Rorug07G0268500

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0021678
Physical Location & Seq
Reverse (-)
25334712 .. 25336090
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0268500.1

Sequence Viewer

Length: 1263 bp
ATGGACTCAGATTTTAGGAGGAGGAGAAACCAAGGAGAAGAGCAATCAGTAACTTGGCTGGAAAGTCTCTCATCTGAAATCATCGTCGACATACTTTCCAGGCTTCCTCTTTCCTCTGCGGTGCAATTCGGGTATGTATGCCGCTCATGGCGTGTACTAGCACGTAGTCACCTTGATGCTTTGCATAGGCAGCATAGCTCTAACATAGTTGCAAGGCTAGGCCTCATCCTGCACTGTGATCATCCCGTTAAAAATGAGCTTTACTTTGTCGATTACCCTTCTAATTACCATGATGGCAAGAATATAGCAGAAAAGAAAATTACCAAACCTTTCTCTCCTTTAATGCCTGAGTTTGATGTGGTAGGCTCATTTGATGGTTTGCTCTGCTTAGCTGATGCAGTGAACAATGTTGCACTATACATATATAATCCATTCACTAGGGATTATATAGAGCTGCCTAGGACCACCCAGTATCCTAATCGACATAGACATGTGGTATTTGGATTTGGGTATAGTCCCTTGACTGAAGTATACAAGGTAGTGAAGATAACCTATTACACTGGTCATGGAGAATACTATGGTTATAGAGATTGCCGGACTTACTACAGTAAATTTCCCCGACTATCCGACGTTCAGATTTTCACAACAGAGAGACCTATCTGGAGAAGTATAGGCAGTGCATCTCACTACTTGGATCCGTCACCAGCACAGACATTGGTCAATGGAAGACTTCATTGGGCCACTTGGACCTCACGCAGACTGCGATCTGGTGGCCAGCTCGTCTCGTTTGACCTATATGATGAGCAATTCAGAGAGGTTCCAACGCCTGAGTTTGGAAGCAGGAGGTGTATTCATCCTCTGGTTGTAGGAGGTTGTCTTGCTGCAGTTGGTTTGTCCATAATTTGGCAATTAGATATATGGGTTATGAAGGAGTATGGTGTGAGAGAATCATGGGTCAGACAAAGGAGCATAGGAAGGCACATTCCGCAGACACTGGAACAAAAGCTTGATGACGAGGTTGGCAACTACCGACCCTGGACGACATCCCGTATAGCAGACAAAGCAAGAGATGTGGTTATTCGGGTTTTGAACGTTACGGAGAGTGGCCATATCTTGTTGGAGTACAAAAGTAGGGCTCTAGTTCTTTATGACCCAACTAATGGAAATTTTATAGTACTGGAATTTGAAGGGATGCCAAGATGGTTTCAAACTTTTGTTCATCAGGGCAGACTCGATCAAGTTGATACCATTTTTAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

420

Amino Acids

48.84

Weight (kDa)

8.6

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 57 4.9e-06 F-box domain
FBA_3 PF08268 85 - 323 5.8e-21 F-box associated beta propeller domain
FBA_1 PF07734 117 - 323 2.1e-12 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 120 - 277 8.5e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021678)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0009986.1_g000011
rosa_rugosa Rorug07G0254200 Rorug07G0254700 Rorug07G0268500
rosa_samantha Rh7BG385500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 903, 1160
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 2 cut(s) 87, 531
AciI CCGC 3 cut(s) 119, 142, 986
AclI AACGTT 1 cut(s) 1092
AclWI GGATC 2 cut(s) 689, 702
AcoI YGGCCR 2 cut(s) 772, 1105
AcsI RAATTY 3 cut(s) 611, 1165, 1181
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 3 cut(s) 156, 1124, 1176
AfiI CCNNNNNNNGG 3 cut(s) 833, 903, 1160
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 3 cut(s) 1090, 1187, 1208
AjnI CCWGG 2 cut(s) 98, 1034
AjuI GAANNNNNNNTTGG 2 cut(s) 718, 750
AluBI AGCT 6 cut(s) 198, 259, 392, 454, 778, 1006
AluI AGCT 6 cut(s) 198, 259, 392, 454, 778, 1006
Alw26I GTCTC 3 cut(s) 71, 646, 787
AlwI GGATC 2 cut(s) 689, 702
AlwNI CAGNNNCTG 1 cut(s) 994
AoxI GGCC 4 cut(s) 220, 738, 772, 1105
ApeKI GCWGC 3 cut(s) 190, 454, 881
ApoI RAATTY 3 cut(s) 611, 1165, 1181
AspA2I CCTAGG 1 cut(s) 458
AspS9I GGNCC 3 cut(s) 462, 738, 747
AsuHPI GGTGA 2 cut(s) 161, 693
AvaII GGWCC 2 cut(s) 462, 747
AvrII CCTAGG 1 cut(s) 458
BalI TGGCCA 2 cut(s) 774, 1107
BamHI GGATCC 1 cut(s) 694
BanII GRGCYC 1 cut(s) 1138
BbsI GAAGAC 1 cut(s) 733
BbvI GCAGC 3 cut(s) 202, 441, 868
BccI CCATC 3 cut(s) 287, 368, 1194
BciT130I CCWGG 2 cut(s) 100, 1036
BciVI GTATCC 1 cut(s) 483
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 71, 646, 787
BfaI CTAG 5 cut(s) 158, 218, 438, 459, 1139
BfmI CTRYAG 2 cut(s) 604, 882
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 4 cut(s) 142, 191, 455, 882
BlnI CCTAGG 1 cut(s) 458
BlpI GCTNAGC 1 cut(s) 388
BlsI GCNGC 4 cut(s) 143, 192, 456, 883
BmcAI AGTACT 1 cut(s) 1176
Bme1390I CCNGG 2 cut(s) 100, 1036
Bme18I GGWCC 2 cut(s) 462, 747
BmgT120I GGNCC 3 cut(s) 462, 738, 747
BmiI GGNNCC 2 cut(s) 696, 819
BmrFI CCNGG 2 cut(s) 100, 1036
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 4 cut(s) 166, 385, 689, 1182
BmuI ACTGGG 1 cut(s) 463
BoxI GACNNNNGTC 1 cut(s) 716
BpiI GAAGAC 1 cut(s) 733
BpmI CTGGAG 1 cut(s) 682
Bpu1102I GCTNAGC 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 3 cut(s) 31, 458, 1034
Bsc4I CCNNNNNNNGG 3 cut(s) 833, 903, 1160
Bse1I ACTGG 4 cut(s) 469, 565, 999, 1182
BseBI CCWGG 2 cut(s) 100, 1036
BseDI CCNNGG 3 cut(s) 31, 458, 1034
BseGI GGATG 5 cut(s) 225, 241, 853, 1043, 1197
BseLI CCNNNNNNNGG 3 cut(s) 833, 903, 1160
BseMII CTCAG 3 cut(s) 21, 339, 819
BseNI ACTGG 4 cut(s) 469, 565, 999, 1182
BseRI GAGGAG 2 cut(s) 34, 37
BseXI GCAGC 3 cut(s) 202, 441, 868
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 4 cut(s) 222, 740, 774, 1107
BsiSI CCGG 1 cut(s) 595
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 3 cut(s) 833, 903, 1160
BsmAI GTCTC 3 cut(s) 71, 646, 787
BsmBI CGTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 501
BsnI GGCC 4 cut(s) 222, 740, 774, 1107
Bso31I GGTCTC 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 1138
Bsp143I GATC 4 cut(s) 238, 694, 764, 1234
Bsp1720I GCTNAGC 1 cut(s) 388
BspACI CCGC 3 cut(s) 119, 142, 986
BspANI GGCC 4 cut(s) 222, 740, 774, 1107
BspCNI CTCAG 3 cut(s) 20, 340, 820
BspLI GGNNCC 2 cut(s) 696, 819
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 2 cut(s) 689, 702
BspQI GCTCTTC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 4 cut(s) 469, 565, 999, 1182
BssECI CCNNGG 3 cut(s) 31, 458, 1034
BssMI GATC 4 cut(s) 238, 694, 764, 1234
BssNAI GTATAC 1 cut(s) 532
BssT1I CCWWGG 2 cut(s) 31, 458
Bst1107I GTATAC 1 cut(s) 532
Bst2UI CCWGG 2 cut(s) 100, 1036
Bst4CI ACNGT 2 cut(s) 236, 608
Bst6I CTCTTC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 4 cut(s) 7, 348, 388, 828
BstF5I GGATG 5 cut(s) 225, 241, 853, 1043, 1197
BstKTI GATC 4 cut(s) 241, 697, 767, 1237
BstMAI GTCTC 3 cut(s) 71, 646, 787
BstMBI GATC 4 cut(s) 238, 694, 764, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 190, 985, 1061
BstNI CCWGG 2 cut(s) 100, 1036
BstNSI RCATGY 1 cut(s) 494
BstPAI GACNNNNGTC 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 98, 1034
BstSFI CTRYAG 2 cut(s) 604, 882
BstV1I GCAGC 3 cut(s) 202, 441, 868
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZ17I GTATAC 1 cut(s) 532
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 4 cut(s) 222, 740, 774, 1107
BtsCI GGATG 5 cut(s) 225, 241, 853, 1043, 1197
BtsI GCAGTG 2 cut(s) 405, 682
BtsIMutI CAGTG 5 cut(s) 232, 405, 558, 682, 992
Cac8I GCNNGC 1 cut(s) 776
CaiI CAGNNNCTG 1 cut(s) 994
Cfr13I GGNCC 3 cut(s) 462, 738, 747
Csp6I GTAC 3 cut(s) 155, 1123, 1175
CspCI CAANNNNNGTGG 2 cut(s) 1053, 1088
CviAII CATG 5 cut(s) 147, 290, 491, 566, 951
CviQI GTAC 3 cut(s) 155, 1123, 1175
DdeI CTNAG 4 cut(s) 7, 348, 388, 828
DpnI GATC 4 cut(s) 240, 696, 766, 1236
DpnII GATC 4 cut(s) 238, 694, 764, 1234
EaeI YGGCCR 2 cut(s) 772, 1105
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 31, 458
Eco147I AGGCCT 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 1138
Eco31I GGTCTC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 462, 747
Eco57I CTGAAG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 98, 1034
EcoT14I CCWWGG 2 cut(s) 31, 458
EcoT38I GRGCYC 1 cut(s) 1138
ErhI CCWWGG 2 cut(s) 31, 458
Esp3I CGTCTC 1 cut(s) 787
FaeI CATG 5 cut(s) 150, 293, 494, 569, 954
FaqI GGGAC 1 cut(s) 501
FatI CATG 5 cut(s) 146, 289, 490, 565, 950
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 2 cut(s) 87, 531
Fnu4HI GCNGC 4 cut(s) 142, 191, 455, 882
FokI GGATG 5 cut(s) 212, 228, 840, 1030, 1204
FriOI GRGCYC 1 cut(s) 1138
Fsp4HI GCNGC 4 cut(s) 142, 191, 455, 882
FspBI CTAG 5 cut(s) 158, 218, 438, 459, 1139
GluI GCNGC 4 cut(s) 142, 191, 455, 882
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 4 cut(s) 222, 740, 774, 1107
HapII CCGG 1 cut(s) 595
Hin1II CATG 5 cut(s) 150, 293, 494, 569, 954
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 3 cut(s) 5, 947, 1230
HpaII CCGG 1 cut(s) 595
HphI GGTGA 2 cut(s) 161, 693
Hpy166II GTNNAC 4 cut(s) 88, 155, 403, 532
Hpy188I TCNGA 6 cut(s) 10, 76, 628, 636, 812, 959
Hpy188III TCNNGA 1 cut(s) 661
Hpy8I GTNNAC 4 cut(s) 88, 155, 403, 532
Hpy99I CGWCG 2 cut(s) 89, 632
HpyAV CCTTC 4 cut(s) 288, 922, 969, 1181
HpyCH4III ACNGT 2 cut(s) 236, 608
HpyCH4IV ACGT 3 cut(s) 163, 630, 1092
HpyCH4V TGCA 8 cut(s) 124, 184, 212, 232, 398, 413, 680, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 985, 1061
HpyF3I CTNAG 4 cut(s) 7, 348, 388, 828
HpySE526I ACGT 3 cut(s) 163, 630, 1092
Hsp92II CATG 5 cut(s) 150, 293, 494, 569, 954
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 238, 694, 764, 1234
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 966
Lsp1109I GCAGC 3 cut(s) 202, 441, 868
LweI GCATC 4 cut(s) 166, 385, 689, 1182
MaeI CTAG 5 cut(s) 158, 218, 438, 459, 1139
MaeII ACGT 3 cut(s) 163, 630, 1092
MaeIII GTNAC 4 cut(s) 49, 167, 699, 1093
MalI GATC 4 cut(s) 240, 696, 766, 1236
MbiI CCGCTC 1 cut(s) 144
MboI GATC 4 cut(s) 238, 694, 764, 1234
MboII GAAGA 3 cut(s) 50, 556, 738
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 1 cut(s) 1138
MlsI TGGCCA 2 cut(s) 774, 1107
MluCI AATT 9 cut(s) 125, 283, 318, 611, 806, 900, 908, 1165, 1181
MluNI TGGCCA 2 cut(s) 774, 1107
MlyI GAGTC 1 cut(s) 1224
MmeI TCCRAC 3 cut(s) 651, 845, 1098
Mox20I TGGCCA 2 cut(s) 774, 1107
MscI TGGCCA 2 cut(s) 774, 1107
MseI TTAA 3 cut(s) 249, 341, 1254
MslI CAYNNNNRTG 2 cut(s) 174, 489
Msp20I TGGCCA 2 cut(s) 774, 1107
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 2 cut(s) 100, 1036
MvaI CCWGG 2 cut(s) 100, 1036
MwoI GCNNNNNNNGC 3 cut(s) 190, 985, 1061
NdeII GATC 4 cut(s) 238, 694, 764, 1234
NlaIII CATG 5 cut(s) 150, 293, 494, 569, 954
NlaIV GGNNCC 2 cut(s) 696, 819
NmuCI GTSAC 2 cut(s) 167, 699
NspI RCATGY 1 cut(s) 494
PceI AGGCCT 1 cut(s) 222
PciI ACATGT 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 760
PfeI GAWTC 1 cut(s) 947
PflMI CCANNNNNTGG 2 cut(s) 903, 1160
PkrI GCNGC 4 cut(s) 143, 192, 456, 883
PleI GAGTC 1 cut(s) 1224
PpsI GAGTC 1 cut(s) 1224
Ppu21I YACGTR 1 cut(s) 164
PscI ACATGT 1 cut(s) 490
PshAI GACNNNNGTC 1 cut(s) 716
Psp1406I AACGTT 1 cut(s) 1092
Psp6I CCWGG 2 cut(s) 98, 1034
PspGI CCWGG 2 cut(s) 98, 1034
PspN4I GGNNCC 2 cut(s) 696, 819
PspPI GGNCC 3 cut(s) 462, 738, 747
PstI CTGCAG 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 994
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 3 cut(s) 156, 1124, 1176
RsaNI GTAC 3 cut(s) 155, 1123, 1175
RseI CAYNNNNRTG 2 cut(s) 174, 489
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 249, 341, 1254
SatI GCNGC 4 cut(s) 142, 191, 455, 882
Sau3AI GATC 4 cut(s) 238, 694, 764, 1234
Sau96I GGNCC 3 cut(s) 462, 738, 747
ScaI AGTACT 1 cut(s) 1176
SchI GAGTC 1 cut(s) 1224
ScrFI CCNGG 2 cut(s) 100, 1036
SduI GDGCHC 1 cut(s) 1138
SfaNI GCATC 4 cut(s) 166, 385, 689, 1182
SfcI CTRYAG 2 cut(s) 604, 882
SinI GGWCC 2 cut(s) 462, 747
SmiMI CAYNNNNRTG 2 cut(s) 174, 489
Sse9I AATT 9 cut(s) 125, 283, 318, 611, 806, 900, 908, 1165, 1181
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 3 cut(s) 119, 142, 986
SspMI CTAG 5 cut(s) 158, 218, 438, 459, 1139
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 98, 1034
StyI CCWWGG 2 cut(s) 31, 458
TaaI ACNGT 2 cut(s) 236, 608
TaiI ACGT 3 cut(s) 166, 633, 1095
TaqI TCGA 4 cut(s) 87, 270, 481, 1233
TasI AATT 9 cut(s) 125, 283, 318, 611, 806, 900, 908, 1165, 1181
TatI WGTACW 3 cut(s) 154, 1122, 1174
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 947
Tru1I TTAA 3 cut(s) 249, 341, 1254
Tru9I TTAA 3 cut(s) 249, 341, 1254
TscAI CASTG 5 cut(s) 239, 405, 565, 682, 999
TseFI GTSAC 2 cut(s) 167, 699
TseI GCWGC 3 cut(s) 190, 454, 881
Tsp45I GTSAC 2 cut(s) 167, 699
TspDTI ATGAA 4 cut(s) 722, 842, 941, 1208
TspGWI ACGGA 2 cut(s) 687, 1112
TspRI CASTG 5 cut(s) 239, 405, 565, 682, 999
Van91I CCANNNNNTGG 2 cut(s) 903, 1160
VpaK11BI GGWCC 2 cut(s) 462, 747
XapI RAATTY 3 cut(s) 611, 1165, 1181
XceI RCATGY 1 cut(s) 494
XmaJI CCTAGG 1 cut(s) 458
XmiI GTMKAC 2 cut(s) 87, 531
XspI CTAG 5 cut(s) 158, 218, 438, 459, 1139
ZrmI AGTACT 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.