Rh2BG309600

phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017969
Physical Location & Seq
Reverse (-)
36156477 .. 36158827
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG309600.1

Sequence Viewer

Length: 849 bp
ATGGGCAGCATAGCCACAAGATGGAGGCAACTGAGCGGCGAGAAGGATTGGGAGGGTCTATTGTACCCTCTGGACATTGATCTCCGCCGCTACATAATCCACTATGGTGAAAGGGCCGGAGCTAGTAGAGACGCTGTCATTGCTGAGCCAAAATCAAAGAACTTTGGACAACCCAGATATGCAAAGCGACATTTATTCTCTAAGGTGGGTTTGGAGATCGGGAATCCATACAAATATGTGGTGAGAAAGTATTTATATGCAGCCCCAAAACTACCGTCGTCCCCGGGAATGTCTTGTTTGTTGGGTTACGTTGCGGTGACAACAGATGAAGGAAGCAAAGTGTTGGGGAGGAGGGACGTTCTCATTTCGTTTAGAGGAGCAGTGCTGGGACATGAGAAGCTTGGTCATCCTACAGTGCACCTTCCTTGGCATACTTATTACACTAATGTTGACCTTCAATCCCCACACAACAAAACTAGCTGCAGAGATCAGGCTCAAGCTGCAGTAAGAGAACTATTGGGTCAATACAAGGACGAGGAAATCAGCGTTACTGCCACTGGCCATAGCATGGGTGCTGCATTCGCAGCTCAAACTGCAATAGACCTCGTTCACAATGGATTCAATATCATAAAACCTACAGGAATACCAGTGAAAGCGTGTCTTGTCACAGCCATCCTGTTTGCCTGCCCCCCTCGCCGCATTTTGGGATCCCAAAATGTAATTTCAGGAGGTCTAGAAGATCTTCACATCTTGCGTGTCCAAAACAAATATGATAACCATAATGAGCACCATGATGTTGATGAAGTAAACAGAAACCGAAAGGCCAAGCTTCTTGATGGTAGAAGATAG

Protein Analysis

282

Amino Acids

31.49

Weight (kDa)

9.41

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 136 - 230 2.6e-10 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017969)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25210
rosa_chinensis RchiOBHm_Chr2g0122911
rosa_laevigata RLG00000018725
rosa_multiflora Rmu_sc0001635.1_g000003
rosa_roxburghii Rroxscaffold_2G00120960
rosa_rugosa Rorug02G0243000
rosa_samantha Rh2AG302100 Rh2BG309600 Rh2CG288700 Rh2DG326100
rosa_wichuraiana Rw2G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 21, 568
AccBSI CCGCTC 1 cut(s) 36
AciI CCGC 5 cut(s) 36, 85, 88, 314, 697
AclWI GGATC 2 cut(s) 702, 715
AcoI YGGCCR 1 cut(s) 559
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 21, 568, 703
AgsI TTSAA 2 cut(s) 458, 622
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 6 cut(s) 122, 400, 480, 500, 587, 829
AluI AGCT 6 cut(s) 122, 400, 480, 500, 587, 829
Alw21I GWGCWC 2 cut(s) 420, 789
Alw26I GTCTC 1 cut(s) 123
Alw44I GTGCAC 1 cut(s) 416
AlwI GGATC 2 cut(s) 702, 715
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 3 cut(s) 114, 559, 822
ApaLI GTGCAC 1 cut(s) 416
ApeKI GCWGC 6 cut(s) 6, 260, 480, 500, 575, 584
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 2 cut(s) 284, 285
AsuHPI GGTGA 3 cut(s) 119, 253, 328
AvaI CYCGRG 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 561
BamHI GGATCC 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 420, 789
BbvI GCAGC 6 cut(s) 18, 272, 467, 487, 562, 596
BccI CCATC 3 cut(s) 15, 680, 830
BcnI CCSGG 2 cut(s) 284, 285
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 3 cut(s) 123, 477, 734
BfmI CTRYAG 4 cut(s) 411, 481, 501, 636
BglII AGATCT 1 cut(s) 739
BisI GCNGC 9 cut(s) 7, 37, 88, 261, 481, 501, 576, 585, 697
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 9 cut(s) 8, 38, 89, 262, 482, 502, 577, 586, 698
Bme1390I CCNGG 2 cut(s) 284, 285
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 2 cut(s) 284, 285
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 2 cut(s) 284, 285
BsaJI CCNNGG 3 cut(s) 282, 283, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 568, 703
Bse1I ACTGG 2 cut(s) 562, 647
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 282, 283, 425
BseGI GGATG 2 cut(s) 406, 672
BseLI CCNNNNNNNGG 3 cut(s) 21, 568, 703
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 23, 135
BseNI ACTGG 2 cut(s) 562, 647
BseRI GAGGAG 2 cut(s) 364, 390
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 6 cut(s) 18, 272, 467, 487, 562, 596
BseYI CCCAGC 1 cut(s) 385
BshFI GGCC 3 cut(s) 116, 561, 824
BsiHKAI GWGCWC 2 cut(s) 420, 789
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 2 cut(s) 117, 284
BslFI GGGAC 3 cut(s) 265, 368, 402
BslI CCNNNNNNNGG 3 cut(s) 21, 568, 703
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 3 cut(s) 265, 368, 402
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 3 cut(s) 116, 561, 824
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 420, 789
Bsp143I GATC 5 cut(s) 79, 216, 487, 707, 739
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 5 cut(s) 36, 85, 88, 314, 697
BspANI GGCC 3 cut(s) 116, 561, 824
BspCNI CTCAG 2 cut(s) 24, 136
BspLI GGNNCC 1 cut(s) 709
BspMAI CTGCAG 2 cut(s) 485, 505
BspPI GGATC 2 cut(s) 702, 715
BsrBI CCGCTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 2 cut(s) 562, 647
BssECI CCNNGG 3 cut(s) 282, 283, 425
BssMI GATC 5 cut(s) 79, 216, 487, 707, 739
BssT1I CCWWGG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 276, 415
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 3 cut(s) 32, 144, 201
BstF5I GGATG 2 cut(s) 406, 672
BstKTI GATC 5 cut(s) 82, 219, 490, 710, 742
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 5 cut(s) 79, 216, 487, 707, 739
BstMWI GCNNNNNNNGC 6 cut(s) 140, 500, 581, 584, 593, 693
BstSCI CCNGG 2 cut(s) 282, 283
BstSFI CTRYAG 4 cut(s) 411, 481, 501, 636
BstSLI GKGCMC 1 cut(s) 420
BstV1I GCAGC 6 cut(s) 18, 272, 467, 487, 562, 596
BstX2I RGATCY 2 cut(s) 707, 739
BstYI RGATCY 2 cut(s) 707, 739
BsuRI GGCC 3 cut(s) 116, 561, 824
BtsCI GGATG 2 cut(s) 406, 672
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 4 cut(s) 387, 420, 555, 654
Cac8I GCNNGC 1 cut(s) 685
Cfr13I GGNCC 1 cut(s) 114
Cfr9I CCCGGG 1 cut(s) 283
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 392, 568, 791
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 32, 144, 201
DpnI GATC 5 cut(s) 81, 218, 489, 709, 741
DpnII GATC 5 cut(s) 79, 216, 487, 707, 739
EaeI YGGCCR 1 cut(s) 559
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 3 cut(s) 395, 571, 794
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 3 cut(s) 265, 368, 402
FatI CATG 3 cut(s) 391, 567, 790
Fnu4HI GCNGC 9 cut(s) 7, 37, 88, 261, 481, 501, 576, 585, 697
FokI GGATG 2 cut(s) 393, 659
Fsp4HI GCNGC 9 cut(s) 7, 37, 88, 261, 481, 501, 576, 585, 697
FspBI CTAG 3 cut(s) 123, 477, 734
GluI GCNGC 9 cut(s) 7, 37, 88, 261, 481, 501, 576, 585, 697
GsaI CCCAGC 1 cut(s) 389
HaeIII GGCC 3 cut(s) 116, 561, 824
HapII CCGG 2 cut(s) 117, 284
HgaI GACGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 395, 571, 794
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 2 cut(s) 398, 827
HinfI GANTC 2 cut(s) 223, 618
HpaII CCGG 2 cut(s) 117, 284
HphI GGTGA 3 cut(s) 119, 253, 328
Hpy166II GTNNAC 4 cut(s) 418, 451, 610, 808
Hpy188III TCNNGA 5 cut(s) 71, 220, 726, 734, 833
Hpy8I GTNNAC 4 cut(s) 418, 451, 610, 808
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 4 cut(s) 37, 323, 431, 464
HpyCH4III ACNGT 2 cut(s) 276, 415
HpyCH4IV ACGT 2 cut(s) 309, 357
HpyCH4V TGCA 7 cut(s) 182, 260, 418, 483, 503, 578, 596
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 500, 581, 584, 593, 693
HpyF3I CTNAG 3 cut(s) 32, 144, 201
HpySE526I ACGT 2 cut(s) 309, 357
Hsp92II CATG 3 cut(s) 395, 571, 794
Kzo9I GATC 5 cut(s) 79, 216, 487, 707, 739
LmnI GCTCC 2 cut(s) 119, 377
Lsp1109I GCAGC 6 cut(s) 18, 272, 467, 487, 562, 596
MaeI CTAG 3 cut(s) 123, 477, 734
MaeII ACGT 2 cut(s) 309, 357
MaeIII GTNAC 4 cut(s) 305, 316, 547, 664
MalI GATC 5 cut(s) 81, 218, 489, 709, 741
MbiI CCGCTC 1 cut(s) 36
MboI GATC 5 cut(s) 79, 216, 487, 707, 739
MboII GAAGA 2 cut(s) 734, 749
MflI RGATCY 2 cut(s) 707, 739
MhlI GDGCHC 2 cut(s) 420, 789
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 1 cut(s) 720
MluNI TGGCCA 1 cut(s) 561
Mox20I TGGCCA 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 741
MscI TGGCCA 1 cut(s) 561
MslI CAYNNNNRTG 2 cut(s) 105, 792
Msp20I TGGCCA 1 cut(s) 561
MspI CCGG 2 cut(s) 117, 284
MspR9I CCNGG 2 cut(s) 284, 285
Mva1269I GAATGC 1 cut(s) 578
MwoI GCNNNNNNNGC 6 cut(s) 140, 500, 581, 584, 593, 693
NciI CCSGG 2 cut(s) 284, 285
NdeII GATC 5 cut(s) 79, 216, 487, 707, 739
NlaIII CATG 3 cut(s) 395, 571, 794
NlaIV GGNNCC 1 cut(s) 709
NmuCI GTSAC 2 cut(s) 316, 664
OliI CACNNNNGTG 1 cut(s) 105
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 2 cut(s) 223, 618
PflFI GACNNNGTC 1 cut(s) 134
PflMI CCANNNNNTGG 2 cut(s) 21, 568
PkrI GCNGC 9 cut(s) 8, 38, 89, 262, 482, 502, 577, 586, 698
PspFI CCCAGC 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 1 cut(s) 114
PstI CTGCAG 2 cut(s) 485, 505
PsuI RGATCY 2 cut(s) 707, 739
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 105, 792
SatI GCNGC 9 cut(s) 7, 37, 88, 261, 481, 501, 576, 585, 697
Sau3AI GATC 5 cut(s) 79, 216, 487, 707, 739
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 284, 285
SduI GDGCHC 2 cut(s) 420, 789
SfcI CTRYAG 4 cut(s) 411, 481, 501, 636
SmaI CCCGGG 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 105, 792
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 1 cut(s) 720
SsiI CCGC 5 cut(s) 36, 85, 88, 314, 697
SspMI CTAG 3 cut(s) 123, 477, 734
StyD4I CCNGG 2 cut(s) 282, 283
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 276, 415
TaiI ACGT 2 cut(s) 312, 360
TasI AATT 1 cut(s) 720
TauI GCSGC 3 cut(s) 39, 90, 699
TfiI GAWTC 2 cut(s) 223, 618
TscAI CASTG 4 cut(s) 387, 420, 562, 654
TseFI GTSAC 2 cut(s) 316, 664
TseI GCWGC 6 cut(s) 6, 260, 480, 500, 575, 584
Tsp45I GTSAC 2 cut(s) 316, 664
TspDTI ATGAA 2 cut(s) 342, 816
TspMI CCCGGG 1 cut(s) 283
TspRI CASTG 4 cut(s) 387, 420, 562, 654
Tth111I GACNNNGTC 1 cut(s) 134
Van91I CCANNNNNTGG 2 cut(s) 21, 568
VneI GTGCAC 1 cut(s) 416
XbaI TCTAGA 1 cut(s) 733
XmaI CCCGGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 3 cut(s) 123, 477, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.