Rh2AG342000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018912
Physical Location & Seq
Forward (+)
50028074 .. 50028490
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG342000.1

Sequence Viewer

Length: 417 bp
ATGAATAGAGAGCCAAACCGACTTAAGACTCTGAAAATGAACCCAACTTCGTACTTGGAGTCTAAACCCGACTTATCATCATTAGCAGGACCCTCCACCGTACCCTCAGGCGACAGATTTGCTAACGTCGGACTTGGTGGTCTATTGCTCGACTGGAACATCGCCAGCGACATTGACGGAGTTTCAGACAAAGGAATGCTCAAGGAAGATGGGGTTGCCGAAATCTCGGGAGTCACTGCAACTGGCAGAGCCCCAGATGGGCTTGAATTCAGAGCGGCGAGGTCTAAGCAAAGTGGTTCTGGCTTGCTATTCAACCCAAGCAACTATGCCAGGATGGGAGACACCGCCGCCAACTGCTTCAGAGTCATCGTCTTCGAATTCAAACAGGAAATGGAAAAAGAGAGAGTACCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.88

Weight (kDa)

5.51

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018912)

Species Orthologous Gene IDs
prunus_persica Prupe.2G113300_v2.0.a1 Prupe.8G053200_v2.0.a1 Prupe.8G053200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0064821
rosa_laevigata RLG00000013472
rosa_rugosa Rorug05G0339300 Rorug05G0366500
rosa_samantha Rh2AG342000 Rh2AG342100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 275
AciI CCGC 3 cut(s) 275, 345, 348
AcsI RAATTY 2 cut(s) 266, 377
AcuI CTGAAG 1 cut(s) 343
AfaI GTAC 3 cut(s) 53, 102, 408
AfiI CCNNNNNNNGG 1 cut(s) 258
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 3 cut(s) 266, 313, 382
AjnI CCWGG 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 226
ApoI RAATTY 2 cut(s) 266, 377
AspS9I GGNCC 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 375
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 106
BanII GRGCYC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 364
BccI CCATC 3 cut(s) 203, 251, 328
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 276, 348
BlsI GCNGC 2 cut(s) 277, 349
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 364
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 158, 247
Bse21I CCTNAGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 158, 247
BsiHKCI CYCGRG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 253
BspACI CCGC 3 cut(s) 275, 345, 348
BspCNI CTCAG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 275
BsrI ACTGG 2 cut(s) 158, 247
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 166, 305
BstDEI CTNAG 2 cut(s) 106, 285
BstF5I GGATG 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 333
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 364
Bsu36I CCTNAGG 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 339
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 166, 305
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 52, 101, 407
CviJI RGCY 4 cut(s) 13, 251, 262, 303
CviKI_1 RGCY 4 cut(s) 13, 251, 262, 303
CviQI GTAC 3 cut(s) 52, 101, 407
DdeI CTNAG 2 cut(s) 106, 285
DrdI GACNNNNNNGTC 1 cut(s) 138
DseDI GACNNNNNNGTC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 343
Eco81I CCTNAGG 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 89
EcoRI GAATTC 2 cut(s) 266, 377
EcoRII CCWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 253
FaiI YATR 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 276, 348
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 2 cut(s) 276, 348
GluI GCNGC 2 cut(s) 276, 348
HinfI GANTC 4 cut(s) 28, 59, 231, 363
Hpy188I TCNGA 5 cut(s) 33, 131, 187, 272, 362
Hpy188III TCNNGA 1 cut(s) 228
Hpy99I CGWCG 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 106, 285
HpySE526I ACGT 1 cut(s) 126
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 232
MbiI CCGCTC 1 cut(s) 275
MboII GAAGA 2 cut(s) 218, 364
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 266, 377
MlyI GAGTC 4 cut(s) 22, 68, 240, 372
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 103, 115, 273
MseI TTAA 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 375
PctI GAATGC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 277, 349
PleI GAGTC 4 cut(s) 22, 67, 239, 371
PpsI GAGTC 4 cut(s) 22, 67, 239, 371
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
RsaI GTAC 3 cut(s) 53, 102, 408
RsaNI GTAC 3 cut(s) 52, 101, 407
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 276, 348
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 4 cut(s) 22, 68, 240, 372
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 253
SetI ASST 3 cut(s) 129, 284, 412
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 23, 200
SmoI CTYRAG 2 cut(s) 23, 200
Sse9I AATT 2 cut(s) 266, 377
SsiI CCGC 3 cut(s) 275, 345, 348
StyD4I CCNGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 150, 375
TasI AATT 2 cut(s) 266, 377
TauI GCSGC 2 cut(s) 278, 350
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 17, 53
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 241
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 2 cut(s) 266, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.