RchiOBHm_Chr6g0266341

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000676
Physical Location & Seq
Forward (+)
22544951 .. 22545196
246 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23886

Sequence Viewer

Length: 246 bp
ATGGATGGTGATGAAATCAAAAACTTCATCAAGGTGTGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTAGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCAATCTTGTACCTCCTTGTCATGCTCCCCTTGAACCGCCACTCGATCCATCTCGGTGCCCCCTCAGCCTTCTTTCTTTGGTTGTCTTGCAATCTTCAAACTCATTCTCTTCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

81

Amino Acids

9.3

Weight (kDa)

8.96

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 163
AclWI GGATC 2 cut(s) 47, 166
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 2 cut(s) 160, 224
AlwI GGATC 2 cut(s) 47, 166
ApeKI GCWGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 183
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 48
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 39, 171
BspACI CCGC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 2 cut(s) 47, 166
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 48
BssMI GATC 2 cut(s) 39, 171
Bst6I CTCTTC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 42, 174
BstMBI GATC 2 cut(s) 39, 171
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 10
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 103, 148
CviJI RGCY 3 cut(s) 47, 112, 194
CviKI_1 RGCY 3 cut(s) 47, 112, 194
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 41, 173
DpnII GATC 2 cut(s) 39, 171
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco105I TACGTA 1 cut(s) 76
FaeI CATG 2 cut(s) 106, 151
FaiI YATR 3 cut(s) 44, 104, 149
FatI CATG 2 cut(s) 102, 147
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
Hin1II CATG 2 cut(s) 106, 151
HinfI GANTC 1 cut(s) 87
HphI GGTGA 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 53, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 106, 151
Kzo9I GATC 2 cut(s) 39, 171
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 62
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 41, 173
MboI GATC 2 cut(s) 39, 171
MboII GAAGA 2 cut(s) 212, 227
MhlI GDGCHC 1 cut(s) 187
MnlI CCTC 4 cut(s) 102, 134, 149, 199
MslI CAYNNNNRTG 3 cut(s) 32, 58, 180
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 39, 171
NlaIII CATG 2 cut(s) 106, 151
NlaIV GGNNCC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 3 cut(s) 32, 58, 180
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 39, 171
SduI GDGCHC 1 cut(s) 187
SetI ASST 3 cut(s) 36, 78, 141
SfaNI GCATC 1 cut(s) 62
SmiMI CAYNNNNRTG 3 cut(s) 32, 58, 180
SnaBI TACGTA 1 cut(s) 76
SsiI CCGC 1 cut(s) 163
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 170
TfiI GAWTC 1 cut(s) 87
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 16, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.