Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Forward (+)

25081917 .. 25084006

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCAAAGAGTCCGCCATGGCTACAACAAAGTAGCTCGTGCTGTAGGCTAGGCAAAGCCGACCCAAAGAAGCAGCAAGACTTTCCAATATTGAAGGGACACTCTGCTGCACAAGAACATGCAGAAGAAGCTCTAGAGACCCATGAAACTGTCAGAAGCAGAAACAAAGTTCTAAAGGAGTTCAAGATTTACAGATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTCAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCTATGGTTTTGGATGCATTACAGAAGATAAAAGCAGAGAATGATTCAACCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACCGTGGCCTGTCTCAGACCCATTGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTAATTTCTACCAGCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGCCCCCGGAGGACTGTCGGGTGTACAAGCAATCGCCTGCAGACTGGAAGAAGCTTGACGGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCCTCCTACTGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCTTATCGATGGATATCAGACAGGTTTATTTTCTTTTGGTTGTGGATGAGGTTTTTTGGCAGTCGGGATCAGTCCACAGAGGAGCGATTGCAGGCATTAACAGAGGACCAGAAGAGGCTATATAGATGCAACATTATAAAGAATTGCACTGCCACGTGCCCCAAAAGCCTGAATCCTGCCGATGCCATACAGAAAATGAAAATCAAGCATTTGTTCTCTCAGCCTGTTGAAGTGGTCAGGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

314

Amino Acids

36.27

Weight (kDa)

8.69

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	61 - 166	2.6e-33	2Fe-2S iron-sulfur cluster binding domain
Fer4_17	PF13534	203 - 290	2.4e-09	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	833
AccI	GTMKAC	1 cut(s)	613
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	3 cut(s)	14, 443, 683
AclWI	GGATC	1 cut(s)	771
AcuI	CTGAAG	1 cut(s)	548
AcvI	CACGTG	1 cut(s)	852
AfaI	GTAC	2 cut(s)	506, 563
AfiI	CCNNNNNNNGG	2 cut(s)	651, 654
AgsI	TTSAA	6 cut(s)	94, 184, 312, 423, 518, 926
AluBI	AGCT	4 cut(s)	36, 131, 321, 592
AluI	AGCT	4 cut(s)	36, 131, 321, 592
Alw26I	GTCTC	2 cut(s)	131, 401
AlwI	GGATC	1 cut(s)	771
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	73, 107, 445
AspS9I	GGNCC	3 cut(s)	263, 677, 802
AsuC2I	CCSGG	1 cut(s)	545
AvaII	GGWCC	3 cut(s)	263, 677, 802
BaeGI	GKGCMC	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	37
BbrPI	CACGTG	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	85, 94, 432
BccI	CCATC	4 cut(s)	189, 216, 368, 699
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	131, 401
BfaI	CTAG	3 cut(s)	50, 134, 473
BfmI	CTRYAG	3 cut(s)	43, 322, 576
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	4 cut(s)	74, 108, 446, 684
BlsI	GCNGC	4 cut(s)	75, 109, 447, 685
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	3 cut(s)	263, 677, 802
BmgT120I	GGNCC	3 cut(s)	263, 677, 802
BmiI	GGNNCC	2 cut(s)	200, 379
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	4 cut(s)	268, 400, 812, 868
BpiI	GAAGAC	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	703
BsaAI	YACGTR	1 cut(s)	852
BsaBI	GATNNNNATC	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	17, 387, 521, 543, 673
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	651, 654
Bse1I	ACTGG	2 cut(s)	587, 656
Bse8I	GATNNNNATC	1 cut(s)	709
BseAI	TCCGGA	1 cut(s)	661
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	5 cut(s)	17, 387, 521, 543, 673
BseGI	GGATG	3 cut(s)	208, 283, 747
BseJI	GATNNNNATC	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	651, 654
BseMII	CTCAG	3 cut(s)	308, 412, 929
BseNI	ACTGG	2 cut(s)	587, 656
BseRI	GAGGAG	2 cut(s)	680, 791
BseSI	GKGCMC	1 cut(s)	857
BseXI	GCAGC	3 cut(s)	85, 94, 432
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	703
BsiSI	CCGG	2 cut(s)	545, 662
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	651, 654
BsmAI	GTCTC	2 cut(s)	131, 401
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	203, 857
Bsp13I	TCCGGA	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	462, 469, 481, 763
Bsp19I	CCATGG	2 cut(s)	17, 521
BspACI	CCGC	3 cut(s)	14, 443, 683
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	3 cut(s)	309, 411, 928
BspDI	ATCGAT	1 cut(s)	703
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	200, 379
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	771
BspTNI	GGTCTC	1 cut(s)	131
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	587, 656
BssECI	CCNNGG	5 cut(s)	17, 387, 521, 543, 673
BssMI	GATC	4 cut(s)	462, 469, 481, 763
BssNAI	GTATAC	1 cut(s)	614
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	3 cut(s)	17, 521, 673
Bst1107I	GTATAC	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	4 cut(s)	151, 260, 388, 554
Bst6I	CTCTTC	1 cut(s)	803
BstAUI	TGTACA	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	576, 789
BstDEI	CTNAG	3 cut(s)	317, 398, 915
BstDSI	CCRYGG	3 cut(s)	17, 387, 521
BstF5I	GGATG	3 cut(s)	208, 283, 747
BstKTI	GATC	4 cut(s)	465, 472, 484, 766
BstMAI	GTCTC	2 cut(s)	131, 401
BstMBI	GATC	4 cut(s)	462, 469, 481, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 598, 861
BstNSI	RCATGY	2 cut(s)	122, 943
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	3 cut(s)	43, 322, 576
BstSLI	GKGCMC	1 cut(s)	857
BstV1I	GCAGC	3 cut(s)	85, 94, 432
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	3 cut(s)	17, 387, 521
BtsCI	GGATG	3 cut(s)	208, 283, 747
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	843
Cac8I	GCNNGC	2 cut(s)	576, 789
Cfr13I	GGNCC	3 cut(s)	263, 677, 802
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	505, 562
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviQI	GTAC	2 cut(s)	505, 562
DdeI	CTNAG	3 cut(s)	317, 398, 915
DpnI	GATC	4 cut(s)	464, 471, 483, 765
DpnII	GATC	4 cut(s)	462, 469, 481, 763
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
Eco130I	CCWWGG	3 cut(s)	17, 521, 673
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	263, 677, 802
Eco57I	CTGAAG	1 cut(s)	548
Eco72I	CACGTG	1 cut(s)	852
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	3 cut(s)	17, 521, 673
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	3 cut(s)	17, 521, 673
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	74, 108, 446, 684
FokI	GGATG	3 cut(s)	195, 290, 754
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	74, 108, 446, 684
FspBI	CTAG	3 cut(s)	50, 134, 473
GluI	GCNGC	4 cut(s)	74, 108, 446, 684
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	545, 662
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	10, 308, 658, 868
HpaII	CCGG	2 cut(s)	545, 662
Hpy166II	GTNNAC	4 cut(s)	247, 562, 614, 771
Hpy188I	TCNGA	3 cut(s)	155, 401, 715
Hpy188III	TCNNGA	6 cut(s)	134, 184, 212, 662, 761, 934
Hpy8I	GTNNAC	4 cut(s)	247, 562, 614, 771
HpyAV	CCTTC	2 cut(s)	88, 335
HpyCH4III	ACNGT	4 cut(s)	151, 260, 388, 554
HpyCH4IV	ACGT	1 cut(s)	851
HpyCH4V	TGCA	9 cut(s)	110, 122, 281, 336, 413, 578, 787, 825, 843
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 598, 861
HpyF3I	CTNAG	3 cut(s)	317, 398, 915
HpySE526I	ACGT	1 cut(s)	851
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	462, 469, 481, 763
LmnI	GCTCC	4 cut(s)	198, 696, 778, 936
Lsp1109I	GCAGC	3 cut(s)	85, 94, 432
LweI	GCATC	4 cut(s)	268, 400, 812, 868
MaeI	CTAG	3 cut(s)	50, 134, 473
MaeII	ACGT	1 cut(s)	851
MalI	GATC	4 cut(s)	464, 471, 483, 765
MboI	GATC	4 cut(s)	462, 469, 481, 763
MboII	GAAGA	5 cut(s)	137, 301, 541, 598, 820
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	203, 857
MluCI	AATT	2 cut(s)	490, 838
MlyI	GAGTC	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	283
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	1 cut(s)	794
MspA1I	CMGCKG	2 cut(s)	445, 683
MspI	CCGG	2 cut(s)	545, 662
MspR9I	CCNGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	3 cut(s)	128, 598, 861
NciI	CCSGG	1 cut(s)	545
NcoI	CCATGG	2 cut(s)	17, 521
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	4 cut(s)	462, 469, 481, 763
NlaIV	GGNNCC	2 cut(s)	200, 379
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	122, 943
PfeI	GAWTC	3 cut(s)	308, 658, 868
PkrI	GCNGC	4 cut(s)	75, 109, 447, 685
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	852
PmlI	CACGTG	1 cut(s)	852
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	833
PspCI	CACGTG	1 cut(s)	852
PspN4I	GGNNCC	2 cut(s)	200, 379
PspPI	GGNCC	3 cut(s)	263, 677, 802
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	506, 563
RsaNI	GTAC	2 cut(s)	505, 562
SaqAI	TTAA	1 cut(s)	794
SatI	GCNGC	4 cut(s)	74, 108, 446, 684
Sau3AI	GATC	4 cut(s)	462, 469, 481, 763
Sau96I	GGNCC	3 cut(s)	263, 677, 802
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	203, 857
SfaNI	GCATC	4 cut(s)	268, 400, 812, 868
SfcI	CTRYAG	3 cut(s)	43, 322, 576
SinI	GGWCC	3 cut(s)	263, 677, 802
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	490, 838
SsiI	CCGC	3 cut(s)	14, 443, 683
SspI	AATATT	2 cut(s)	90, 370
SspMI	CTAG	3 cut(s)	50, 134, 473
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	3 cut(s)	17, 521, 673
TaaI	ACNGT	4 cut(s)	151, 260, 388, 554
TaiI	ACGT	1 cut(s)	854
TaqI	TCGA	1 cut(s)	703
TasI	AATT	2 cut(s)	490, 838
TatI	WGTACW	2 cut(s)	504, 561
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	3 cut(s)	308, 658, 868
Tru1I	TTAA	1 cut(s)	794
Tru9I	TTAA	1 cut(s)	794
TscAI	CASTG	1 cut(s)	850
TseI	GCWGC	3 cut(s)	73, 107, 445
TspDTI	ATGAA	4 cut(s)	159, 380, 621, 908
TspRI	CASTG	1 cut(s)	850
VpaK11BI	GGWCC	3 cut(s)	263, 677, 802
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	2 cut(s)	122, 943
XmiI	GTMKAC	1 cut(s)	613
XspI	CTAG	3 cut(s)	50, 134, 473
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.