Rw2G024190

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000676
Physical Location & Seq
Forward (+)
35709688 .. 35710788
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024190.1

Sequence Viewer

Length: 1101 bp
ATGGAGGATGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTATGTCTATCTTATTGCCATTACATGGTCTCCAGATTAATCCCTAAGGGCCTGCTTAGGCTCATTTCTCTCCTCCCTGTCTTCTACTTCTTCATCACCACCCCCCTAACTCTCCATTCCTTCCATCTCTGTGGATCCACAACCTTCTTCCTAGTCTGGCTTGGCATCTTCAAGCTTCTCCTCTTCTCCTTCAACCTTGGCCCTCTATCACCACCCCCAGCGTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATGAAAATCAAACAAGACCCACTTCGGAAAACACCCCCAAATCCCAAAACCACCCAAAAACCCAGAAACCCAATTGGTCAAAGTGTCACAAAGTGGCTGCCAAACAAGTCAATTGTGGTGGCTGTGAAGGCATTGCTTTTGGGTATGATCATTCATATCTACGAGTACAGACCACATTTGCACCCTTATGTGATCTTAGCCTTGTACTGTTGCCACATGTACCTGGCTCTAGAATTAATCCTGGTCCTGAGCGCGACTCCGGCTCGGGCTCTTTTCAGATTTGAGATCGAGCCGCAGTCCAACGAGCCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATCTAATGGTCACGAACATCCTGCGCCCAACGGTATACGATCCCACCCGGCGCGTGTGTGCGCGTGTAGTTGGGAAGCGGTGGGCAAGGCTGCCGGCTGTGATGGCCACCTTTGCGGTGTCCGGGTTAATGCACGAGGTTATTTATTATTATCTCACCCGCGTGCAGCCCACGTGGGAAGTGACGTGGTTTTTTGTGCTACATGGGGCTTGCGTGGTGGTTGAGGTGGAGGTGAAGAAGGCGGTCACCGGCAGGTGGAGATTGCACCCGGTGGTTTCGGGGCCGTTGACGTTGGTGTTCTTGGCTGTCACCGGCAACTGGCTGTTCTTTCCTCAGTTGCTCAGGAATGGTGTTGATATAAAGACTATAGGAGAGTATGCAATTATGGTGGACTTTGTCAAGGCTAACTTGCCTCATTTAAGTTATTGGCCCAACAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

366

Amino Acids

42.14

Weight (kDa)

9.71

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 199 - 285 7.6e-20 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 900
AccB7I CCANNNNNTGG 1 cut(s) 73
AccI GTMKAC 1 cut(s) 693
AccII CGCG 4 cut(s) 560, 711, 721, 819
AciI CCGC 5 cut(s) 599, 736, 773, 817, 899
AclWI GGATC 4 cut(s) 44, 177, 190, 692
AcoI YGGCCR 1 cut(s) 762
AcvI CACGTG 1 cut(s) 831
AdeI CACNNNGTG 2 cut(s) 399, 928
AfaI GTAC 3 cut(s) 473, 512, 527
AfiI CCNNNNNNNGG 3 cut(s) 73, 912, 975
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 3 cut(s) 220, 241, 635
AjiI CACGTC 1 cut(s) 843
AjnI CCWGG 2 cut(s) 528, 546
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 4 cut(s) 13, 223, 296, 1098
AluI AGCT 4 cut(s) 13, 223, 296, 1098
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 44, 177, 190, 692
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 6 cut(s) 97, 247, 646, 762, 938, 1085
ApeKI GCWGC 3 cut(s) 403, 748, 823
AseI ATTAAT 2 cut(s) 86, 542
AspLEI GCGC 4 cut(s) 560, 684, 711, 721
AspS9I GGNCC 6 cut(s) 97, 248, 550, 646, 938, 1086
AsuC2I CCSGG 3 cut(s) 706, 781, 926
AsuHPI GGTGA 6 cut(s) 136, 249, 805, 895, 901, 958
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 1 cut(s) 550
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 764
BamHI GGATCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 15, 577
BauI CACGAG 1 cut(s) 791
BbrPI CACGTG 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 390, 735, 835
BccI CCATC 4 cut(s) 53, 180, 648, 754
BceAI ACGGC 2 cut(s) 633, 925
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 2 cut(s) 530, 548
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 3 cut(s) 706, 781, 926
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 200, 536
BfmI CTRYAG 1 cut(s) 1023
BfuAI ACCTGC 1 cut(s) 900
BisI GCNGC 4 cut(s) 404, 599, 749, 824
BlsI GCNGC 4 cut(s) 405, 600, 750, 825
Bme1390I CCNGG 5 cut(s) 530, 548, 706, 781, 926
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 843
BmgT120I GGNCC 6 cut(s) 97, 248, 550, 646, 938, 1086
BmiI GGNNCC 3 cut(s) 184, 647, 939
BmrFI CCNGG 5 cut(s) 530, 548, 706, 781, 926
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 3 cut(s) 104, 554, 998
BpuMI CCSGG 3 cut(s) 706, 781, 926
BsaAI YACGTR 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 912, 975
Bse118I RCCGGY 3 cut(s) 751, 905, 968
Bse1I ACTGG 1 cut(s) 980
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 2 cut(s) 530, 548
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 13, 675
BseLI CCNNNNNNNGG 3 cut(s) 73, 912, 975
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 545, 1004, 1012
BseNI ACTGG 1 cut(s) 980
BseRI GAGGAG 2 cut(s) 110, 218
BseXI GCAGC 3 cut(s) 390, 735, 835
BseYI CCCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 842
Bsh1236I CGCG 4 cut(s) 560, 711, 721, 819
BshFI GGCC 6 cut(s) 99, 249, 648, 764, 940, 1087
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
BslI CCNNNNNNNGG 3 cut(s) 73, 912, 975
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 6 cut(s) 99, 249, 648, 764, 940, 1087
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 15, 577
Bsp143I GATC 6 cut(s) 36, 182, 453, 498, 591, 697
BspACI CCGC 5 cut(s) 599, 736, 773, 817, 899
BspANI GGCC 6 cut(s) 99, 249, 648, 764, 940, 1087
BspCNI CTCAG 3 cut(s) 546, 1003, 1011
BspFNI CGCG 4 cut(s) 560, 711, 721, 819
BspLI GGNNCC 3 cut(s) 184, 647, 939
BspMI ACCTGC 1 cut(s) 900
BspPI GGATC 4 cut(s) 44, 177, 190, 692
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 437
BsrFI RCCGGY 3 cut(s) 751, 905, 968
BsrI ACTGG 1 cut(s) 980
BssAI RCCGGY 3 cut(s) 751, 905, 968
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
BssNAI GTATAC 1 cut(s) 694
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 2 cut(s) 530, 548
Bst4CI ACNGT 2 cut(s) 515, 691
Bst6I CTCTTC 2 cut(s) 236, 281
BstBAI YACGTR 1 cut(s) 831
BstC8I GCNNGC 5 cut(s) 101, 298, 753, 821, 868
BstDEI CTNAG 6 cut(s) 93, 104, 502, 554, 990, 998
BstEII GGTNACC 1 cut(s) 901
BstF5I GGATG 2 cut(s) 13, 675
BstFNI CGCG 4 cut(s) 560, 711, 721, 819
BstHHI GCGC 4 cut(s) 560, 684, 711, 721
BstKTI GATC 6 cut(s) 39, 185, 456, 501, 594, 700
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
BstMWI GCNNNNNNNGC 4 cut(s) 434, 566, 761, 770
BstNI CCWGG 2 cut(s) 530, 548
BstNSI RCATGY 1 cut(s) 526
BstPI GGTNACC 1 cut(s) 901
BstSCI CCNGG 5 cut(s) 528, 546, 704, 779, 924
BstSFI CTRYAG 1 cut(s) 1023
BstUI CGCG 4 cut(s) 560, 711, 721, 819
BstV1I GCAGC 3 cut(s) 390, 735, 835
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 694
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 6 cut(s) 99, 249, 648, 764, 940, 1087
BtrI CACGTC 1 cut(s) 843
BtsCI GGATG 2 cut(s) 13, 675
BveI ACCTGC 1 cut(s) 900
Cac8I GCNNGC 5 cut(s) 101, 298, 753, 821, 868
CfoI GCGC 4 cut(s) 560, 684, 711, 721
Cfr10I RCCGGY 3 cut(s) 751, 905, 968
Cfr13I GGNCC 6 cut(s) 97, 248, 550, 646, 938, 1086
CseI GACGC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 472, 511, 526
CspCI CAANNNNNGTGG 4 cut(s) 405, 440, 1026, 1061
CviAII CATG 4 cut(s) 73, 307, 523, 860
CviQI GTAC 3 cut(s) 472, 511, 526
DdeI CTNAG 6 cut(s) 93, 104, 502, 554, 990, 998
DpnI GATC 6 cut(s) 38, 184, 455, 500, 593, 699
DpnII GATC 6 cut(s) 36, 182, 453, 498, 591, 697
DraIII CACNNNGTG 2 cut(s) 399, 928
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 236, 281
EarI CTCTTC 2 cut(s) 236, 281
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 15, 577
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 831
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 901
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 901
EcoRII CCWGG 2 cut(s) 528, 546
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 15, 577
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 76, 310, 526, 863
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 1049, 1081
FatI CATG 4 cut(s) 72, 306, 522, 859
FauI CCCGC 1 cut(s) 824
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 4 cut(s) 404, 599, 749, 824
FokI GGATG 2 cut(s) 20, 662
FriOI GRGCYC 2 cut(s) 15, 577
Fsp4HI GCNGC 4 cut(s) 404, 599, 749, 824
FspBI CTAG 2 cut(s) 200, 536
GlaI GCGC 4 cut(s) 559, 683, 710, 720
GluI GCNGC 4 cut(s) 404, 599, 749, 824
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 6 cut(s) 99, 249, 648, 764, 940, 1087
HapII CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
HgaI GACGC 1 cut(s) 258
HhaI GCGC 4 cut(s) 560, 684, 711, 721
Hin1II CATG 4 cut(s) 76, 310, 526, 863
Hin6I GCGC 4 cut(s) 558, 682, 709, 719
HinP1I GCGC 4 cut(s) 558, 682, 709, 719
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 562, 658
HpaII CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
HphI GGTGA 6 cut(s) 136, 249, 805, 895, 901, 958
Hpy166II GTNNAC 3 cut(s) 694, 945, 1048
Hpy188I TCNGA 2 cut(s) 333, 584
Hpy188III TCNNGA 7 cut(s) 16, 81, 536, 553, 635, 670, 1000
Hpy8I GTNNAC 3 cut(s) 694, 945, 1048
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 5 cut(s) 178, 202, 247, 427, 889
HpyCH4III ACNGT 2 cut(s) 515, 691
HpyCH4IV ACGT 3 cut(s) 830, 842, 947
HpyCH4V TGCA 5 cut(s) 487, 790, 823, 922, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 566, 761, 770
HpyF3I CTNAG 6 cut(s) 93, 104, 502, 554, 990, 998
HpySE526I ACGT 3 cut(s) 830, 842, 947
Hsp92II CATG 4 cut(s) 76, 310, 526, 863
HspAI GCGC 4 cut(s) 558, 682, 709, 719
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 6 cut(s) 36, 182, 453, 498, 591, 697
Lsp1109I GCAGC 3 cut(s) 390, 735, 835
LweI GCATC 1 cut(s) 222
MaeI CTAG 2 cut(s) 200, 536
MaeII ACGT 3 cut(s) 830, 842, 947
MaeIII GTNAC 6 cut(s) 270, 391, 667, 838, 901, 964
MalI GATC 6 cut(s) 38, 184, 455, 500, 593, 699
MboI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
MboII GAAGA 7 cut(s) 121, 130, 187, 208, 223, 268, 904
MfeI CAATTG 2 cut(s) 378, 417
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 15, 577
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 4 cut(s) 378, 417, 539, 1038
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 630
Mox20I TGGCCA 1 cut(s) 764
MroNI GCCGGC 1 cut(s) 751
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 86, 542, 785, 1076
MslI CAYNNNNRTG 3 cut(s) 177, 492, 818
Msp20I TGGCCA 1 cut(s) 764
MspI CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
MspR9I CCNGG 5 cut(s) 530, 548, 706, 781, 926
MunI CAATTG 2 cut(s) 378, 417
MvaI CCWGG 2 cut(s) 530, 548
MvnI CGCG 4 cut(s) 560, 711, 721, 819
MwoI GCNNNNNNNGC 4 cut(s) 434, 566, 761, 770
NaeI GCCGGC 1 cut(s) 753
NciI CCSGG 3 cut(s) 706, 781, 926
NdeII GATC 6 cut(s) 36, 182, 453, 498, 591, 697
NgoMIV GCCGGC 1 cut(s) 751
NlaIII CATG 4 cut(s) 76, 310, 526, 863
NlaIV GGNNCC 3 cut(s) 184, 647, 939
NmuCI GTSAC 6 cut(s) 270, 391, 667, 838, 901, 964
NspI RCATGY 1 cut(s) 526
OliI CACNNNNGTG 1 cut(s) 818
PaqCI CACCTGC 1 cut(s) 900
PciI ACATGT 1 cut(s) 522
PdiI GCCGGC 1 cut(s) 753
PfeI GAWTC 1 cut(s) 658
PflFI GACNNNGTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 4 cut(s) 405, 600, 750, 825
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 831
PmlI CACGTG 1 cut(s) 831
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 831
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 2 cut(s) 86, 542
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 528, 546
PspCI CACGTG 1 cut(s) 831
PspEI GGTNACC 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 528, 546
PspN4I GGNNCC 3 cut(s) 184, 647, 939
PspPI GGNCC 6 cut(s) 97, 248, 550, 646, 938, 1086
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 1052
RsaI GTAC 3 cut(s) 473, 512, 527
RsaNI GTAC 3 cut(s) 472, 511, 526
RseI CAYNNNNRTG 3 cut(s) 177, 492, 818
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 86, 542, 785, 1076
SatI GCNGC 4 cut(s) 404, 599, 749, 824
Sau3AI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
Sau96I GGNCC 6 cut(s) 97, 248, 550, 646, 938, 1086
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 5 cut(s) 530, 548, 706, 781, 926
SduI GDGCHC 2 cut(s) 15, 577
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 1023
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 3 cut(s) 177, 492, 818
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 4 cut(s) 378, 417, 539, 1038
SsiI CCGC 5 cut(s) 599, 736, 773, 817, 899
SspMI CTAG 2 cut(s) 200, 536
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 5 cut(s) 528, 546, 704, 779, 924
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 515, 691
TaiI ACGT 3 cut(s) 833, 845, 950
TaqI TCGA 2 cut(s) 594, 652
TasI AATT 4 cut(s) 378, 417, 539, 1038
TatI WGTACW 2 cut(s) 471, 510
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 4 cut(s) 86, 542, 785, 1076
Tru9I TTAA 4 cut(s) 86, 542, 785, 1076
TseFI GTSAC 6 cut(s) 270, 391, 667, 838, 901, 964
TseI GCWGC 3 cut(s) 403, 748, 823
Tsp45I GTSAC 6 cut(s) 270, 391, 667, 838, 901, 964
TspDTI ATGAA 5 cut(s) 13, 130, 274, 323, 449
Tth111I GACNNNGTC 1 cut(s) 1052
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 550
VspI ATTAAT 2 cut(s) 86, 542
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 2 cut(s) 200, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.