut(s) 717, 813
SacI GAGCTC 1 cut(s) 596
SaqAI TTAA 2 cut(s) 77, 512
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 837
Sau96I GGNCC 2 cut(s) 199, 205
SchI GAGTC 3 cut(s) 13, 215, 534
ScrFI CCNGG 2 cut(s) 203, 870
SduI GDGCHC 2 cut(s) 422, 596
SfaNI GCATC 1 cut(s) 638
SfuI TTCGAA 1 cut(s) 160
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 717, 813
Sse9I AATT 6 cut(s) 331, 382, 451, 631, 778, 863
SsiI CCGC 1 cut(s) 8
SspMI CTAG 4 cut(s) 144, 428, 465, 642
SstI GAGCTC 1 cut(s) 596
StyD4I CCNGG 2 cut(s) 201, 868
TaaI ACNGT 1 cut(s) 910
TaqI TCGA 5 cut(s) 151, 160, 486, 552, 596
TasI AATT 6 cut(s) 331, 382, 451, 631, 778, 863
TfiI GAWTC 3 cut(s) 81, 461, 686
Tru1I TTAA 2 cut(s) 77, 512
Tru9I TTAA 2 cut(s) 77, 512
TscAI CASTG 2 cut(s) 450, 736
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 5 cut(s) 40, 56, 76, 338, 771
TspRI CASTG 2 cut(s) 450, 736
Van91I CCANNNNNTGG 2 cut(s) 840, 926
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 4 cut(s) 382, 451, 778, 863
XbaI TCTAGA 1 cut(s) 464
XceI RCATGY 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 4 cut(s) 144, 428, 465, 642
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.