Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009099

Physical Location & Seq

Genomic Coordinates Reverse (-)

12118770 .. 12119952

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTAGTCCGTTTAACCCGAGAGAGCAAGTAAAGCCCTTAGCCCCATCATCAAGATACAGCGTTCGCAGCCATGACTTGGAAGACGACGTCCCTTCCCTCCACATAACTAAGTTCAGCCAAAGAAATTACTACTGCTGCGGCCTCGCCGCCGCCATGTTCTTGATCCTCGCCGTCATCGCCATCGTCCTCGGCTTCACCGTCTTCCACGTGAAGGGCCCGAGGATCACGATGAACGGCGTCACGACTGCTAACGGAAGTTTACTGACCGGTTCCAATATCACTCTTCTGGCGGATGTCTCGATCAAGAACCCTAACGTGGCGTCGTTCAAGTATGAAAACACGACCACTTTGGTTTACTTCAAGGGGACGCAGGTCGGCGAGGGGAGGAGCCCGGCGGGGGTGGCGAAAGCGAGGAGGACGATGAGGATGAACGTGACGGTGGATATTGTTCAGGCGAAGATCCGGGCCGTGCCGGAGTTTTCCAAAGAGTCTGCGGCAGGGGTGTTAAATTTGACTAGCTTTACGAGAGTTCATGGCAAGGTGAAAGTTGTTATGGTGAAGAGGAATGTTGTGGTTGAGCTGAATTGTACCATGACATACAATTTTAGCCAAGGGATTCAGGGAGATAAATGCAAACAGCGAGTTAGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009664 GO:0009832 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0036211 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0052325 GO:0052546 GO:0052636 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

218

Amino Acids

23.92

Weight (kDa)

10.02

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	100 - 198	9.9e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35610
fragaria_vesca	FvH4_5g25240 FvH4_5g25240 FvH4_5g25240 FvH4_5g25240
malus_domestica	MD06G1008500.v1.1
prunus_persica	Prupe.5G011600_v2.0.a1 Prupe.5G011600_v2.0.a1 Prupe.5G011600_v2.0.a1 Prupe.5G011600_v2.0.a1 Prupe.5G011600_v2.0.a1
pyrus_communis	pycom16g25860
rosa_chinensis	RchiOBHm_Chr7g0215361
rosa_laevigata	RLG00000002667
rosa_multiflora	Rmu_sc0000355.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244240
rosa_rugosa	Rorug07G0152700
rosa_samantha	Rh7AG289300 Rh7BG281300 Rh7CG309100 Rh7DG292900
rosa_wichuraiana	Rw7G024730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	6 cut(s)	141, 150, 153, 293, 398, 497
AclWI	GGATC	3 cut(s)	160, 233, 457
AcsI	RAATTY	1 cut(s)	511
AcvI	CACGTG	1 cut(s)	211
AcyI	GRCGYC	3 cut(s)	90, 240, 323
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	4 cut(s)	79, 214, 319, 400
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	331, 364
AluBI	AGCT	2 cut(s)	522, 583
AluI	AGCT	2 cut(s)	522, 583
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	160, 233, 457
Ama87I	CYCGRG	2 cut(s)	19, 220
AoxI	GGCC	3 cut(s)	142, 217, 468
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	69, 138
ApoI	RAATTY	1 cut(s)	511
AsiGI	ACCGGT	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	217, 218, 468
AsuC2I	CCSGG	2 cut(s)	395, 467
AsuHPI	GGTGA	3 cut(s)	190, 556, 571
AvaI	CYCGRG	2 cut(s)	19, 220
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	221, 395
BbrPI	CACGTG	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	90, 196
BbvI	GCAGC	2 cut(s)	81, 125
BccI	CCATC	2 cut(s)	55, 191
BceAI	ACGGC	3 cut(s)	158, 253, 455
BcnI	CCSGG	2 cut(s)	395, 467
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	6, 519
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	6 cut(s)	70, 139, 142, 150, 153, 498
BlsI	GCNGC	6 cut(s)	71, 140, 143, 151, 154, 499
Bme1390I	CCNGG	2 cut(s)	395, 467
BmeT110I	CYCGRG	2 cut(s)	19, 220
BmgT120I	GGNCC	3 cut(s)	217, 218, 468
BmiI	GGNNCC	3 cut(s)	219, 274, 392
BmrFI	CCNGG	2 cut(s)	395, 467
BoxI	GACNNNNGTC	1 cut(s)	374
BpiI	GAAGAC	2 cut(s)	90, 196
Bpu10I	CCTNAGC	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	395, 467
BsaAI	YACGTR	1 cut(s)	211
BsaHI	GRCGYC	3 cut(s)	90, 240, 323
BsaJI	CCNNGG	3 cut(s)	190, 221, 613
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 214, 319, 400
Bse118I	RCCGGY	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	190, 221, 613
BseGI	GGATG	2 cut(s)	301, 435
BseLI	CCNNNNNNNGG	4 cut(s)	79, 214, 319, 400
BseRI	GAGGAG	2 cut(s)	403, 430
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	81, 125
BshFI	GGCC	3 cut(s)	144, 219, 470
BshTI	ACCGGT	1 cut(s)	269
BsiHKCI	CYCGRG	2 cut(s)	19, 220
BsiSI	CCGG	4 cut(s)	270, 395, 466, 476
BslFI	GGGAC	2 cut(s)	77, 382
BslI	CCNNNNNNNGG	4 cut(s)	79, 214, 319, 400
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	77, 382
BsnI	GGCC	3 cut(s)	144, 219, 470
BsoBI	CYCGRG	2 cut(s)	19, 220
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	221, 395
Bsp143I	GATC	4 cut(s)	165, 225, 303, 462
BspACI	CCGC	6 cut(s)	141, 150, 153, 293, 398, 497
BspANI	GGCC	3 cut(s)	144, 219, 470
BspLI	GGNNCC	3 cut(s)	219, 274, 392
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	3 cut(s)	160, 233, 457
BsrFI	RCCGGY	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	190, 221, 613
BssMI	GATC	4 cut(s)	165, 225, 303, 462
BssNI	GRCGYC	3 cut(s)	90, 240, 323
BssT1I	CCWWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	202, 442
Bst6I	CTCTTC	2 cut(s)	291, 557
BstACI	GRCGYC	3 cut(s)	90, 240, 323
BstBAI	YACGTR	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	40, 111
BstF5I	GGATG	2 cut(s)	301, 435
BstKTI	GATC	4 cut(s)	168, 228, 306, 465
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	4 cut(s)	165, 225, 303, 462
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 69, 179, 404
BstPAI	GACNNNNGTC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	393, 465
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	81, 125
BstV2I	GAAGAC	2 cut(s)	90, 196
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	144, 219, 470
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	301, 435
BveI	ACCTGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	217, 218, 468
CseI	GACGC	3 cut(s)	229, 312, 379
Csp6I	GTAC	1 cut(s)	591
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	4 cut(s)	74, 157, 536, 595
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	2 cut(s)	40, 111
DpnI	GATC	4 cut(s)	167, 227, 305, 464
DpnII	GATC	4 cut(s)	165, 225, 303, 462
Eam1104I	CTCTTC	2 cut(s)	291, 557
EarI	CTCTTC	2 cut(s)	291, 557
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	613
Eco24I	GRGCYC	2 cut(s)	221, 395
Eco72I	CACGTG	1 cut(s)	211
Eco88I	CYCGRG	2 cut(s)	19, 220
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	221, 395
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	4 cut(s)	77, 160, 539, 598
FaiI	YATR	8 cut(s)	75, 107, 158, 336, 537, 557, 596, 601
FaqI	GGGAC	2 cut(s)	77, 382
FatI	CATG	4 cut(s)	73, 156, 535, 594
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	6 cut(s)	70, 139, 142, 150, 153, 498
FokI	GGATG	2 cut(s)	308, 442
FriOI	GRGCYC	2 cut(s)	221, 395
Fsp4HI	GCNGC	6 cut(s)	70, 139, 142, 150, 153, 498
FspBI	CTAG	2 cut(s)	6, 519
GluI	GCNGC	6 cut(s)	70, 139, 142, 150, 153, 498
HaeIII	GGCC	3 cut(s)	144, 219, 470
HapII	CCGG	4 cut(s)	270, 395, 466, 476
HgaI	GACGC	3 cut(s)	229, 312, 379
Hin1I	GRCGYC	3 cut(s)	90, 240, 323
Hin1II	CATG	4 cut(s)	77, 160, 539, 598
HinfI	GANTC	2 cut(s)	491, 619
HpaII	CCGG	4 cut(s)	270, 395, 466, 476
HphI	GGTGA	3 cut(s)	190, 556, 571
Hpy166II	GTNNAC	2 cut(s)	263, 358
Hpy188III	TCNNGA	6 cut(s)	54, 163, 229, 244, 301, 307
Hpy8I	GTNNAC	2 cut(s)	263, 358
Hpy99I	CGWCG	2 cut(s)	92, 328
HpyAV	CCTTC	2 cut(s)	105, 208
HpyCH4III	ACNGT	2 cut(s)	202, 442
HpyCH4IV	ACGT	4 cut(s)	90, 210, 318, 435
HpyCH4V	TGCA	1 cut(s)	636
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 69, 179, 404
HpyF3I	CTNAG	2 cut(s)	40, 111
HpySE526I	ACGT	4 cut(s)	90, 210, 318, 435
Hsp92I	GRCGYC	3 cut(s)	90, 240, 323
Hsp92II	CATG	4 cut(s)	77, 160, 539, 598
Kzo9I	GATC	4 cut(s)	165, 225, 303, 462
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	9 cut(s)	275, 283, 359, 408, 440, 479, 486, 489, 608
Lsp1109I	GCAGC	2 cut(s)	81, 125
MaeI	CTAG	2 cut(s)	6, 519
MaeII	ACGT	4 cut(s)	90, 210, 318, 435
MaeIII	GTNAC	2 cut(s)	241, 436
MalI	GATC	4 cut(s)	167, 227, 305, 464
MboI	GATC	4 cut(s)	165, 225, 303, 462
MboII	GAAGA	5 cut(s)	95, 196, 278, 472, 574
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	221, 395
MluCI	AATT	4 cut(s)	127, 511, 586, 604
MlyI	GAGTC	1 cut(s)	500
MseI	TTAA	2 cut(s)	15, 509
MspI	CCGG	4 cut(s)	270, 395, 466, 476
MspR9I	CCNGG	2 cut(s)	395, 467
MwoI	GCNNNNNNNGC	4 cut(s)	34, 69, 179, 404
NciI	CCSGG	2 cut(s)	395, 467
NdeII	GATC	4 cut(s)	165, 225, 303, 462
NlaIII	CATG	4 cut(s)	77, 160, 539, 598
NlaIV	GGNNCC	3 cut(s)	219, 274, 392
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	241, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	619
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	71, 140, 143, 151, 154, 499
PleI	GAGTC	1 cut(s)	499
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	211
PshAI	GACNNNNGTC	1 cut(s)	374
PspCI	CACGTG	1 cut(s)	211
PspN4I	GGNNCC	3 cut(s)	219, 274, 392
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	217, 218, 468
PsuI	RGATCY	1 cut(s)	462
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	15, 509
SatI	GCNGC	6 cut(s)	70, 139, 142, 150, 153, 498
Sau3AI	GATC	4 cut(s)	165, 225, 303, 462
Sau96I	GGNCC	3 cut(s)	217, 218, 468
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	395, 467
SduI	GDGCHC	2 cut(s)	221, 395
SetI	ASST	8 cut(s)	93, 213, 321, 378, 438, 524, 546, 585
Sse9I	AATT	4 cut(s)	127, 511, 586, 604
SsiI	CCGC	6 cut(s)	141, 150, 153, 293, 398, 497
SspMI	CTAG	2 cut(s)	6, 519
StyD4I	CCNGG	2 cut(s)	393, 465
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	2 cut(s)	202, 442
TaiI	ACGT	4 cut(s)	93, 213, 321, 438
TaqI	TCGA	1 cut(s)	302
TasI	AATT	4 cut(s)	127, 511, 586, 604
TauI	GCSGC	4 cut(s)	144, 152, 155, 500
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	2 cut(s)	15, 509
Tru9I	TTAA	2 cut(s)	15, 509
TseFI	GTSAC	2 cut(s)	241, 436
TseI	GCWGC	2 cut(s)	69, 138
Tsp45I	GTSAC	2 cut(s)	241, 436
TspDTI	ATGAA	4 cut(s)	248, 351, 446, 524
TspGWI	ACGGA	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	511
XspI	CTAG	2 cut(s)	6, 519
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.