Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0021169

Physical Location & Seq

Genomic Coordinates Forward (+)

13329121 .. 13341650

Gene Structure 12530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAATGCAATCAAGTTCCAAAGTGGTTCAAGTATCGTGAGCATCCAAATTACATATATATACCTTCAACTTCAGAGGAAGATGAAGAGAAGCTTGATATATGTGAAGTTTCTATTGGAGTAACTCCAAATTCAGTGAAGCTTGGATTGGCTCTCTCTGCTGTTTTTGAAGTTACCCAAAACAATGGTGGTCGTTTTCCAGACTTTGCTATAGGTGTCGATATTATGCATAATGAGAGATTCGTGGGTTATAGGACATGCATTGACATGACTAATTTAGAGACACAGTCAACCCATGTGTCCCTGAATTATTTCAATGTGTCCTTAAATGGAGCCGAAAGCAATGGTACGTGTCAATTGATATTTTGGCACGGTAATAATGATGCCAGACTGTCGTTGAAAAGCTGCGGAGTTCACATTGTCGATAACGGTGGCGCTATTACTCTTGATAATAATGATTTAGATGAAGAAAAGGAAGAGCAAGAGCAAGCATCGCTAGCAAAGAGACCTCGCGGCGTAGCAGGGGAGGATAATCAAGATCAGCAGCACTGGTGTTGTACTTCCTTGACTTCATCAGAATCAACTGCAAATAAGCGGAACCGTGTCAAGGAGGAGCAAACTCATCACTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

5.06

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021169)

Species	Orthologous Gene IDs
malus_domestica	MD02G1113200.v1.1
rosa_laevigata	RLG00000029814
rosa_roxburghii	Rroxscaffold_4G00319990 Rroxscaffold_4G00320110
rosa_samantha	Rh1BG084700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	513
AciI	CCGC	3 cut(s)	408, 513, 595
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	349, 559
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	31, 69, 170, 316, 400
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 131, 163
AluBI	AGCT	3 cut(s)	94, 142, 405
AluI	AGCT	3 cut(s)	94, 142, 405
Alw26I	GTCTC	2 cut(s)	275, 499
ApeKI	GCWGC	2 cut(s)	405, 544
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	392, 556
BcoDI	GTCTC	2 cut(s)	275, 499
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	438
BisI	GCNGC	3 cut(s)	406, 514, 545
BlsI	GCNGC	3 cut(s)	407, 515, 546
BmiI	GGNNCC	2 cut(s)	334, 599
BmsI	GCATC	3 cut(s)	52, 373, 500
BmtI	GCTAGC	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	392, 556
Bsh1236I	CGCG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	275, 499
BsmFI	GGGAC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	538
BspACI	CCGC	3 cut(s)	408, 513, 595
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	2 cut(s)	334, 599
BspOI	GCTAGC	1 cut(s)	500
BspQI	GCTCTTC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	554
BssMI	GATC	1 cut(s)	538
Bst4CI	ACNGT	5 cut(s)	288, 374, 393, 431, 602
Bst6I	CTCTTC	2 cut(s)	81, 471
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	489, 498
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	1 cut(s)	541
BstMAI	GTCTC	2 cut(s)	275, 499
BstMBI	GATC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 493, 497
BstNSI	RCATGY	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	392, 556
BstXI	CCANNNNNNTGG	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	141, 547
Cac8I	GCNNGC	2 cut(s)	489, 498
CfoI	GCGC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	348, 558
CviAII	CATG	3 cut(s)	258, 268, 296
CviJI	RGCY	5 cut(s)	94, 142, 152, 335, 405
CviKI_1	RGCY	5 cut(s)	94, 142, 152, 335, 405
CviQI	GTAC	2 cut(s)	348, 558
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	81, 471
EarI	CTCTTC	2 cut(s)	81, 471
Eco31I	GGTCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	57
EcoT22I	ATGCAT	2 cut(s)	231, 263
FaeI	CATG	3 cut(s)	261, 271, 299
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	3 cut(s)	257, 267, 295
Fnu4HI	GCNGC	3 cut(s)	406, 514, 545
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	406, 514, 545
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	3 cut(s)	406, 514, 545
HaeII	RGCGCY	1 cut(s)	438
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	261, 271, 299
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	2 cut(s)	92, 140
HinfI	GANTC	2 cut(s)	240, 578
Hpy166II	GTNNAC	2 cut(s)	291, 415
Hpy188I	TCNGA	2 cut(s)	76, 577
Hpy188III	TCNNGA	4 cut(s)	38, 200, 446, 536
Hpy8I	GTNNAC	2 cut(s)	291, 415
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	5 cut(s)	288, 374, 393, 431, 602
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	9, 229, 261, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 493, 497
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	261, 271, 299
HspAI	GCGC	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	538
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	332, 613
LpnPI	CCDG	5 cut(s)	213, 317, 400, 507, 535
Lsp1109I	GCAGC	2 cut(s)	392, 556
LweI	GCATC	3 cut(s)	52, 373, 500
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	121, 172
MalI	GATC	1 cut(s)	540
MboI	GATC	1 cut(s)	538
MboII	GAAGA	4 cut(s)	92, 98, 479, 488
MfeI	CAATTG	1 cut(s)	356
MluCI	AATT	5 cut(s)	49, 130, 274, 307, 356
MnlI	CCTC	4 cut(s)	70, 519, 520, 604
Mph1103I	ATGCAT	2 cut(s)	231, 263
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	158, 493, 497
NdeII	GATC	1 cut(s)	538
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	3 cut(s)	261, 271, 299
NlaIV	GGNNCC	2 cut(s)	334, 599
NsiI	ATGCAT	2 cut(s)	231, 263
NspI	RCATGY	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	240, 578
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	407, 515, 546
Ppu21I	YACGTR	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	334, 599
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	2 cut(s)	349, 559
RsaNI	GTAC	2 cut(s)	348, 558
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	3 cut(s)	406, 514, 545
Sau3AI	GATC	1 cut(s)	538
SetI	ASST	7 cut(s)	67, 96, 144, 217, 353, 407, 511
SfaNI	GCATC	3 cut(s)	52, 373, 500
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	5 cut(s)	49, 130, 274, 307, 356
SsiI	CCGC	3 cut(s)	408, 513, 595
SspMI	CTAG	1 cut(s)	497
TaaI	ACNGT	5 cut(s)	288, 374, 393, 431, 602
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	219, 423
TasI	AATT	5 cut(s)	49, 130, 274, 307, 356
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	240, 578
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	141, 554
TseI	GCWGC	2 cut(s)	405, 544
TspDTI	ATGAA	5 cut(s)	17, 99, 480, 561, 619
TspRI	CASTG	2 cut(s)	141, 554
Tth111I	GACNNNGTC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	2 cut(s)	231, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.