Rh1CG242200

Protein of unknown function (DUF3741)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004678
Physical Location & Seq
Reverse (-)
50192147 .. 50198551
6405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG242200.1

Sequence Viewer

Length: 2064 bp
ATGGCAAAGAAGTCCCAGAGACGCTCTGTGCGGTATGAGAAAGACCAGTTAGGCTGTATGTGGGGTTTGATTAACATCTTTGATTTTCGGCACGGCCGCCCCACCTGGAAGCTGATCTCTGATAGGAGGCATGGAAGCAAGCAAGCTCTTGGTACTGGGTCTCCAAGGAACAGGTTCGGGGTGTTGAGTGGTTTGGATGAGAACTTTCAAGGCACCCTTGAAAGCGATGTGGACGCAACAGTAACGGTGGCAGGCAATGATTGTAAGCCTAGTGTGAAGAAACTTATGGAAGAAGAAATGTCCAGTGAGCAGGACATGAGGAAAGAGATCAGCACTGATGTGGTGAGTAACCAGACTGATGCAAGCCATACCAGAAAGGATCAAAAAAGAACAAAGAAGACTCGTAAGAAAAGCCGGGACATGGACACCTCTGATTTGAATGGTTCTGAGACTTTGGAGCCTGGATGCTCATGTAATCAGAAACAAGAGCATAAATCTAGAAGTAACCGTGGCATAGATGAGATAATGGAAGAGGTATGCTGCCAGATCCATCAAAAGTATATAAATAGTGTGAATCATGATCTGAATGGTGAGACTCCTGTCAGATCAAACTACAAGCATTCTGATTTTGAAGAGAAATTATGTCTGACAATCAAGGAGTTCATGAATCAGAAGTTTACTGATGGGAAGCATCTCACAGAAGATCAGAAAATCCAGCACTTTAGAGAACTAATGGATGCACTTGAGACTTTAAGTTCAGATGAGGAATTGTTTCTGAAACTCTTACAAGATCCAAACTCGCTGCTGGCAAAGTATGTCTTGAACTTGCAGGATTCTCAAATAGAGAAAGATAAAGAATCCAAGGCTGTTGCAGAGTCCAACTCGACAGAGAAACTTGAGGATTCAAAACAACCTGAGGAGCTTGTCATCCGTAAACAGCGAAAATTTTTCAGGAGAAAGAGCAAGCCTCAAGAAAGAGACCCAGCTGAGGCCAATGAGAATTTTGAAGCTTCAAAGAGAATTGTCATTTTGAAGCCTGGGCCTACAGTTTTACGGGATTCTGAAACTGAAAGTAACAAGATCCCAGAGTCCCATTATATAGTAAGAAGTAAAGGGCCAAATGAAAAAATTGGCTCTCACTTTTTTCTTTCTGAAATAAAGAGGAAACTGAAGAATGCTATGGGAAAGCAACAGCATGGGGTATCTGCTATTGGAAATTCAAACATATTGCCCTATGGGCATCAAAGTGTGGAAGATGGTGACAGAGGAATTGTTAAGGAAAAGTTTGGAAGTTCTCCTAGTAAAGATCACTTCTACATGGAAAGAATTGCTAAACCTTCTGGTGCTATCAAGAGAGCAGACAAGAGTGGCAAATTGAAAGAATCTGAAATGAATATGAAACATGAAGATCCAGGTATTCCTAATCAAAGGGTATCTAACATCTACATTGAAGCCAAGAAACATCTCTCTGAGATGCTGAGCAATGGAGATGCAAGTGTAGATTTTGTGGGACAACATTTTCCCAAAACCTTGGGAAGGATTCTCTCTCTTCCTGAGTATAATGTGTCTCCTAGGGGCAGTCCCGGAAGGGACTCGGAGCTTGGGTTTGTTACTGCACAAATAAGATTATCTCCTCGCGACAGAGTTTGGAAGGCCAATGAGAATGCAGGTTCTCCTAAGCAAGATAAAAATGTCAGTCCTCTAGGTCAAGTAGCACAAAACTTAGAGAACAGGCTATCTGTTTCTGACAACAACACTGACTGTGAAGTACAGCCTCCTAATTCCCTACCAAGCACCTCAGTTGATTTGAAGGACAACTGTTCTCCTAGTGAACCAGAAGAAACCCATGTCACGATTAAAGACAAGATGAATCCTGAAGGTGATATGGAGATTGCAAAAGAGATTGAAATTGTAGCTGAGGAAGAAGAGAGTGTACTGGATGCTCCTTCTGAACCGAGTTGCTCTTCCATTGCCAGGGATGACCAAAGTGGCGATGAGATTGAAATTGTGGATGATAAAAGATATTCAGAATGCTGGCAACGGGTAATTATAAAAGTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378

Protein Analysis

687

Amino Acids

77.72

Weight (kDa)

6.07

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3741 PF12552 223 - 267 4.8e-19 Protein of unknown function (DUF3741)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2051
Acc36I ACCTGC 1 cut(s) 1658
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 1638
AciI CCGC 2 cut(s) 31, 97
AclWI GGATC 5 cut(s) 387, 541, 785, 1075, 1403
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 3 cut(s) 944, 1000, 1216
AcuI CTGAAG 2 cut(s) 1190, 1896
AfaI GTAC 3 cut(s) 154, 1770, 1935
AfiI CCNNNNNNNGG 4 cut(s) 421, 988, 1536, 1974
AjnI CCWGG 5 cut(s) 104, 460, 1036, 1411, 1973
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 7 cut(s) 112, 146, 922, 986, 1010, 1600, 1916
AluI AGCT 7 cut(s) 112, 146, 922, 986, 1010, 1600, 1916
Alw26I GTCTC 7 cut(s) 13, 165, 443, 587, 740, 972, 1572
AlwI GGATC 5 cut(s) 387, 541, 785, 1075, 1403
AoxI GGCC 5 cut(s) 94, 990, 1040, 1115, 1653
ApeKI GCWGC 2 cut(s) 540, 802
ApoI RAATTY 3 cut(s) 944, 1000, 1216
Asp700I GAANNNNTTC 2 cut(s) 173, 771
AspA2I CCTAGG 1 cut(s) 1571
AspS9I GGNCC 2 cut(s) 1040, 1115
AsuC2I CCSGG 2 cut(s) 416, 1584
AsuHPI GGTGA 4 cut(s) 355, 602, 1271, 1892
AvrII CCTAGG 1 cut(s) 1571
AxyI CCTNAGG 1 cut(s) 915
BanI GGYRCC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 1917, 1949
BbsI GAAGAC 1 cut(s) 404
BbvCI CCTCAGC 2 cut(s) 987, 1917
BbvI GCAGC 2 cut(s) 527, 789
BccI CCATC 3 cut(s) 558, 677, 1250
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 5 cut(s) 106, 462, 1038, 1413, 1975
BcnI CCSGG 2 cut(s) 416, 1584
BcoDI GTCTC 7 cut(s) 13, 165, 443, 587, 740, 972, 1572
BfaI CTAG 6 cut(s) 270, 498, 1299, 1572, 1703, 1827
BfmI CTRYAG 1 cut(s) 1044
BfuAI ACCTGC 1 cut(s) 1658
BglI GCCNNNNNGGC 1 cut(s) 1237
BisI GCNGC 3 cut(s) 97, 541, 803
BlnI CCTAGG 1 cut(s) 1571
BlpI GCTNAGC 1 cut(s) 1478
BlsI GCNGC 3 cut(s) 98, 542, 804
Bme1390I CCNGG 7 cut(s) 106, 416, 462, 1038, 1413, 1584, 1975
BmgT120I GGNCC 2 cut(s) 1040, 1115
BmiI GGNNCC 2 cut(s) 214, 459
BmrFI CCNGG 7 cut(s) 106, 416, 462, 1038, 1413, 1584, 1975
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 8 cut(s) 349, 455, 700, 727, 1249, 1464, 1480, 1930
BmuI ACTGGG 1 cut(s) 165
BoxI GACNNNNGTC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 404
BplI GAGNNNNNCTC 4 cut(s) 866, 898, 952, 984
Bpu10I CCTNAGC 3 cut(s) 987, 1677, 1917
Bpu1102I GCTNAGC 1 cut(s) 1478
BpuEI CTTGAG 3 cut(s) 764, 917, 954
BpuMI CCSGG 2 cut(s) 416, 1584
BsaBI GATNNNNATC 1 cut(s) 74
BsaI GGTCTC 2 cut(s) 165, 972
BsaJI CCNNGG 7 cut(s) 164, 508, 861, 1037, 1530, 1571, 1974
BsaXI ACNNNNNCTCC 4 cut(s) 145, 175, 1589, 1619
Bsc4I CCNNNNNNNGG 4 cut(s) 421, 988, 1536, 1974
Bse1I ACTGG 4 cut(s) 46, 160, 303, 1941
Bse21I CCTNAGG 1 cut(s) 915
Bse3DI GCAATG 3 cut(s) 262, 1489, 1968
Bse8I GATNNNNATC 1 cut(s) 74
BseBI CCWGG 5 cut(s) 106, 462, 1038, 1413, 1975
BseDI CCNNGG 7 cut(s) 164, 508, 861, 1037, 1530, 1571, 1974
BseGI GGATG 7 cut(s) 202, 470, 742, 927, 1945, 1984, 2017
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 4 cut(s) 421, 988, 1536, 1974
BseMI GCAATG 3 cut(s) 262, 1489, 1968
BseMII CTCAG 8 cut(s) 438, 906, 978, 1461, 1469, 1545, 1812, 1908
BseNI ACTGG 4 cut(s) 46, 160, 303, 1941
BseRI GAGGAG 2 cut(s) 932, 1623
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 527, 789
BseYI CCCAGC 1 cut(s) 982
BsgI GTGCAG 1 cut(s) 1599
Bsh1236I CGCG 1 cut(s) 1638
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 5 cut(s) 96, 992, 1042, 1117, 1655
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 415, 1584
BslFI GGGAC 5 cut(s) 431, 1075, 1524, 1566, 1604
BslI CCNNNNNNNGG 4 cut(s) 421, 988, 1536, 1974
BsmAI GTCTC 7 cut(s) 13, 165, 443, 587, 740, 972, 1572
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 5 cut(s) 431, 1075, 1524, 1566, 1604
BsmI GAATGC 4 cut(s) 619, 1180, 1669, 2036
BsnI GGCC 5 cut(s) 96, 992, 1042, 1117, 1655
Bso31I GGTCTC 2 cut(s) 165, 972
Bsp1720I GCTNAGC 1 cut(s) 1478
Bsp68I TCGCGA 1 cut(s) 1638
BspACI CCGC 2 cut(s) 31, 97
BspANI GGCC 5 cut(s) 96, 992, 1042, 1117, 1655
BspCNI CTCAG 8 cut(s) 439, 907, 979, 1462, 1470, 1546, 1811, 1909
BspFNI CGCG 1 cut(s) 1638
BspHI TCATGA 2 cut(s) 577, 663
BspLI GGNNCC 2 cut(s) 214, 459
BspMI ACCTGC 1 cut(s) 1658
BspPI GGATC 5 cut(s) 387, 541, 785, 1075, 1403
BspQI GCTCTTC 1 cut(s) 1969
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 2 cut(s) 165, 972
BsrDI GCAATG 3 cut(s) 262, 1489, 1968
BsrI ACTGG 4 cut(s) 46, 160, 303, 1941
BssECI CCNNGG 7 cut(s) 164, 508, 861, 1037, 1530, 1571, 1974
BssT1I CCWWGG 4 cut(s) 164, 861, 1530, 1571
Bst2UI CCWGG 5 cut(s) 106, 462, 1038, 1413, 1975
Bst4CI ACNGT 6 cut(s) 241, 247, 509, 1048, 1763, 1820
Bst6I CTCTTC 5 cut(s) 525, 627, 1554, 1920, 1969
BstC8I GCNNGC 7 cut(s) 140, 144, 253, 364, 807, 965, 2036
BstDSI CCRYGG 1 cut(s) 508
BstENI CCTNNNNNAGG 1 cut(s) 1534
BstF5I GGATG 7 cut(s) 202, 470, 742, 927, 1945, 1984, 2017
BstFNI CGCG 1 cut(s) 1638
BstMAI GTCTC 7 cut(s) 13, 165, 443, 587, 740, 972, 1572
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 1237
BstNI CCWGG 5 cut(s) 106, 462, 1038, 1413, 1975
BstPAI GACNNNNGTC 1 cut(s) 599
BstSCI CCNGG 7 cut(s) 104, 414, 460, 1036, 1411, 1582, 1973
BstSFI CTRYAG 1 cut(s) 1044
BstUI CGCG 1 cut(s) 1638
BstV1I GCAGC 2 cut(s) 527, 789
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 4 cut(s) 546, 790, 1080, 1408
BstXI CCANNNNNNTGG 1 cut(s) 1531
BstYI RGATCY 4 cut(s) 546, 790, 1080, 1408
BstZI CGGCCG 1 cut(s) 94
Bsu36I CCTNAGG 1 cut(s) 915
BsuRI GGCC 5 cut(s) 96, 992, 1042, 1117, 1655
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 2 cut(s) 240, 2007
BtsCI GGATG 7 cut(s) 202, 470, 742, 927, 1945, 1984, 2017
BtsIMutI CAGTG 3 cut(s) 310, 333, 1755
BtuMI TCGCGA 1 cut(s) 1638
BveI ACCTGC 1 cut(s) 1658
Cac8I GCNNGC 7 cut(s) 140, 144, 253, 364, 807, 965, 2036
CciI TCATGA 2 cut(s) 577, 663
Cfr13I GGNCC 2 cut(s) 1040, 1115
CseI GACGC 2 cut(s) 30, 242
Csp6I GTAC 3 cut(s) 153, 1769, 1934
CviQI GTAC 3 cut(s) 153, 1769, 1934
EaeI YGGCCR 1 cut(s) 94
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 5 cut(s) 525, 627, 1554, 1920, 1969
EarI CTCTTC 5 cut(s) 525, 627, 1554, 1920, 1969
EclXI CGGCCG 1 cut(s) 94
Eco130I CCWWGG 4 cut(s) 164, 861, 1530, 1571
Eco31I GGTCTC 2 cut(s) 165, 972
Eco52I CGGCCG 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 1190, 1896
Eco81I CCTNAGG 1 cut(s) 915
EcoNI CCTNNNNNAGG 1 cut(s) 1534
EcoRII CCWGG 5 cut(s) 104, 460, 1036, 1411, 1973
EcoT14I CCWWGG 4 cut(s) 164, 861, 1530, 1571
ErhI CCWWGG 4 cut(s) 164, 861, 1530, 1571
Esp3I CGTCTC 1 cut(s) 13
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 803, 835
FaqI GGGAC 5 cut(s) 431, 1075, 1524, 1566, 1604
Fnu4HI GCNGC 3 cut(s) 97, 541, 803
FokI GGATG 7 cut(s) 209, 477, 749, 914, 1952, 1991, 2024
Fsp4HI GCNGC 3 cut(s) 97, 541, 803
FspBI CTAG 6 cut(s) 270, 498, 1299, 1572, 1703, 1827
GluI GCNGC 3 cut(s) 97, 541, 803
GsaI CCCAGC 1 cut(s) 986
HaeIII GGCC 5 cut(s) 96, 992, 1042, 1117, 1655
HapII CCGG 2 cut(s) 415, 1584
HgaI GACGC 2 cut(s) 30, 242
HindIII AAGCTT 1 cut(s) 1008
HpaII CCGG 2 cut(s) 415, 1584
HphI GGTGA 4 cut(s) 355, 602, 1271, 1892
Hpy166II GTNNAC 5 cut(s) 232, 678, 935, 1832, 1934
Hpy8I GTNNAC 5 cut(s) 232, 678, 935, 1832, 1934
HpyAV CCTTC 7 cut(s) 1347, 1530, 1581, 1645, 1804, 1871, 1956
HpyCH4III ACNGT 6 cut(s) 241, 247, 509, 1048, 1763, 1820
HpyCH4V TGCA 8 cut(s) 362, 740, 829, 872, 1493, 1616, 1667, 1895
HpyF10VI GCNNNNNNNGC 1 cut(s) 1237
LguI GCTCTTC 1 cut(s) 1969
LmnI GCTCC 4 cut(s) 457, 919, 1597, 1948
Lsp1109I GCAGC 2 cut(s) 527, 789
LweI GCATC 8 cut(s) 349, 455, 700, 727, 1249, 1464, 1480, 1930
MaeI CTAG 6 cut(s) 270, 498, 1299, 1572, 1703, 1827
MaeIII GTNAC 7 cut(s) 241, 347, 503, 1073, 1259, 1609, 1849
MflI RGATCY 4 cut(s) 546, 790, 1080, 1408
MlyI GAGTC 5 cut(s) 394, 589, 884, 1097, 1586
MmeI TCCRAC 1 cut(s) 903
MroXI GAANNNNTTC 2 cut(s) 173, 771
MseI TTAA 5 cut(s) 72, 752, 1275, 1857, 2062
MslI CAYNNNNRTG 2 cut(s) 338, 1245
MspA1I CMGCKG 1 cut(s) 986
MspI CCGG 2 cut(s) 415, 1584
MspR9I CCNGG 7 cut(s) 106, 416, 462, 1038, 1413, 1584, 1975
Mva1269I GAATGC 4 cut(s) 619, 1180, 1669, 2036
MvaI CCWGG 5 cut(s) 106, 462, 1038, 1413, 1975
MvnI CGCG 1 cut(s) 1638
MwoI GCNNNNNNNGC 1 cut(s) 1237
NciI CCSGG 2 cut(s) 416, 1584
NlaIV GGNNCC 2 cut(s) 214, 459
NmuCI GTSAC 2 cut(s) 1259, 1849
NruI TCGCGA 1 cut(s) 1638
OliI CACNNNNGTG 1 cut(s) 338
PagI TCATGA 2 cut(s) 577, 663
PciSI GCTCTTC 1 cut(s) 1969
PctI GAATGC 4 cut(s) 619, 1180, 1669, 2036
PdmI GAANNNNTTC 2 cut(s) 173, 771
PfeI GAWTC 9 cut(s) 574, 667, 833, 857, 902, 1058, 1382, 1540, 1870
PfoI TCCNGGA 1 cut(s) 1582
PkrI GCNGC 3 cut(s) 98, 542, 804
PleI GAGTC 5 cut(s) 394, 589, 883, 1096, 1586
PpsI GAGTC 5 cut(s) 394, 589, 883, 1096, 1586
PshAI GACNNNNGTC 1 cut(s) 599
PsiI TTATAA 1 cut(s) 2051
Psp6I CCWGG 5 cut(s) 104, 460, 1036, 1411, 1973
PspFI CCCAGC 1 cut(s) 982
PspGI CCWGG 5 cut(s) 104, 460, 1036, 1411, 1973
PspN4I GGNNCC 2 cut(s) 214, 459
PspPI GGNCC 2 cut(s) 1040, 1115
PsuI RGATCY 4 cut(s) 546, 790, 1080, 1408
PvuII CAGCTG 1 cut(s) 986
RruI TCGCGA 1 cut(s) 1638
RsaI GTAC 3 cut(s) 154, 1770, 1935
RsaNI GTAC 3 cut(s) 153, 1769, 1934
RseI CAYNNNNRTG 2 cut(s) 338, 1245
SapI GCTCTTC 1 cut(s) 1969
SaqAI TTAA 5 cut(s) 72, 752, 1275, 1857, 2062
SatI GCNGC 3 cut(s) 97, 541, 803
Sau96I GGNCC 2 cut(s) 1040, 1115
SchI GAGTC 5 cut(s) 394, 589, 884, 1097, 1586
ScrFI CCNGG 7 cut(s) 106, 416, 462, 1038, 1413, 1584, 1975
SfaNI GCATC 8 cut(s) 349, 455, 700, 727, 1249, 1464, 1480, 1930
SfcI CTRYAG 1 cut(s) 1044
SmiMI CAYNNNNRTG 2 cut(s) 338, 1245
SmlI CTYRAG 3 cut(s) 743, 896, 969
SmoI CTYRAG 3 cut(s) 743, 896, 969
SsiI CCGC 2 cut(s) 31, 97
SspMI CTAG 6 cut(s) 270, 498, 1299, 1572, 1703, 1827
StyD4I CCNGG 7 cut(s) 104, 414, 460, 1036, 1411, 1582, 1973
StyI CCWWGG 4 cut(s) 164, 861, 1530, 1571
TaaI ACNGT 6 cut(s) 241, 247, 509, 1048, 1763, 1820
TaqI TCGA 1 cut(s) 884
TatI WGTACW 2 cut(s) 1768, 1933
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 9 cut(s) 574, 667, 833, 857, 902, 1058, 1382, 1540, 1870
Tru1I TTAA 5 cut(s) 72, 752, 1275, 1857, 2062
Tru9I TTAA 5 cut(s) 72, 752, 1275, 1857, 2062
TscAI CASTG 3 cut(s) 310, 340, 1762
TseFI GTSAC 2 cut(s) 1259, 1849
TseI GCWGC 2 cut(s) 540, 802
Tsp45I GTSAC 2 cut(s) 1259, 1849
TspDTI ATGAA 7 cut(s) 652, 680, 1137, 1406, 1412, 1419, 1883
TspGWI ACGGA 1 cut(s) 920
TspRI CASTG 3 cut(s) 310, 340, 1762
XagI CCTNNNNNAGG 1 cut(s) 1534
XapI RAATTY 3 cut(s) 944, 1000, 1216
XbaI TCTAGA 1 cut(s) 497
XmaJI CCTAGG 1 cut(s) 1571
XmnI GAANNNNTTC 2 cut(s) 173, 771
XspI CTAG 6 cut(s) 270, 498, 1299, 1572, 1703, 1827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.